RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KDM2AQ9Y2K7 1162 aa12.9□□□□□ -0.34
VCAN-210ENST00000513960 CDC42BPAQ5VT25 1732 aa12.9□□□□□ -0.34
VCAN-210ENST00000513960 CARD11Q9BXL7 1154 aa12.89□□□□□ -0.35
VCAN-210ENST00000513960 TMC1Q8TDI8 760 aa12.87□□□□□ -0.35
VCAN-210ENST00000513960 DCAF11Q8TEB1 546 aa12.87□□□□□ -0.35
VCAN-210ENST00000513960 ZBED9Q6R2W3 1325 aa12.86□□□□□ -0.35
VCAN-210ENST00000513960 CCDC141Q6ZP82 1450 aa12.85□□□□□ -0.35
VCAN-210ENST00000513960 MBD5Q9P267 1494 aa12.85□□□□□ -0.35
VCAN-210ENST00000513960 ARID4BQ4LE39 1312 aaPredicted RBP12.85□□□□□ -0.35
VCAN-210ENST00000513960 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.85□□□□□ -0.35
VCAN-210ENST00000513960 ARHGEF5Q12774 1597 aa12.83□□□□□ -0.36
VCAN-210ENST00000513960 NUDCQ9Y266 331 aa12.83□□□□□ -0.36
VCAN-210ENST00000513960 ROCK2O75116 1388 aaKnown RBP12.82□□□□□ -0.36
VCAN-210ENST00000513960 UHRF1BP1Q6BDS2 1440 aa12.82□□□□□ -0.36
VCAN-210ENST00000513960 ARHGAP5Q13017 1502 aa12.81□□□□□ -0.36
VCAN-210ENST00000513960 RALGAPBQ86X10 1494 aa12.81□□□□□ -0.36
VCAN-210ENST00000513960 ST20-MTHFSA0A0A6YYL1 179 aa12.81□□□□□ -0.36
VCAN-210ENST00000513960 RGL3Q3MIN7 710 aa12.81□□□□□ -0.36
VCAN-210ENST00000513960 KDM5DQ9BY66 1539 aa12.8□□□□□ -0.36
VCAN-210ENST00000513960 ARHGEF12Q9NZN5 1544 aa12.8□□□□□ -0.36
VCAN-210ENST00000513960 SLC4A3P48751 1232 aa12.8□□□□□ -0.36
VCAN-210ENST00000513960 CCDC144AA2RUR9 1427 aa12.8□□□□□ -0.36
VCAN-210ENST00000513960 POLR1AO95602 1720 aaPredicted RBP12.8□□□□□ -0.36
VCAN-210ENST00000513960 ARXQ96QS3 562 aa12.79□□□□□ -0.36
VCAN-210ENST00000513960 BRPF3Q9ULD4 1205 aa12.79□□□□□ -0.36
VCAN-210ENST00000513960 SAMD9LQ8IVG5 1584 aa12.79□□□□□ -0.36
VCAN-210ENST00000513960 PREX2Q70Z35 1606 aa12.78□□□□□ -0.36
VCAN-210ENST00000513960 EXOC6Q8TAG9 804 aa12.78□□□□□ -0.36
VCAN-210ENST00000513960 DHX29Q7Z478 1369 aaKnown RBP12.78□□□□□ -0.36
VCAN-210ENST00000513960 KDM5CP41229 1560 aa12.78□□□□□ -0.36
VCAN-210ENST00000513960 CHD1O14646 1710 aa12.77□□□□□ -0.36
VCAN-210ENST00000513960 SYCP2Q9BX26 1530 aa12.77□□□□□ -0.36
VCAN-210ENST00000513960 FAM135AQ9P2D6 1515 aa12.77□□□□□ -0.36
VCAN-210ENST00000513960 PPM1GO15355 546 aaPredicted RBP12.77□□□□□ -0.37
VCAN-210ENST00000513960 CDC42BPBQ9Y5S2 1711 aa12.77□□□□□ -0.37
VCAN-210ENST00000513960 PLEKHH2Q8IVE3 1493 aa12.77□□□□□ -0.37
VCAN-210ENST00000513960 PDE4AP27815 886 aa12.76□□□□□ -0.37
VCAN-210ENST00000513960 EFCAB2Q5VUJ9 269 aa12.76□□□□□ -0.37
VCAN-210ENST00000513960 BCORL1Q5H9F3 1711 aa12.76□□□□□ -0.37
VCAN-210ENST00000513960 SKAP1Q86WV1 359 aa12.75□□□□□ -0.37
VCAN-210ENST00000513960 ABCC2Q92887 1545 aa12.74□□□□□ -0.37
VCAN-210ENST00000513960 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.74□□□□□ -0.37
VCAN-210ENST00000513960 TTC37Q6PGP7 1564 aa12.73□□□□□ -0.37
VCAN-210ENST00000513960 RALBP1Q15311 655 aa12.72□□□□□ -0.37
VCAN-210ENST00000513960 PLIN1O60240 522 aa12.71□□□□□ -0.37
VCAN-210ENST00000513960 SHROOM2Q13796 1616 aa12.71□□□□□ -0.38
VCAN-210ENST00000513960 TCERG1O14776 1098 aaKnown RBP12.71□□□□□ -0.38
VCAN-210ENST00000513960 NBPF1Q3BBV0 1214 aa12.7□□□□□ -0.38
VCAN-210ENST00000513960 PNISRQ8TF01 805 aaKnown RBP12.7□□□□□ -0.38
VCAN-210ENST00000513960 ERCC6L2Q5T890 1561 aa12.7□□□□□ -0.38
VCAN-210ENST00000513960 MYBBP1AQ9BQG0 1328 aaKnown RBP12.7□□□□□ -0.38
VCAN-210ENST00000513960 MAST1Q9Y2H9 1570 aa12.7□□□□□ -0.38
VCAN-210ENST00000513960 PRAG1Q86YV5 1406 aa12.7□□□□□ -0.38
VCAN-210ENST00000513960 RCAN3Q9UKA8 241 aa12.69□□□□□ -0.38
VCAN-210ENST00000513960 KTN1Q86UP2 1357 aaKnown RBP12.69□□□□□ -0.38
VCAN-210ENST00000513960 MYO5CQ9NQX4 1742 aa12.69□□□□□ -0.38
VCAN-210ENST00000513960 PLCH2O75038 1416 aa12.69□□□□□ -0.38
VCAN-210ENST00000513960 DUOX2Q9NRD8 1548 aa12.68□□□□□ -0.38
VCAN-210ENST00000513960 DDRGK1Q96HY6 314 aa12.68□□□□□ -0.38
VCAN-210ENST00000513960 SPAG9O60271 1321 aaKnown RBP12.68□□□□□ -0.38
VCAN-210ENST00000513960 RRP1P56182 461 aaKnown RBP12.68□□□□□ -0.38
VCAN-210ENST00000513960 GSE1Q14687 1217 aa12.68□□□□□ -0.38
VCAN-210ENST00000513960 SMG6Q86US8 1419 aaKnown RBP12.67□□□□□ -0.38
VCAN-210ENST00000513960 BRD4O60885 1362 aaPredicted RBP12.67□□□□□ -0.38
VCAN-210ENST00000513960 RGS3P49796 1198 aa12.67□□□□□ -0.38
VCAN-210ENST00000513960 UNC13BO14795 1591 aa12.67□□□□□ -0.38
VCAN-210ENST00000513960 PLA2R1Q13018 1463 aa12.66□□□□□ -0.38
VCAN-210ENST00000513960 ERBINQ96RT1 1412 aa12.66□□□□□ -0.38
VCAN-210ENST00000513960 PLXNC1O60486 1568 aa12.66□□□□□ -0.38
VCAN-210ENST00000513960 USP35Q9P2H5 1018 aa12.66□□□□□ -0.38
VCAN-210ENST00000513960 A2MP01023 1474 aa12.65□□□□□ -0.38
VCAN-210ENST00000513960 TMF1P82094 1093 aa12.65□□□□□ -0.38
VCAN-210ENST00000513960 NLRP13Q86W25 1043 aa12.65□□□□□ -0.38
VCAN-210ENST00000513960 FRAT1Q92837 279 aaPredicted RBP12.65□□□□□ -0.38
VCAN-210ENST00000513960 NFKBIBQ15653 356 aa12.64□□□□□ -0.39
VCAN-210ENST00000513960 AFAP1Q8N556 730 aa12.64□□□□□ -0.39
VCAN-210ENST00000513960 GPRASP1Q5JY77 1395 aa12.63□□□□□ -0.39
VCAN-210ENST00000513960 IQGAP3Q86VI3 1631 aa12.63□□□□□ -0.39
VCAN-210ENST00000513960 TRAPPC8Q9Y2L5 1435 aa12.63□□□□□ -0.39
VCAN-210ENST00000513960 UHRF1BP1LA0JNW5 1464 aa12.62□□□□□ -0.39
VCAN-210ENST00000513960 TRPM1Q7Z4N2 1603 aa12.62□□□□□ -0.39
VCAN-210ENST00000513960 BACH2Q9BYV9 841 aa12.62□□□□□ -0.39
VCAN-210ENST00000513960 ZCCHC11Q5TAX3 1644 aaKnown RBP12.62□□□□□ -0.39
VCAN-210ENST00000513960 CC2D1BQ5T0F9 858 aaKnown RBP12.62□□□□□ -0.39
VCAN-210ENST00000513960 PANK3Q9H999 370 aa12.61□□□□□ -0.39
VCAN-210ENST00000513960 CDCA7LQ96GN5 454 aa12.6□□□□□ -0.39
VCAN-210ENST00000513960 TESK2Q96S53 571 aa12.6□□□□□ -0.39
VCAN-210ENST00000513960 CRBNQ96SW2 442 aa12.6□□□□□ -0.39
VCAN-210ENST00000513960 WASHC2CQ9Y4E1 1318 aa12.6□□□□□ -0.39
VCAN-210ENST00000513960 ATP10AO60312 1499 aa12.6□□□□□ -0.39
VCAN-210ENST00000513960 ABCC1P33527 1531 aa12.6□□□□□ -0.39
VCAN-210ENST00000513960 LRPPRCP42704 1394 aaKnown RBP12.6□□□□□ -0.39
VCAN-210ENST00000513960 EIF2AK4Q9P2K8 1649 aaKnown RBP12.59□□□□□ -0.39
VCAN-210ENST00000513960 KANK1Q14678 1352 aa12.59□□□□□ -0.39
VCAN-210ENST00000513960 DISP3Q9P2K9 1392 aa12.59□□□□□ -0.39
VCAN-210ENST00000513960 PER1O15534 1290 aaPredicted RBP12.59□□□□□ -0.39
VCAN-210ENST00000513960 PARD3Q8TEW0 1356 aa12.58□□□□□ -0.39
VCAN-210ENST00000513960 MAGI2Q86UL8 1455 aa12.58□□□□□ -0.4
VCAN-210ENST00000513960 CLASP1Q7Z460 1538 aa12.58□□□□□ -0.4
VCAN-210ENST00000513960 COL17A1Q9UMD9 1497 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms