RNA–Protein interactions for RNA: ENST00000523966.5

SKP1-212, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 899 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-212ENST00000523966 PDE4DQ08499 809 aa8.16□□□□□ -1.1
SKP1-212ENST00000523966 GPR153Q6NV75 609 aa8.16□□□□□ -1.1
SKP1-212ENST00000523966 CERKQ8TCT0 537 aa8.16□□□□□ -1.1
SKP1-212ENST00000523966 PPP4R3BQ5MIZ7 849 aa8.15□□□□□ -1.1
SKP1-212ENST00000523966 CCDC102AQ96A19 550 aa8.15□□□□□ -1.1
SKP1-212ENST00000523966 KDM4FA0A1W2PPD8 638 aa8.14□□□□□ -1.11
SKP1-212ENST00000523966 TSR1Q2NL82 804 aaKnown RBP8.14□□□□□ -1.11
SKP1-212ENST00000523966 CDHR5Q9HBB8 845 aa8.14□□□□□ -1.11
SKP1-212ENST00000523966 FECHP22830 423 aa8.13□□□□□ -1.11
SKP1-212ENST00000523966 C6orf132Q5T0Z8 1188 aa8.13□□□□□ -1.11
SKP1-212ENST00000523966 LHX6Q9UPM6 363 aa8.13□□□□□ -1.11
SKP1-212ENST00000523966 TTLL12Q14166 644 aaPredicted RBP8.11□□□□□ -1.11
SKP1-212ENST00000523966 KCNH8Q96L42 1107 aa8.11□□□□□ -1.11
SKP1-212ENST00000523966 GPBP1L1Q9HC44 474 aaPredicted RBP8.11□□□□□ -1.11
SKP1-212ENST00000523966 GTF3C3Q9Y5Q9 886 aa8.11□□□□□ -1.11
SKP1-212ENST00000523966 HOXB1P14653 301 aaPredicted RBP8.1□□□□□ -1.11
SKP1-212ENST00000523966 LHX8Q68G74 356 aa8.1□□□□□ -1.11
SKP1-212ENST00000523966 ADAM33Q9BZ11 813 aa8.1□□□□□ -1.11
SKP1-212ENST00000523966 KDM4CQ9H3R0 1056 aa8.1□□□□□ -1.11
SKP1-212ENST00000523966 NPDC1Q9NQX5 325 aaPredicted RBP8.1□□□□□ -1.11
SKP1-212ENST00000523966 OATP04181 439 aa8.09□□□□□ -1.11
SKP1-212ENST00000523966 PTPREP23469 700 aa8.08□□□□□ -1.12
SKP1-212ENST00000523966 AMHR2Q16671 573 aa8.08□□□□□ -1.12
SKP1-212ENST00000523966 IL27Q8NEV9 243 aa8.08□□□□□ -1.12
SKP1-212ENST00000523966 OTUD5Q96G74 571 aa8.08□□□□□ -1.12
SKP1-212ENST00000523966 PRSS12P56730 875 aa8.06□□□□□ -1.12
SKP1-212ENST00000523966 PADI6Q6TGC4 694 aa8.06□□□□□ -1.12
SKP1-212ENST00000523966 RBM27Q9P2N5 1060 aaKnown RBP8.06□□□□□ -1.12
SKP1-212ENST00000523966 CLCN1P35523 988 aa8.05□□□□□ -1.12
SKP1-212ENST00000523966 ERICH6Q7L0X2 663 aa8.05□□□□□ -1.12
SKP1-212ENST00000523966 DDRGK1Q96HY6 314 aa8.05□□□□□ -1.12
SKP1-212ENST00000523966 BCL2L12Q9HB09 334 aa8.05□□□□□ -1.12
SKP1-212ENST00000523966 RBM46Q8TBY0 533 aaKnown RBP8.04□□□□□ -1.12
SKP1-212ENST00000523966 CDCA7LQ96GN5 454 aa8.04□□□□□ -1.12
SKP1-212ENST00000523966 PARP9Q8IXQ6 854 aa8.03□□□□□ -1.12
SKP1-212ENST00000523966 ERBB3P21860 1342 aa8.03□□□□□ -1.12
SKP1-212ENST00000523966 PPP1R3GB7ZBB8 358 aa8.02□□□□□ -1.13
SKP1-212ENST00000523966 MDM2Q00987 491 aaPredicted RBP8.01□□□□□ -1.13
SKP1-212ENST00000523966 FAM161AQ3B820 660 aa8.01□□□□□ -1.13
SKP1-212ENST00000523966 GIGYF2Q6Y7W6 1299 aaKnown RBP8.01□□□□□ -1.13
SKP1-212ENST00000523966 PACS2Q86VP3 889 aa8.01□□□□□ -1.13
SKP1-212ENST00000523966 GPCPD1Q9NPB8 672 aa8.01□□□□□ -1.13
SKP1-212ENST00000523966 ADGRG1Q9Y653 693 aa8.01□□□□□ -1.13
SKP1-212ENST00000523966 COL9A1P20849 921 aa8□□□□□ -1.13
SKP1-212ENST00000523966 METTL3Q86U44 580 aaKnown RBP8□□□□□ -1.13
SKP1-212ENST00000523966 KCNK17Q96T54 332 aa8□□□□□ -1.13
SKP1-212ENST00000523966 NBPF26B4DH59 902 aa7.99□□□□□ -1.13
SKP1-212ENST00000523966 EMP3P54852 163 aa7.99□□□□□ -1.13
SKP1-212ENST00000523966 PXYLP1Q8TE99 480 aa7.99□□□□□ -1.13
SKP1-212ENST00000523966 FAM117AQ9C073 453 aa7.99□□□□□ -1.13
SKP1-212ENST00000523966 TTC13Q8NBP0 860 aa7.98□□□□□ -1.13
SKP1-212ENST00000523966 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.97□□□□□ -1.13
SKP1-212ENST00000523966 SSTR3P32745 418 aaPredicted RBP7.97□□□□□ -1.13
SKP1-212ENST00000523966 VARS2Q5ST30 1063 aaKnown RBP7.97□□□□□ -1.13
SKP1-212ENST00000523966 PNMA3Q9UL41 463 aa7.97□□□□□ -1.13
SKP1-212ENST00000523966 ATP1B4Q9UN42 357 aaPredicted RBP7.97□□□□□ -1.13
SKP1-212ENST00000523966 TRIM6-TRIM34B2RNG4 842 aa7.96□□□□□ -1.14
SKP1-212ENST00000523966 NUDT18Q6ZVK8 323 aa7.96□□□□□ -1.14
SKP1-212ENST00000523966 FAM163AQ96GL9 167 aaPredicted RBP7.96□□□□□ -1.14
SKP1-212ENST00000523966 PHOX2BQ99453 314 aa7.96□□□□□ -1.14
SKP1-212ENST00000523966 ARHGAP33O14559 1287 aa7.95□□□□□ -1.14
SKP1-212ENST00000523966 ST18O60284 1047 aa7.95□□□□□ -1.14
SKP1-212ENST00000523966 ONECUT3O60422 494 aaPredicted RBP7.95□□□□□ -1.14
SKP1-212ENST00000523966 TATDN2Q93075 761 aa7.95□□□□□ -1.14
SKP1-212ENST00000523966 HDGFP51858 240 aaKnown RBP7.94□□□□□ -1.14
SKP1-212ENST00000523966 RSPH6AQ9H0K4 717 aa7.94□□□□□ -1.14
SKP1-212ENST00000523966 TSKSQ9UJT2 592 aa7.94□□□□□ -1.14
SKP1-212ENST00000523966 RCCD1A6NED2 376 aa7.93□□□□□ -1.14
SKP1-212ENST00000523966 MS4A1P11836 297 aa7.93□□□□□ -1.14
SKP1-212ENST00000523966 DNAJB2P25686 324 aa7.93□□□□□ -1.14
SKP1-212ENST00000523966 PBX2P40425 430 aa7.93□□□□□ -1.14
SKP1-212ENST00000523966 NLRP7Q8WX94 980 aa7.93□□□□□ -1.14
SKP1-212ENST00000523966 MARVELD3Q96A59 401 aa7.93□□□□□ -1.14
SKP1-212ENST00000523966 REPIN1Q9BWE0 567 aaKnown RBP7.93□□□□□ -1.14
SKP1-212ENST00000523966 FAM217BQ9NTX9 383 aaPredicted RBP7.93□□□□□ -1.14
SKP1-212ENST00000523966 FAM205CA6NFA0 338 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 SLC4A3P48751 1232 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 PSEN2P49810 448 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 PROX2Q3B8N5 592 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 C14orf37Q86TY3 774 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 SULF1Q8IWU6 871 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 PCMTD1Q96MG8 357 aaPredicted RBP7.92□□□□□ -1.14
SKP1-212ENST00000523966 EYA1Q99502 592 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 BEGAINQ9BUH8 593 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 TMUB1Q9BVT8 246 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 KIAA1468Q9P260 1216 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 FAM198AQ9UFP1 575 aa7.92□□□□□ -1.14
SKP1-212ENST00000523966 PLEKHG3A1L390 1219 aa7.91□□□□□ -1.14
SKP1-212ENST00000523966 RSPH4AQ5TD94 716 aa7.91□□□□□ -1.14
SKP1-212ENST00000523966 ZBED2Q9BTP6 218 aa7.91□□□□□ -1.14
SKP1-212ENST00000523966 DIXDC1Q155Q3 683 aa7.9□□□□□ -1.14
SKP1-212ENST00000523966 GOPCQ9HD26 462 aa7.9□□□□□ -1.14
SKP1-212ENST00000523966 ZNF687Q8N1G0 1237 aa7.89□□□□□ -1.15
SKP1-212ENST00000523966 RABGEF1Q9UJ41 708 aa7.89□□□□□ -1.15
SKP1-212ENST00000523966 AXIN2Q9Y2T1 843 aa7.89□□□□□ -1.15
SKP1-212ENST00000523966 DDX11L8A8MPP1 907 aa7.88□□□□□ -1.15
SKP1-212ENST00000523966 SMAPO00193 183 aa7.88□□□□□ -1.15
SKP1-212ENST00000523966 SLC4A5Q9BY07 1137 aa7.88□□□□□ -1.15
SKP1-212ENST00000523966 SH3D19Q5HYK7 790 aa7.87□□□□□ -1.15
SKP1-212ENST00000523966 RDH13Q8NBN7 331 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms