RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 KDM6BO15054 1643 aa13.49□□□□□ -0.25
MCF2-209ENST00000520602 SCAPERQ9BY12 1400 aa13.48□□□□□ -0.25
MCF2-209ENST00000520602 ZBED9Q6R2W3 1325 aa13.48□□□□□ -0.25
MCF2-209ENST00000520602 MYBBP1AQ9BQG0 1328 aaKnown RBP13.48□□□□□ -0.25
MCF2-209ENST00000520602 NEUROD2Q15784 382 aa13.47□□□□□ -0.25
MCF2-209ENST00000520602 NPM2Q86SE8 214 aaKnown RBP13.47□□□□□ -0.25
MCF2-209ENST00000520602 STK26Q9P289 416 aa13.47□□□□□ -0.25
MCF2-209ENST00000520602 TRAK1Q9UPV9 953 aa13.46□□□□□ -0.25
MCF2-209ENST00000520602 PLEKHH2Q8IVE3 1493 aa13.46□□□□□ -0.26
MCF2-209ENST00000520602 NUDCQ9Y266 331 aa13.45□□□□□ -0.26
MCF2-209ENST00000520602 DNMT1P26358 1616 aaKnown RBP13.45□□□□□ -0.26
MCF2-209ENST00000520602 ARID4BQ4LE39 1312 aaPredicted RBP13.45□□□□□ -0.26
MCF2-209ENST00000520602 DAXXQ9UER7 740 aaPredicted RBP13.45□□□□□ -0.26
MCF2-209ENST00000520602 PZPP20742 1482 aa13.44□□□□□ -0.26
MCF2-209ENST00000520602 RBM19Q9Y4C8 960 aaKnown RBP13.44□□□□□ -0.26
MCF2-209ENST00000520602 ITSN2Q9NZM3 1697 aa13.43□□□□□ -0.26
MCF2-209ENST00000520602 CFAP70Q5T0N1 1121 aa13.42□□□□□ -0.26
MCF2-209ENST00000520602 POGKQ9P215 609 aa13.42□□□□□ -0.26
MCF2-209ENST00000520602 LRRIQ1Q96JM4 1722 aa13.41□□□□□ -0.26
MCF2-209ENST00000520602 SYCP2Q9BX26 1530 aa13.4□□□□□ -0.26
MCF2-209ENST00000520602 RCAN3Q9UKA8 241 aa13.4□□□□□ -0.26
MCF2-209ENST00000520602 RAPGEF3O95398 923 aa13.4□□□□□ -0.26
MCF2-209ENST00000520602 ANP32AP39687 249 aaKnown RBP13.4□□□□□ -0.26
MCF2-209ENST00000520602 SRPK2P78362 688 aaKnown RBP13.39□□□□□ -0.27
MCF2-209ENST00000520602 MORC1Q86VD1 984 aa13.39□□□□□ -0.27
MCF2-209ENST00000520602 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
MCF2-209ENST00000520602 NEFMP07197 916 aa13.39□□□□□ -0.27
MCF2-209ENST00000520602 PNISRQ8TF01 805 aaKnown RBP13.39□□□□□ -0.27
MCF2-209ENST00000520602 CCDC146Q8IYE0 955 aa13.38□□□□□ -0.27
MCF2-209ENST00000520602 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.38□□□□□ -0.27
MCF2-209ENST00000520602 EIF3AQ14152 1382 aaKnown RBP13.38□□□□□ -0.27
MCF2-209ENST00000520602 PPM1GO15355 546 aaPredicted RBP13.38□□□□□ -0.27
MCF2-209ENST00000520602 TMEM132EQ6IEE7 984 aa13.37□□□□□ -0.27
MCF2-209ENST00000520602 GCC2Q8IWJ2 1684 aa13.37□□□□□ -0.27
MCF2-209ENST00000520602 ERICH6BQ5W0A0 696 aa13.36□□□□□ -0.27
MCF2-209ENST00000520602 PLCH2O75038 1416 aa13.36□□□□□ -0.27
MCF2-209ENST00000520602 BCL11AQ9H165 835 aa13.36□□□□□ -0.27
MCF2-209ENST00000520602 TEX14Q8IWB6 1497 aa13.36□□□□□ -0.27
MCF2-209ENST00000520602 TRAPPC8Q9Y2L5 1435 aa13.36□□□□□ -0.27
MCF2-209ENST00000520602 CFAP53Q96M91 514 aa13.35□□□□□ -0.27
MCF2-209ENST00000520602 ADGRL2O95490 1459 aa13.35□□□□□ -0.27
MCF2-209ENST00000520602 ABCC10Q5T3U5 1492 aa13.35□□□□□ -0.27
MCF2-209ENST00000520602 ABCA8O94911 1581 aa13.35□□□□□ -0.27
MCF2-209ENST00000520602 FAM69CQ0P6D2 419 aa13.34□□□□□ -0.27
MCF2-209ENST00000520602 DENND4BO75064 1496 aaPredicted RBP13.33□□□□□ -0.27
MCF2-209ENST00000520602 U2SURPO15042 1029 aaKnown RBP13.33□□□□□ -0.28
MCF2-209ENST00000520602 PLIN1O60240 522 aa13.33□□□□□ -0.28
MCF2-209ENST00000520602 FAM135AQ9P2D6 1515 aa13.32□□□□□ -0.28
MCF2-209ENST00000520602 SHANK2Q9UPX8 1470 aa13.32□□□□□ -0.28
MCF2-209ENST00000520602 BRD4O60885 1362 aaPredicted RBP13.32□□□□□ -0.28
MCF2-209ENST00000520602 CDCA7LQ96GN5 454 aa13.32□□□□□ -0.28
MCF2-209ENST00000520602 FANCAO15360 1455 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 ADGRL1O94910 1474 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 ABCC2Q92887 1545 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 MBD5Q9P267 1494 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 ERBINQ96RT1 1412 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 STAC3Q96MF2 364 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 ADAMTS8Q9UP79 889 aa13.31□□□□□ -0.28
MCF2-209ENST00000520602 VGFO15240 615 aaPredicted RBP13.3□□□□□ -0.28
MCF2-209ENST00000520602 FRAT1Q92837 279 aaPredicted RBP13.3□□□□□ -0.28
MCF2-209ENST00000520602 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
MCF2-209ENST00000520602 PDE3BQ13370 1112 aa13.29□□□□□ -0.28
MCF2-209ENST00000520602 CENPJQ9HC77 1338 aaPredicted RBP13.29□□□□□ -0.28
MCF2-209ENST00000520602 EXOC6Q8TAG9 804 aa13.28□□□□□ -0.28
MCF2-209ENST00000520602 CD109Q6YHK3 1445 aa13.28□□□□□ -0.28
MCF2-209ENST00000520602 GOLGA2Q08379 1002 aa13.28□□□□□ -0.28
MCF2-209ENST00000520602 RALGAPBQ86X10 1494 aa13.28□□□□□ -0.28
MCF2-209ENST00000520602 APAF1O14727 1248 aa13.27□□□□□ -0.28
MCF2-209ENST00000520602 ADGRF5Q8IZF2 1346 aa13.27□□□□□ -0.28
MCF2-209ENST00000520602 ERCC6L2Q5T890 1561 aa13.27□□□□□ -0.28
MCF2-209ENST00000520602 U2AF1L5P0DN76 240 aaPredicted RBP13.27□□□□□ -0.29
MCF2-209ENST00000520602 U2AF1Q01081 240 aaKnown RBP eCLIP13.27□□□□□ -0.29
MCF2-209ENST00000520602 DISP3Q9P2K9 1392 aa13.27□□□□□ -0.29
MCF2-209ENST00000520602 PPP2R1AP30153 589 aa13.27□□□□□ -0.29
MCF2-209ENST00000520602 RRP7AQ9Y3A4 280 aaKnown RBP13.27□□□□□ -0.29
MCF2-209ENST00000520602 RRP1P56182 461 aaKnown RBP13.26□□□□□ -0.29
MCF2-209ENST00000520602 ASXL2Q76L83 1435 aa13.26□□□□□ -0.29
MCF2-209ENST00000520602 ZBTB47Q9UFB7 747 aaPredicted RBP13.26□□□□□ -0.29
MCF2-209ENST00000520602 MINK1Q8N4C8 1332 aaPredicted RBP13.26□□□□□ -0.29
MCF2-209ENST00000520602 PRAG1Q86YV5 1406 aa13.26□□□□□ -0.29
MCF2-209ENST00000520602 SPATA31E1Q6ZUB1 1445 aa13.25□□□□□ -0.29
MCF2-209ENST00000520602 ANP32EQ9BTT0 268 aa13.25□□□□□ -0.29
MCF2-209ENST00000520602 SLC12A5Q9H2X9 1139 aa13.25□□□□□ -0.29
MCF2-209ENST00000520602 NBR1Q14596 966 aa13.25□□□□□ -0.29
MCF2-209ENST00000520602 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.25□□□□□ -0.29
MCF2-209ENST00000520602 DUOX2Q9NRD8 1548 aa13.25□□□□□ -0.29
MCF2-209ENST00000520602 RGS3P49796 1198 aa13.24□□□□□ -0.29
MCF2-209ENST00000520602 DHX29Q7Z478 1369 aaKnown RBP13.24□□□□□ -0.29
MCF2-209ENST00000520602 MAPK8IP3Q9UPT6 1336 aa13.23□□□□□ -0.29
MCF2-209ENST00000520602 TESK2Q96S53 571 aa13.23□□□□□ -0.29
MCF2-209ENST00000520602 WDR7Q9Y4E6 1490 aa13.23□□□□□ -0.29
MCF2-209ENST00000520602 CHD1O14646 1710 aa13.23□□□□□ -0.29
MCF2-209ENST00000520602 CABP2Q9NPB3 220 aa13.23□□□□□ -0.29
MCF2-209ENST00000520602 LAS1LQ9Y4W2 734 aaKnown RBP13.23□□□□□ -0.29
MCF2-209ENST00000520602 SAMD9LQ8IVG5 1584 aa13.22□□□□□ -0.29
MCF2-209ENST00000520602 EVC2Q86UK5 1308 aa13.22□□□□□ -0.29
MCF2-209ENST00000520602 ADGBQ8N7X0 1667 aa13.21□□□□□ -0.29
MCF2-209ENST00000520602 PLEKHG5O94827 1062 aa13.21□□□□□ -0.29
MCF2-209ENST00000520602 UHRF1BP1Q6BDS2 1440 aa13.21□□□□□ -0.3
MCF2-209ENST00000520602 SOX12O15370 315 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms