RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 ADAM33Q9BZ11 813 aa13.41□□□□□ -0.26
SKP1-213ENST00000524288 KDM2AQ9Y2K7 1162 aa13.41□□□□□ -0.26
SKP1-213ENST00000524288 TSHZ2Q9NRE2 1034 aa13.39□□□□□ -0.27
SKP1-213ENST00000524288 VPS9D1Q9Y2B5 631 aa13.38□□□□□ -0.27
SKP1-213ENST00000524288 PPP1R3GB7ZBB8 358 aa13.35□□□□□ -0.27
SKP1-213ENST00000524288 ZBED2Q9BTP6 218 aa13.35□□□□□ -0.27
SKP1-213ENST00000524288 STAC3Q96MF2 364 aa13.34□□□□□ -0.27
SKP1-213ENST00000524288 BCANQ96GW7 911 aa13.33□□□□□ -0.28
SKP1-213ENST00000524288 DDX12PQ92771 950 aa13.31□□□□□ -0.28
SKP1-213ENST00000524288 BHMG1C9JSJ3 638 aaPredicted RBP13.28□□□□□ -0.28
SKP1-213ENST00000524288 NBR1Q14596 966 aa13.27□□□□□ -0.29
SKP1-213ENST00000524288 C6orf132Q5T0Z8 1188 aa13.27□□□□□ -0.29
SKP1-213ENST00000524288 EN1Q05925 392 aaPredicted RBP13.26□□□□□ -0.29
SKP1-213ENST00000524288 NBPF3Q9H094 633 aa13.26□□□□□ -0.29
SKP1-213ENST00000524288 ARHGEF1Q92888 912 aaKnown RBP13.25□□□□□ -0.29
SKP1-213ENST00000524288 COL9A1P20849 921 aa13.24□□□□□ -0.29
SKP1-213ENST00000524288 HCSTQ9UBK5 93 aa13.24□□□□□ -0.29
SKP1-213ENST00000524288 ONECUT3O60422 494 aaPredicted RBP13.23□□□□□ -0.29
SKP1-213ENST00000524288 RABGEF1Q9UJ41 708 aa13.23□□□□□ -0.29
SKP1-213ENST00000524288 P3H3Q8IVL6 736 aa13.22□□□□□ -0.29
SKP1-213ENST00000524288 MRPL50Q8N5N7 158 aaKnown RBP13.22□□□□□ -0.29
SKP1-213ENST00000524288 RBM33Q96EV2 1170 aaKnown RBP13.22□□□□□ -0.29
SKP1-213ENST00000524288 MAP3K7O43318 606 aa13.21□□□□□ -0.29
SKP1-213ENST00000524288 PRKCSHP14314 528 aaPredicted RBP13.2□□□□□ -0.3
SKP1-213ENST00000524288 KCNV2Q8TDN2 545 aa13.19□□□□□ -0.3
SKP1-213ENST00000524288 KCTD12Q96CX2 325 aaKnown RBP13.19□□□□□ -0.3
SKP1-213ENST00000524288 GRXCR2A6NFK2 248 aa13.18□□□□□ -0.3
SKP1-213ENST00000524288 PROX2Q3B8N5 592 aa13.18□□□□□ -0.3
SKP1-213ENST00000524288 GOLGA8CPA6NN73 597 aa13.17□□□□□ -0.3
SKP1-213ENST00000524288 CERKQ8TCT0 537 aa13.17□□□□□ -0.3
SKP1-213ENST00000524288 LAPTM4BQ86VI4 370 aa13.16□□□□□ -0.3
SKP1-213ENST00000524288 TRIM6-TRIM34B2RNG4 842 aa13.15□□□□□ -0.3
SKP1-213ENST00000524288 TSR1Q2NL82 804 aaKnown RBP13.14□□□□□ -0.31
SKP1-213ENST00000524288 OSBPP22059 807 aa13.13□□□□□ -0.31
SKP1-213ENST00000524288 WNT2BQ93097 391 aa13.12□□□□□ -0.31
SKP1-213ENST00000524288 KIAA1468Q9P260 1216 aa13.12□□□□□ -0.31
SKP1-213ENST00000524288 THSD4Q6ZMP0 1018 aa13.11□□□□□ -0.31
SKP1-213ENST00000524288 PRIM1P49642 420 aaKnown RBP13.09□□□□□ -0.31
SKP1-213ENST00000524288 PACS2Q86VP3 889 aa13.08□□□□□ -0.32
SKP1-213ENST00000524288 ANKK1Q8NFD2 765 aa13.07□□□□□ -0.32
SKP1-213ENST00000524288 RBM27Q9P2N5 1060 aaKnown RBP13.07□□□□□ -0.32
SKP1-213ENST00000524288 PRSS12P56730 875 aa13.06□□□□□ -0.32
SKP1-213ENST00000524288 FAM98CQ17RN3 349 aaKnown RBP13.05□□□□□ -0.32
SKP1-213ENST00000524288 CDCA7LQ96GN5 454 aa13.05□□□□□ -0.32
SKP1-213ENST00000524288 TSKSQ9UJT2 592 aa13.05□□□□□ -0.32
SKP1-213ENST00000524288 PTPN5P54829 565 aa13.03□□□□□ -0.32
SKP1-213ENST00000524288 TPRNQ4KMQ1 711 aa13.03□□□□□ -0.32
SKP1-213ENST00000524288 ZFRQ96KR1 1074 aaKnown RBP13.03□□□□□ -0.32
SKP1-213ENST00000524288 MLLT3P42568 568 aaPredicted RBP13.01□□□□□ -0.33
SKP1-213ENST00000524288 CDHR5Q9HBB8 845 aa13.01□□□□□ -0.33
SKP1-213ENST00000524288 PLA2G2EQ9NZK7 142 aa13.01□□□□□ -0.33
SKP1-213ENST00000524288 SEPT9Q9UHD8 586 aaPredicted RBP13.01□□□□□ -0.33
SKP1-213ENST00000524288 SOWAHBA6NEL2 793 aa12.99□□□□□ -0.33
SKP1-213ENST00000524288 NBPF26B4DH59 902 aa12.99□□□□□ -0.33
SKP1-213ENST00000524288 NYAP1Q6ZVC0 841 aa12.96□□□□□ -0.33
SKP1-213ENST00000524288 NPDC1Q9NQX5 325 aaPredicted RBP12.96□□□□□ -0.33
SKP1-213ENST00000524288 FAM198AQ9UFP1 575 aa12.95□□□□□ -0.34
SKP1-213ENST00000524288 BCAMP50895 628 aa12.94□□□□□ -0.34
SKP1-213ENST00000524288 TTC13Q8NBP0 860 aa12.94□□□□□ -0.34
SKP1-213ENST00000524288 TATDN2Q93075 761 aa12.94□□□□□ -0.34
SKP1-213ENST00000524288 LRCH3Q96II8 777 aa12.94□□□□□ -0.34
SKP1-213ENST00000524288 SEMA3EO15041 775 aa12.93□□□□□ -0.34
SKP1-213ENST00000524288 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.93□□□□□ -0.34
SKP1-213ENST00000524288 IFFO2Q5TF58 517 aa12.91□□□□□ -0.34
SKP1-213ENST00000524288 PNMA3Q9UL41 463 aa12.91□□□□□ -0.34
SKP1-213ENST00000524288 SMYD5Q6GMV2 418 aa12.9□□□□□ -0.34
SKP1-213ENST00000524288 PADI6Q6TGC4 694 aa12.9□□□□□ -0.34
SKP1-213ENST00000524288 TESPA1A2RU30 521 aaPredicted RBP12.89□□□□□ -0.35
SKP1-213ENST00000524288 PTGDRQ13258 359 aa12.89□□□□□ -0.35
SKP1-213ENST00000524288 TSR3Q9UJK0 312 aaKnown RBP12.89□□□□□ -0.35
SKP1-213ENST00000524288 NUDT18Q6ZVK8 323 aa12.88□□□□□ -0.35
SKP1-213ENST00000524288 SMAPO00193 183 aa12.87□□□□□ -0.35
SKP1-213ENST00000524288 HPS5Q9UPZ3 1129 aa12.86□□□□□ -0.35
SKP1-213ENST00000524288 NUTM2FA1L443 756 aa12.85□□□□□ -0.35
SKP1-213ENST00000524288 C3orf80F5H4A9 247 aa12.85□□□□□ -0.35
SKP1-213ENST00000524288 HDGFP51858 240 aaKnown RBP12.85□□□□□ -0.35
SKP1-213ENST00000524288 WBP1LQ9NX94 342 aa12.85□□□□□ -0.35
SKP1-213ENST00000524288 SAMD7Q7Z3H4 446 aa12.84□□□□□ -0.35
SKP1-213ENST00000524288 FCHSD2O94868 740 aa12.83□□□□□ -0.36
SKP1-213ENST00000524288 ITGBL1O95965 494 aaPredicted RBP12.82□□□□□ -0.36
SKP1-213ENST00000524288 PPP4CP60510 307 aa12.81□□□□□ -0.36
SKP1-213ENST00000524288 NECTIN2Q92692 538 aa12.81□□□□□ -0.36
SKP1-213ENST00000524288 EYA1Q99502 592 aa12.8□□□□□ -0.36
SKP1-213ENST00000524288 SLC4A3P48751 1232 aa12.77□□□□□ -0.37
SKP1-213ENST00000524288 HIC1Q14526 733 aa12.76□□□□□ -0.37
SKP1-213ENST00000524288 RBM46Q8TBY0 533 aaKnown RBP12.76□□□□□ -0.37
SKP1-213ENST00000524288 SLF2Q8IX21 1173 aa12.75□□□□□ -0.37
SKP1-213ENST00000524288 ADGRG1Q9Y653 693 aa12.75□□□□□ -0.37
SKP1-213ENST00000524288 RBM26Q5T8P6 1007 aaKnown RBP12.74□□□□□ -0.37
SKP1-213ENST00000524288 DNAJB2P25686 324 aa12.73□□□□□ -0.37
SKP1-213ENST00000524288 A0A0G2JS52 829 aa12.72□□□□□ -0.37
SKP1-213ENST00000524288 KCNC4Q03721 635 aa12.72□□□□□ -0.37
SKP1-213ENST00000524288 SWT1Q5T5J6 900 aaKnown RBP12.72□□□□□ -0.37
SKP1-213ENST00000524288 RNF40O75150 1001 aa12.71□□□□□ -0.37
SKP1-213ENST00000524288 RGS20O76081 388 aa12.71□□□□□ -0.37
SKP1-213ENST00000524288 TULP1O00294 542 aaPredicted RBP12.69□□□□□ -0.38
SKP1-213ENST00000524288 OATP04181 439 aa12.69□□□□□ -0.38
SKP1-213ENST00000524288 GNPATO15228 680 aa12.68□□□□□ -0.38
SKP1-213ENST00000524288 TMEM134Q9H6X4 195 aa12.68□□□□□ -0.38
SKP1-213ENST00000524288 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms