RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 MRPL50Q8N5N7 158 aaKnown RBP11.28□□□□□ -0.6
CPNE3-202ENST00000517391 DSG2Q14126 1118 aa11.27□□□□□ -0.61
CPNE3-202ENST00000517391 LARP6Q9BRS8 491 aaKnown RBP11.27□□□□□ -0.61
CPNE3-202ENST00000517391 LAPTM4AQ15012 233 aa11.26□□□□□ -0.61
CPNE3-202ENST00000517391 BCL2L12Q9HB09 334 aa11.26□□□□□ -0.61
CPNE3-202ENST00000517391 ITGBL1O95965 494 aaPredicted RBP11.25□□□□□ -0.61
CPNE3-202ENST00000517391 MFSD10Q14728 455 aa11.23□□□□□ -0.61
CPNE3-202ENST00000517391 PTPREP23469 700 aa11.22□□□□□ -0.61
CPNE3-202ENST00000517391 PPP1R15BQ5SWA1 713 aa11.22□□□□□ -0.61
CPNE3-202ENST00000517391 NBPF3Q9H094 633 aa11.22□□□□□ -0.61
CPNE3-202ENST00000517391 ZNF454Q8N9F8 522 aa11.21□□□□□ -0.61
CPNE3-202ENST00000517391 DDX27Q96GQ7 796 aaKnown RBP11.21□□□□□ -0.61
CPNE3-202ENST00000517391 ZBED2Q9BTP6 218 aa11.2□□□□□ -0.62
CPNE3-202ENST00000517391 ARIH1Q9Y4X5 557 aaPredicted RBP11.19□□□□□ -0.62
CPNE3-202ENST00000517391 TESPA1A2RU30 521 aaPredicted RBP11.18□□□□□ -0.62
CPNE3-202ENST00000517391 SMYD5Q6GMV2 418 aa11.18□□□□□ -0.62
CPNE3-202ENST00000517391 TRAF7Q6Q0C0 670 aa11.18□□□□□ -0.62
CPNE3-202ENST00000517391 SEMA3EO15041 775 aa11.16□□□□□ -0.62
CPNE3-202ENST00000517391 CAMK2BQ13554 666 aa11.15□□□□□ -0.62
CPNE3-202ENST00000517391 FOSBP53539 338 aa11.12□□□□□ -0.63
CPNE3-202ENST00000517391 TMEM132AQ24JP5 1023 aa11.12□□□□□ -0.63
CPNE3-202ENST00000517391 NYAP1Q6ZVC0 841 aa11.12□□□□□ -0.63
CPNE3-202ENST00000517391 ANKK1Q8NFD2 765 aa11.12□□□□□ -0.63
CPNE3-202ENST00000517391 OXER1Q8TDS5 423 aa11.12□□□□□ -0.63
CPNE3-202ENST00000517391 UPF1Q92900 1129 aaKnown RBP eCLIP11.12□□□□□ -0.63
CPNE3-202ENST00000517391 LCE2BO14633 110 aa11.11□□□□□ -0.63
CPNE3-202ENST00000517391 GFRA3O60609 400 aa11.1□□□□□ -0.63
CPNE3-202ENST00000517391 KCNC4Q03721 635 aa11.1□□□□□ -0.63
CPNE3-202ENST00000517391 ZC3H15Q8WU90 426 aaKnown RBP11.1□□□□□ -0.63
CPNE3-202ENST00000517391 EMILIN3Q9NT22 766 aa11.07□□□□□ -0.64
CPNE3-202ENST00000517391 JPH4Q96JJ6 628 aa11.05□□□□□ -0.64
CPNE3-202ENST00000517391 RABGEF1Q9UJ41 708 aa11.05□□□□□ -0.64
CPNE3-202ENST00000517391 GTF3C3Q9Y5Q9 886 aa11.05□□□□□ -0.64
CPNE3-202ENST00000517391 ZDHHC16Q969W1 377 aa11.04□□□□□ -0.64
CPNE3-202ENST00000517391 ERICH6Q7L0X2 663 aa11.03□□□□□ -0.64
CPNE3-202ENST00000517391 SOWAHBA6NEL2 793 aa11.02□□□□□ -0.65
CPNE3-202ENST00000517391 BCAMP50895 628 aa11.02□□□□□ -0.65
CPNE3-202ENST00000517391 MAP3K9P80192 1104 aa11.02□□□□□ -0.65
CPNE3-202ENST00000517391 LAPTM4BQ86VI4 370 aa11.01□□□□□ -0.65
CPNE3-202ENST00000517391 ADAM33Q9BZ11 813 aa11.01□□□□□ -0.65
CPNE3-202ENST00000517391 ANO8Q9HCE9 1232 aaPredicted RBP11.01□□□□□ -0.65
CPNE3-202ENST00000517391 SPDYE16A6NNV3 312 aaPredicted RBP11□□□□□ -0.65
CPNE3-202ENST00000517391 NRG2O14511 850 aaPredicted RBP11□□□□□ -0.65
CPNE3-202ENST00000517391 ZMYND10O75800 440 aa11□□□□□ -0.65
CPNE3-202ENST00000517391 DPYSL4O14531 572 aa10.99□□□□□ -0.65
CPNE3-202ENST00000517391 PPP1R3GB7ZBB8 358 aa10.98□□□□□ -0.65
CPNE3-202ENST00000517391 ZNF787Q6DD87 383 aa10.98□□□□□ -0.65
CPNE3-202ENST00000517391 EVI5O60447 810 aa10.97□□□□□ -0.65
CPNE3-202ENST00000517391 BRPF1P55201 1214 aaPredicted RBP10.97□□□□□ -0.65
CPNE3-202ENST00000517391 SLC24A3Q9HC58 644 aa10.97□□□□□ -0.65
CPNE3-202ENST00000517391 BARGINQ6ZT62 677 aa10.96□□□□□ -0.65
CPNE3-202ENST00000517391 WBP1LQ9NX94 342 aa10.96□□□□□ -0.65
CPNE3-202ENST00000517391 ZFRQ96KR1 1074 aaKnown RBP10.94□□□□□ -0.66
CPNE3-202ENST00000517391 PDIA6Q15084 440 aa10.93□□□□□ -0.66
CPNE3-202ENST00000517391 NEUROD2Q15784 382 aa10.93□□□□□ -0.66
CPNE3-202ENST00000517391 MLLT3P42568 568 aaPredicted RBP10.92□□□□□ -0.66
CPNE3-202ENST00000517391 PROX2Q3B8N5 592 aa10.92□□□□□ -0.66
CPNE3-202ENST00000517391 GPIHBP1Q8IV16 184 aa10.91□□□□□ -0.66
CPNE3-202ENST00000517391 ZNF775Q96BV0 537 aaPredicted RBP10.91□□□□□ -0.66
CPNE3-202ENST00000517391 RBM26Q5T8P6 1007 aaKnown RBP10.9□□□□□ -0.66
CPNE3-202ENST00000517391 PRKD2Q9BZL6 878 aa10.9□□□□□ -0.66
CPNE3-202ENST00000517391 AK7Q96M32 723 aa10.88□□□□□ -0.67
CPNE3-202ENST00000517391 TSR3Q9UJK0 312 aaKnown RBP10.88□□□□□ -0.67
CPNE3-202ENST00000517391 KRI1Q8N9T8 703 aaKnown RBP10.87□□□□□ -0.67
CPNE3-202ENST00000517391 TIMELESSQ9UNS1 1208 aa10.87□□□□□ -0.67
CPNE3-202ENST00000517391 V9GY48 417 aaPredicted RBP10.87□□□□□ -0.67
CPNE3-202ENST00000517391 ONECUT3O60422 494 aaPredicted RBP10.86□□□□□ -0.67
CPNE3-202ENST00000517391 KIAA1468Q9P260 1216 aa10.86□□□□□ -0.67
CPNE3-202ENST00000517391 DAXXQ9UER7 740 aaPredicted RBP10.86□□□□□ -0.67
CPNE3-202ENST00000517391 COL9A1P20849 921 aa10.85□□□□□ -0.67
CPNE3-202ENST00000517391 DDX12PQ92771 950 aa10.83□□□□□ -0.68
CPNE3-202ENST00000517391 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.83□□□□□ -0.68
CPNE3-202ENST00000517391 HPS5Q9UPZ3 1129 aa10.83□□□□□ -0.68
CPNE3-202ENST00000517391 FBXW7Q969H0 707 aa10.81□□□□□ -0.68
CPNE3-202ENST00000517391 LRCH3Q96II8 777 aa10.81□□□□□ -0.68
CPNE3-202ENST00000517391 PCDHGA10Q9Y5H3 936 aa10.81□□□□□ -0.68
CPNE3-202ENST00000517391 FAM98CQ17RN3 349 aaKnown RBP10.8□□□□□ -0.68
CPNE3-202ENST00000517391 SEPT9Q9UHD8 586 aaPredicted RBP10.79□□□□□ -0.68
CPNE3-202ENST00000517391 PDZRN3Q9UPQ7 1066 aa10.79□□□□□ -0.68
CPNE3-202ENST00000517391 PHF14O94880 888 aa10.78□□□□□ -0.68
CPNE3-202ENST00000517391 GRXCR2A6NFK2 248 aa10.77□□□□□ -0.69
CPNE3-202ENST00000517391 TYW1BQ6NUM6 668 aa10.77□□□□□ -0.69
CPNE3-202ENST00000517391 TJAP1Q5JTD0 557 aa10.75□□□□□ -0.69
CPNE3-202ENST00000517391 PPP1R18Q6NYC8 613 aa10.75□□□□□ -0.69
CPNE3-202ENST00000517391 RBM33Q96EV2 1170 aaKnown RBP10.75□□□□□ -0.69
CPNE3-202ENST00000517391 EPAS1Q99814 870 aa10.75□□□□□ -0.69
CPNE3-202ENST00000517391 TRIM66O15016 1216 aa10.74□□□□□ -0.69
CPNE3-202ENST00000517391 NUTM2FA1L443 756 aa10.73□□□□□ -0.69
CPNE3-202ENST00000517391 PPP4CP60510 307 aa10.73□□□□□ -0.69
CPNE3-202ENST00000517391 C14orf37Q86TY3 774 aa10.73□□□□□ -0.69
CPNE3-202ENST00000517391 MINK1Q8N4C8 1332 aaPredicted RBP10.73□□□□□ -0.69
CPNE3-202ENST00000517391 TRIM6-TRIM34B2RNG4 842 aa10.72□□□□□ -0.69
CPNE3-202ENST00000517391 GPR37O15354 613 aa10.71□□□□□ -0.69
CPNE3-202ENST00000517391 OSBPP22059 807 aa10.71□□□□□ -0.69
CPNE3-202ENST00000517391 PDE4DQ08499 809 aa10.71□□□□□ -0.69
CPNE3-202ENST00000517391 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.71□□□□□ -0.69
CPNE3-202ENST00000517391 IL21Q9HBE4 155 aa10.7□□□□□ -0.7
CPNE3-202ENST00000517391 PRIM1P49642 420 aaKnown RBP10.69□□□□□ -0.7
CPNE3-202ENST00000517391 KDM4CQ9H3R0 1056 aa10.69□□□□□ -0.7
CPNE3-202ENST00000517391 MAP3K7O43318 606 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms