RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.05
CPNE3-203ENST00000517490 CDK11BP21127 795 aaKnown RBP8.52□□□□□ -1.05
CPNE3-203ENST00000517490 SLKQ9H2G2 1235 aaPredicted RBP8.52□□□□□ -1.05
CPNE3-203ENST00000517490 PNNQ9H307 717 aaKnown RBP8.52□□□□□ -1.05
CPNE3-203ENST00000517490 MAPK8IP3Q9UPT6 1336 aa8.52□□□□□ -1.05
CPNE3-203ENST00000517490 GOLGA6L3A6NEY3 463 aa8.52□□□□□ -1.05
CPNE3-203ENST00000517490 PMFBP1Q8TBY8 1022 aa8.52□□□□□ -1.05
CPNE3-203ENST00000517490 PTPRKQ15262 1439 aa8.52□□□□□ -1.05
CPNE3-203ENST00000517490 HSCBQ8IWL3 235 aa8.51□□□□□ -1.05
CPNE3-203ENST00000517490 PANK3Q9H999 370 aa8.51□□□□□ -1.05
CPNE3-203ENST00000517490 ABCA10Q8WWZ4 1543 aa8.51□□□□□ -1.05
CPNE3-203ENST00000517490 WASHC2CQ9Y4E1 1318 aa8.51□□□□□ -1.05
CPNE3-203ENST00000517490 KIAA1107Q9UPP5 1409 aa8.51□□□□□ -1.05
CPNE3-203ENST00000517490 RPRD2Q5VT52 1461 aaKnown RBP8.51□□□□□ -1.05
CPNE3-203ENST00000517490 CUL7Q14999 1698 aa8.5□□□□□ -1.05
CPNE3-203ENST00000517490 HECW1Q76N89 1606 aa8.5□□□□□ -1.05
CPNE3-203ENST00000517490 RWDD1Q9H446 243 aaPredicted RBP8.5□□□□□ -1.05
CPNE3-203ENST00000517490 BRPF3Q9ULD4 1205 aa8.5□□□□□ -1.05
CPNE3-203ENST00000517490 DAPK1P53355 1430 aa8.5□□□□□ -1.05
CPNE3-203ENST00000517490 EIF3AQ14152 1382 aaKnown RBP8.5□□□□□ -1.05
CPNE3-203ENST00000517490 WDR62O43379 1518 aa8.5□□□□□ -1.05
CPNE3-203ENST00000517490 CCDC144AA2RUR9 1427 aa8.5□□□□□ -1.05
CPNE3-203ENST00000517490 ZNF644Q9H582 1327 aaPredicted RBP8.5□□□□□ -1.05
CPNE3-203ENST00000517490 POLA1P09884 1462 aaPredicted RBP8.5□□□□□ -1.05
CPNE3-203ENST00000517490 CARMIL2Q6F5E8 1435 aa8.49□□□□□ -1.05
CPNE3-203ENST00000517490 CGNL1Q0VF96 1302 aa8.49□□□□□ -1.05
CPNE3-203ENST00000517490 PTMSP20962 102 aa8.49□□□□□ -1.05
CPNE3-203ENST00000517490 NEUROD2Q15784 382 aa8.49□□□□□ -1.05
CPNE3-203ENST00000517490 RSPH4AQ5TD94 716 aa8.49□□□□□ -1.05
CPNE3-203ENST00000517490 CDCA7LQ96GN5 454 aa8.49□□□□□ -1.05
CPNE3-203ENST00000517490 TOPBP1Q92547 1522 aa8.48□□□□□ -1.05
CPNE3-203ENST00000517490 NGEFQ8N5V2 710 aa8.48□□□□□ -1.05
CPNE3-203ENST00000517490 CENPJQ9HC77 1338 aaPredicted RBP8.48□□□□□ -1.05
CPNE3-203ENST00000517490 ANKRD50Q9ULJ7 1429 aa8.48□□□□□ -1.05
CPNE3-203ENST00000517490 E9PSI1 815 aa8.48□□□□□ -1.05
CPNE3-203ENST00000517490 CHGAP10645 457 aaKnown RBP8.48□□□□□ -1.05
CPNE3-203ENST00000517490 FAM43AQ8N2R8 423 aa8.48□□□□□ -1.05
CPNE3-203ENST00000517490 THOC2Q8NI27 1593 aaKnown RBP8.48□□□□□ -1.05
CPNE3-203ENST00000517490 HSP90AB1P08238 724 aaKnown RBP8.48□□□□□ -1.05
CPNE3-203ENST00000517490 MYH16Q9H6N6 1097 aa8.48□□□□□ -1.05
CPNE3-203ENST00000517490 GBP4Q96PP9 640 aa8.46□□□□□ -1.06
CPNE3-203ENST00000517490 CHMP4BQ9H444 224 aaKnown RBP8.46□□□□□ -1.06
CPNE3-203ENST00000517490 EPRSP07814 1512 aaKnown RBP8.46□□□□□ -1.06
CPNE3-203ENST00000517490 RNF123Q5XPI4 1314 aa8.46□□□□□ -1.06
CPNE3-203ENST00000517490 SPRYD3Q8NCJ5 442 aa8.46□□□□□ -1.06
CPNE3-203ENST00000517490 GZF1Q9H116 711 aaPredicted RBP8.46□□□□□ -1.06
CPNE3-203ENST00000517490 FRAT2O75474 233 aaPredicted RBP8.45□□□□□ -1.06
CPNE3-203ENST00000517490 CCDC146Q8IYE0 955 aa8.45□□□□□ -1.06
CPNE3-203ENST00000517490 UGGT2Q9NYU1 1516 aa8.45□□□□□ -1.06
CPNE3-203ENST00000517490 GRIN2BQ13224 1484 aa8.45□□□□□ -1.06
CPNE3-203ENST00000517490 AAMPQ13685 434 aa8.45□□□□□ -1.06
CPNE3-203ENST00000517490 DDX11L8A8MPP1 907 aa8.44□□□□□ -1.06
CPNE3-203ENST00000517490 HNRNPMP52272 730 aaKnown RBP eCLIP8.44□□□□□ -1.06
CPNE3-203ENST00000517490 MORC1Q86VD1 984 aa8.44□□□□□ -1.06
CPNE3-203ENST00000517490 TCOF1Q13428 1488 aaKnown RBP8.44□□□□□ -1.06
CPNE3-203ENST00000517490 PLEKHH2Q8IVE3 1493 aa8.44□□□□□ -1.06
CPNE3-203ENST00000517490 ADAMTS8Q9UP79 889 aa8.43□□□□□ -1.06
CPNE3-203ENST00000517490 ABCC5O15440 1437 aa8.43□□□□□ -1.06
CPNE3-203ENST00000517490 NCLP19338 710 aaKnown RBP8.43□□□□□ -1.06
CPNE3-203ENST00000517490 SNAPC4Q5SXM2 1469 aa8.43□□□□□ -1.06
CPNE3-203ENST00000517490 MSNP26038 577 aaKnown RBP8.42□□□□□ -1.06
CPNE3-203ENST00000517490 HSP90AA2PQ14568 343 aaPredicted RBP8.42□□□□□ -1.06
CPNE3-203ENST00000517490 APAF1O14727 1248 aa8.42□□□□□ -1.06
CPNE3-203ENST00000517490 MFAP1P55081 439 aaKnown RBP8.42□□□□□ -1.06
CPNE3-203ENST00000517490 TNNT2P45379 298 aaPredicted RBP8.41□□□□□ -1.06
CPNE3-203ENST00000517490 DHX29Q7Z478 1369 aaKnown RBP8.41□□□□□ -1.06
CPNE3-203ENST00000517490 CLUAP1Q96AJ1 413 aa8.41□□□□□ -1.06
CPNE3-203ENST00000517490 CHMP5Q9NZZ3 219 aa8.41□□□□□ -1.06
CPNE3-203ENST00000517490 COG6Q9Y2V7 657 aa8.41□□□□□ -1.06
CPNE3-203ENST00000517490 CDK13Q14004 1512 aaKnown RBP8.41□□□□□ -1.06
CPNE3-203ENST00000517490 HMGB1P09429 215 aaKnown RBP8.41□□□□□ -1.06
CPNE3-203ENST00000517490 CASC1Q6TDU7 716 aa8.41□□□□□ -1.06
CPNE3-203ENST00000517490 KANK1Q14678 1352 aa8.41□□□□□ -1.06
CPNE3-203ENST00000517490 IPO8O15397 1037 aaKnown RBP8.4□□□□□ -1.06
CPNE3-203ENST00000517490 ADRA2BP18089 450 aa8.4□□□□□ -1.06
CPNE3-203ENST00000517490 TROQ12816 1431 aaPredicted RBP8.4□□□□□ -1.06
CPNE3-203ENST00000517490 PDE3AQ14432 1141 aa8.4□□□□□ -1.07
CPNE3-203ENST00000517490 NINLQ9Y2I6 1382 aa8.4□□□□□ -1.07
CPNE3-203ENST00000517490 PPP2R1AP30153 589 aa8.4□□□□□ -1.07
CPNE3-203ENST00000517490 SKOR2Q2VWA4 1001 aaPredicted RBP8.4□□□□□ -1.07
CPNE3-203ENST00000517490 PAXIP1Q6ZW49 1069 aaPredicted RBP8.39□□□□□ -1.07
CPNE3-203ENST00000517490 STAC3Q96MF2 364 aa8.39□□□□□ -1.07
CPNE3-203ENST00000517490 CTTNBP2Q8WZ74 1663 aa8.39□□□□□ -1.07
CPNE3-203ENST00000517490 PTMAP06454 111 aaKnown RBP8.38□□□□□ -1.07
CPNE3-203ENST00000517490 DNAJC5BQ9UF47 199 aa8.38□□□□□ -1.07
CPNE3-203ENST00000517490 MRE11P49959 708 aa8.38□□□□□ -1.07
CPNE3-203ENST00000517490 ITPRIPQ8IWB1 547 aa8.38□□□□□ -1.07
CPNE3-203ENST00000517490 C9orf84Q5VXU9 1444 aa8.38□□□□□ -1.07
CPNE3-203ENST00000517490 RALGAPBQ86X10 1494 aa8.38□□□□□ -1.07
CPNE3-203ENST00000517490 NESP48681 1621 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 LRPPRCP42704 1394 aaKnown RBP8.37□□□□□ -1.07
CPNE3-203ENST00000517490 MAGI1Q96QZ7 1491 aaPredicted RBP8.37□□□□□ -1.07
CPNE3-203ENST00000517490 IQGAP2Q13576 1575 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 ERBINQ96RT1 1412 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 U2SURPO15042 1029 aaKnown RBP8.37□□□□□ -1.07
CPNE3-203ENST00000517490 JPH4Q96JJ6 628 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 NBPF1Q3BBV0 1214 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 SMC4Q9NTJ3 1288 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 ZKSCAN2Q63HK3 967 aa8.37□□□□□ -1.07
CPNE3-203ENST00000517490 KLHL34Q8N239 644 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms