RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.46	□□□□□ -0.57
SPIDR-223	ENST00000524033	BCORL1	Q5H9F3	1711 aa		11.46	□□□□□ -0.58
SPIDR-223	ENST00000524033	FYCO1	Q9BQS8	1478 aa		11.45	□□□□□ -0.58
SPIDR-223	ENST00000524033	C9orf84	Q5VXU9	1444 aa		11.45	□□□□□ -0.58
SPIDR-223	ENST00000524033	CEBPA	P49715	358 aa	Predicted RBP	11.45	□□□□□ -0.58
SPIDR-223	ENST00000524033	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.45	□□□□□ -0.58	3e-6	■■■■□ 25.9
SPIDR-223	ENST00000524033	ESF1	Q9H501	851 aa	Known RBP	11.45	□□□□□ -0.58
SPIDR-223	ENST00000524033	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.45	□□□□□ -0.58
SPIDR-223	ENST00000524033	MADD	Q8WXG6	1647 aa		11.45	□□□□□ -0.58
SPIDR-223	ENST00000524033	TRAPPC8	Q9Y2L5	1435 aa		11.43	□□□□□ -0.58
SPIDR-223	ENST00000524033	PITPNM1	O00562	1244 aa		11.43	□□□□□ -0.58
SPIDR-223	ENST00000524033	MTUS2	Q5JR59	1369 aa		11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	CCNB3	Q8WWL7	1395 aa		11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	PCF11	O94913	1555 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	SPAG9	O60271	1321 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	ECM2	O94769	699 aa	Predicted RBP	11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	LMTK3	Q96Q04	1460 aa		11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	MLH3	Q9UHC1	1453 aa		11.42	□□□□□ -0.58
SPIDR-223	ENST00000524033	ARHGEF12	Q9NZN5	1544 aa		11.41	□□□□□ -0.58
SPIDR-223	ENST00000524033	PKD2	Q13563	968 aa		11.41	□□□□□ -0.58
SPIDR-223	ENST00000524033	MYO5C	Q9NQX4	1742 aa		11.4	□□□□□ -0.58
SPIDR-223	ENST00000524033	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-223	ENST00000524033	FBXO41	Q8TF61	875 aa		11.4	□□□□□ -0.58
SPIDR-223	ENST00000524033	TIAM1	Q13009	1591 aa		11.4	□□□□□ -0.58
SPIDR-223	ENST00000524033	MYT1	Q01538	1121 aa		11.39	□□□□□ -0.59
SPIDR-223	ENST00000524033	KDM5C	P41229	1560 aa		11.38	□□□□□ -0.59
SPIDR-223	ENST00000524033	RIMS1	Q86UR5	1692 aa	Known RBP	11.38	□□□□□ -0.59
SPIDR-223	ENST00000524033	ZNF644	Q9H582	1327 aa	Predicted RBP	11.37	□□□□□ -0.59
SPIDR-223	ENST00000524033	KIAA1107	Q9UPP5	1409 aa		11.37	□□□□□ -0.59
SPIDR-223	ENST00000524033	LRRIQ1	Q96JM4	1722 aa		11.37	□□□□□ -0.59
SPIDR-223	ENST00000524033	SIGLEC1	Q9BZZ2	1709 aa		11.37	□□□□□ -0.59
SPIDR-223	ENST00000524033	ABCC1	P33527	1531 aa		11.36	□□□□□ -0.59
SPIDR-223	ENST00000524033	SLC24A1	O60721	1099 aa		11.36	□□□□□ -0.59
SPIDR-223	ENST00000524033	CREBZF	Q9NS37	354 aa		11.36	□□□□□ -0.59
SPIDR-223	ENST00000524033	KANK4	Q5T7N3	995 aa	Predicted RBP	11.35	□□□□□ -0.59
SPIDR-223	ENST00000524033	DIP2C	Q9Y2E4	1556 aa		11.34	□□□□□ -0.59
SPIDR-223	ENST00000524033	PLEKHH2	Q8IVE3	1493 aa		11.34	□□□□□ -0.59
SPIDR-223	ENST00000524033	GGT6	Q6P531	493 aa		11.34	□□□□□ -0.59
SPIDR-223	ENST00000524033	CDC42BPB	Q9Y5S2	1711 aa		11.34	□□□□□ -0.59
SPIDR-223	ENST00000524033	PREX2	Q70Z35	1606 aa		11.34	□□□□□ -0.59
SPIDR-223	ENST00000524033	DCAF8	Q5TAQ9	597 aa		11.33	□□□□□ -0.6
SPIDR-223	ENST00000524033	AGL	P35573	1532 aa		11.33	□□□□□ -0.6
SPIDR-223	ENST00000524033	GSE1	Q14687	1217 aa		11.32	□□□□□ -0.6
SPIDR-223	ENST00000524033	UHRF1BP1	Q6BDS2	1440 aa		11.32	□□□□□ -0.6
SPIDR-223	ENST00000524033	RERE	Q9P2R6	1566 aa		11.32	□□□□□ -0.6
SPIDR-223	ENST00000524033	ZMYM3	Q14202	1370 aa		11.31	□□□□□ -0.6
SPIDR-223	ENST00000524033	SYCP2	Q9BX26	1530 aa		11.31	□□□□□ -0.6
SPIDR-223	ENST00000524033	RSPH4A	Q5TD94	716 aa		11.31	□□□□□ -0.6
SPIDR-223	ENST00000524033	CERK	Q8TCT0	537 aa		11.31	□□□□□ -0.6
SPIDR-223	ENST00000524033	CNTLN	Q9NXG0	1405 aa		11.31	□□□□□ -0.6
SPIDR-223	ENST00000524033	SAMD9L	Q8IVG5	1584 aa		11.31	□□□□□ -0.6
SPIDR-223	ENST00000524033	YTHDC1	Q96MU7	727 aa	Known RBP	11.3	□□□□□ -0.6
SPIDR-223	ENST00000524033	ABCA6	Q8N139	1617 aa		11.3	□□□□□ -0.6
SPIDR-223	ENST00000524033	TSPY4	P0CV99	314 aa		11.29	□□□□□ -0.6
SPIDR-223	ENST00000524033	TSPY10	P0CW01	314 aa		11.29	□□□□□ -0.6
SPIDR-223	ENST00000524033	A2M	P01023	1474 aa		11.29	□□□□□ -0.6
SPIDR-223	ENST00000524033	FER1L4	A9Z1Z3	1794 aa		11.28	□□□□□ -0.6
SPIDR-223	ENST00000524033	LRRC9	Q6ZRR7	1453 aa		11.28	□□□□□ -0.6
SPIDR-223	ENST00000524033	MBD5	Q9P267	1494 aa		11.28	□□□□□ -0.6
SPIDR-223	ENST00000524033	FAM212A	Q96EL1	285 aa		11.28	□□□□□ -0.6
SPIDR-223	ENST00000524033	CDC42BPA	Q5VT25	1732 aa		11.28	□□□□□ -0.6
SPIDR-223	ENST00000524033	ITSN2	Q9NZM3	1697 aa		11.27	□□□□□ -0.6
SPIDR-223	ENST00000524033	DHX29	Q7Z478	1369 aa	Known RBP	11.27	□□□□□ -0.61
SPIDR-223	ENST00000524033	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.26	□□□□□ -0.61
SPIDR-223	ENST00000524033	KIDINS220	Q9ULH0	1771 aa		11.26	□□□□□ -0.61
SPIDR-223	ENST00000524033	ATP7A	Q04656	1500 aa		11.26	□□□□□ -0.61
SPIDR-223	ENST00000524033	EHBP1L1	Q8N3D4	1523 aa		11.26	□□□□□ -0.61
SPIDR-223	ENST00000524033	KIF3B	O15066	747 aa		11.26	□□□□□ -0.61
SPIDR-223	ENST00000524033	NCOA2	Q15596	1464 aa		11.25	□□□□□ -0.61
SPIDR-223	ENST00000524033	CHADL	Q6NUI6	762 aa		11.25	□□□□□ -0.61
SPIDR-223	ENST00000524033	RAB3GAP2	Q9H2M9	1393 aa		11.25	□□□□□ -0.61
SPIDR-223	ENST00000524033	NPAT	Q14207	1427 aa		11.25	□□□□□ -0.61
SPIDR-223	ENST00000524033	NUBP1	P53384	320 aa		11.24	□□□□□ -0.61
SPIDR-223	ENST00000524033	WASHC2C	Q9Y4E1	1318 aa		11.24	□□□□□ -0.61
SPIDR-223	ENST00000524033	NCKAP5L	Q9HCH0	1330 aa		11.23	□□□□□ -0.61
SPIDR-223	ENST00000524033	RGL2	O15211	777 aa		11.22	□□□□□ -0.61
SPIDR-223	ENST00000524033	SETD5	Q9C0A6	1442 aa		11.22	□□□□□ -0.61
SPIDR-223	ENST00000524033	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
SPIDR-223	ENST00000524033	PREX1	Q8TCU6	1659 aa		11.21	□□□□□ -0.61
SPIDR-223	ENST00000524033	PTPRT	O14522	1441 aa		11.21	□□□□□ -0.61
SPIDR-223	ENST00000524033	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.21	□□□□□ -0.61
SPIDR-223	ENST00000524033	INO80	Q9ULG1	1556 aa	Predicted RBP	11.2	□□□□□ -0.62
SPIDR-223	ENST00000524033	CAMSAP2	Q08AD1	1489 aa		11.2	□□□□□ -0.62
SPIDR-223	ENST00000524033	CCDC141	Q6ZP82	1450 aa		11.2	□□□□□ -0.62
SPIDR-223	ENST00000524033	PTPRK	Q15262	1439 aa		11.2	□□□□□ -0.62
SPIDR-223	ENST00000524033	PRKAR2A	P13861	404 aa	Known RBP	11.2	□□□□□ -0.62
SPIDR-223	ENST00000524033	PLXNC1	O60486	1568 aa		11.2	□□□□□ -0.62
SPIDR-223	ENST00000524033	NCOA1	Q15788	1441 aa		11.19	□□□□□ -0.62
SPIDR-223	ENST00000524033	MNX1	P50219	401 aa	Predicted RBP	11.19	□□□□□ -0.62
SPIDR-223	ENST00000524033	C3	P01024	1663 aa		11.19	□□□□□ -0.62
SPIDR-223	ENST00000524033	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.18	□□□□□ -0.62
SPIDR-223	ENST00000524033	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.18	□□□□□ -0.62
SPIDR-223	ENST00000524033	CHRDL2	Q6WN34	429 aa		11.17	□□□□□ -0.62
SPIDR-223	ENST00000524033	RASEF	Q8IZ41	740 aa		11.16	□□□□□ -0.62
SPIDR-223	ENST00000524033	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-223	ENST00000524033	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-223	ENST00000524033	MIA2	Q96PC5	1412 aa		11.16	□□□□□ -0.62
SPIDR-223	ENST00000524033	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.15	□□□□□ -0.62
SPIDR-223	ENST00000524033	RRP7BP	Q9NSQ0	103 aa		11.15	□□□□□ -0.62
SPIDR-223	ENST00000524033	SETD1B	Q9UPS6	1966 aa	Known RBP	11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms