RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 RWDD1Q9H446 243 aaPredicted RBP14.2□□□□□ -0.14
TCOF1-211ENST00000513346 PRXQ9BXM0 1461 aa14.2□□□□□ -0.14
TCOF1-211ENST00000513346 CRBNQ96SW2 442 aa14.19□□□□□ -0.14
TCOF1-211ENST00000513346 ERICH3Q5RHP9 1530 aa14.19□□□□□ -0.14
TCOF1-211ENST00000513346 DDX11L8A8MPP1 907 aa14.19□□□□□ -0.14
TCOF1-211ENST00000513346 MORC1Q86VD1 984 aa14.19□□□□□ -0.14
TCOF1-211ENST00000513346 FGD6Q6ZV73 1430 aa14.19□□□□□ -0.14
TCOF1-211ENST00000513346 LRRC9Q6ZRR7 1453 aa14.19□□□□□ -0.14
TCOF1-211ENST00000513346 PLIN1O60240 522 aa14.18□□□□□ -0.14
TCOF1-211ENST00000513346 PMFBP1Q8TBY8 1022 aa14.18□□□□□ -0.14
TCOF1-211ENST00000513346 ZNF644Q9H582 1327 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-211ENST00000513346 CHMP4BQ9H444 224 aaKnown RBP14.18□□□□□ -0.14
TCOF1-211ENST00000513346 MYBBP1AQ9BQG0 1328 aaKnown RBP14.18□□□□□ -0.14
TCOF1-211ENST00000513346 GOLGA2Q08379 1002 aa14.18□□□□□ -0.14
TCOF1-211ENST00000513346 CUX1P39880 1505 aa14.17□□□□□ -0.14
TCOF1-211ENST00000513346 KIF15Q9NS87 1388 aa14.17□□□□□ -0.14
TCOF1-211ENST00000513346 TOP2BQ02880 1626 aa14.16□□□□□ -0.14
TCOF1-211ENST00000513346 KIAA2012Q0VF49 1180 aa14.16□□□□□ -0.14
TCOF1-211ENST00000513346 NUTM2DQ5VT03 806 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-211ENST00000513346 PRG4Q92954 1404 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-211ENST00000513346 CNTLNQ9NXG0 1405 aa14.16□□□□□ -0.14
TCOF1-211ENST00000513346 MYOM3Q5VTT5 1437 aa14.15□□□□□ -0.14
TCOF1-211ENST00000513346 UBE2Q2Q8WVN8 375 aa14.15□□□□□ -0.14
TCOF1-211ENST00000513346 MFAP1P55081 439 aaKnown RBP14.15□□□□□ -0.14
TCOF1-211ENST00000513346 POLA1P09884 1462 aaPredicted RBP14.15□□□□□ -0.15
TCOF1-211ENST00000513346 BACH2Q9BYV9 841 aa14.14□□□□□ -0.15
TCOF1-211ENST00000513346 CASKIN1Q8WXD9 1431 aa14.14□□□□□ -0.15
TCOF1-211ENST00000513346 TPRNQ4KMQ1 711 aa14.13□□□□□ -0.15
TCOF1-211ENST00000513346 HDGFL2Q7Z4V5 671 aaPredicted RBP14.13□□□□□ -0.15
TCOF1-211ENST00000513346 DNMBPQ6XZF7 1577 aa14.13□□□□□ -0.15
TCOF1-211ENST00000513346 CCDC7Q96M83 1385 aa14.13□□□□□ -0.15
TCOF1-211ENST00000513346 WASHC2AQ641Q2 1341 aa14.13□□□□□ -0.15
TCOF1-211ENST00000513346 ST20-MTHFSA0A0A6YYL1 179 aa14.13□□□□□ -0.15
TCOF1-211ENST00000513346 CALD1Q05682 793 aaKnown RBP14.12□□□□□ -0.15
TCOF1-211ENST00000513346 CFAP44Q96MT7 982 aa14.12□□□□□ -0.15
TCOF1-211ENST00000513346 FRAT2O75474 233 aaPredicted RBP14.12□□□□□ -0.15
TCOF1-211ENST00000513346 SKOR2Q2VWA4 1001 aaPredicted RBP14.12□□□□□ -0.15
TCOF1-211ENST00000513346 SNAPC4Q5SXM2 1469 aa14.1□□□□□ -0.15
TCOF1-211ENST00000513346 RRBP1Q9P2E9 1410 aaKnown RBP14.1□□□□□ -0.15
TCOF1-211ENST00000513346 NCOA2Q15596 1464 aa14.09□□□□□ -0.15
TCOF1-211ENST00000513346 CHMP5Q9NZZ3 219 aa14.08□□□□□ -0.15
TCOF1-211ENST00000513346 AMER1Q5JTC6 1135 aaPredicted RBP14.08□□□□□ -0.16
TCOF1-211ENST00000513346 CCDC144AA2RUR9 1427 aa14.08□□□□□ -0.16
TCOF1-211ENST00000513346 MRE11P49959 708 aa14.08□□□□□ -0.16
TCOF1-211ENST00000513346 SYNJ2O15056 1496 aa14.08□□□□□ -0.16
TCOF1-211ENST00000513346 UNC13AQ9UPW8 1703 aa14.07□□□□□ -0.16
TCOF1-211ENST00000513346 AKNAQ7Z591 1439 aa14.07□□□□□ -0.16
TCOF1-211ENST00000513346 KIF7Q2M1P5 1343 aa14.06□□□□□ -0.16
TCOF1-211ENST00000513346 UACAQ9BZF9 1416 aa14.06□□□□□ -0.16
TCOF1-211ENST00000513346 FAM13BQ9NYF5 915 aa14.06□□□□□ -0.16
TCOF1-211ENST00000513346 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.06□□□□□ -0.16
TCOF1-211ENST00000513346 CENPJQ9HC77 1338 aaPredicted RBP14.06□□□□□ -0.16
TCOF1-211ENST00000513346 SYAP1Q96A49 352 aaPredicted RBP14.06□□□□□ -0.16
TCOF1-211ENST00000513346 SMG6Q86US8 1419 aaKnown RBP14.05□□□□□ -0.16
TCOF1-211ENST00000513346 RRP9O43818 475 aaKnown RBP14.05□□□□□ -0.16
TCOF1-211ENST00000513346 CGNL1Q0VF96 1302 aa14.05□□□□□ -0.16
TCOF1-211ENST00000513346 TPM2P07951 284 aa14.05□□□□□ -0.16
TCOF1-211ENST00000513346 DDX49Q9Y6V7 483 aaKnown RBP14.05□□□□□ -0.16
TCOF1-211ENST00000513346 FYCO1Q9BQS8 1478 aa14.05□□□□□ -0.16
TCOF1-211ENST00000513346 EIF3AQ14152 1382 aaKnown RBP14.04□□□□□ -0.16
TCOF1-211ENST00000513346 U2AF1L5P0DN76 240 aaPredicted RBP14.04□□□□□ -0.16
TCOF1-211ENST00000513346 U2AF1Q01081 240 aaKnown RBP eCLIP14.04□□□□□ -0.16
TCOF1-211ENST00000513346 MAP7D2Q96T17 732 aa14.04□□□□□ -0.16
TCOF1-211ENST00000513346 ZRSR1Q15695 479 aaKnown RBP14.04□□□□□ -0.16
TCOF1-211ENST00000513346 IPO8O15397 1037 aaKnown RBP14.03□□□□□ -0.16
TCOF1-211ENST00000513346 AFAP1Q8N556 730 aa14.03□□□□□ -0.16
TCOF1-211ENST00000513346 RTF1Q92541 710 aaKnown RBP14.03□□□□□ -0.16
TCOF1-211ENST00000513346 USP47Q96K76 1375 aa14.03□□□□□ -0.16
TCOF1-211ENST00000513346 GOLGA6L6A8MZA4 724 aa14.02□□□□□ -0.16
TCOF1-211ENST00000513346 FOXD4L1Q9NU39 408 aa14.02□□□□□ -0.16
TCOF1-211ENST00000513346 ZNF608Q9ULD9 1512 aaPredicted RBP14.02□□□□□ -0.17
TCOF1-211ENST00000513346 WDR97A6NE52 1622 aa14.02□□□□□ -0.17
TCOF1-211ENST00000513346 NPHP1O15259 732 aa14.02□□□□□ -0.17
TCOF1-211ENST00000513346 OS9Q13438 667 aaPredicted RBP14.01□□□□□ -0.17
TCOF1-211ENST00000513346 NRDCO43847 1150 aa14.01□□□□□ -0.17
TCOF1-211ENST00000513346 ITPRIPQ8IWB1 547 aa14.01□□□□□ -0.17
TCOF1-211ENST00000513346 TERF2IPQ9NYB0 399 aa14.01□□□□□ -0.17
TCOF1-211ENST00000513346 TRAK1Q9UPV9 953 aa14.01□□□□□ -0.17
TCOF1-211ENST00000513346 NUTM2FA1L443 756 aa14.01□□□□□ -0.17
TCOF1-211ENST00000513346 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
TCOF1-211ENST00000513346 PRDM2Q13029 1718 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 DRC7Q8IY82 874 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 CLUAP1Q96AJ1 413 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 MCCP23508 829 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 CCDC184Q52MB2 194 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 MAGI1Q96QZ7 1491 aaPredicted RBP14□□□□□ -0.17
TCOF1-211ENST00000513346 CSPP1Q1MSJ5 1256 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 PANK3Q9H999 370 aa14□□□□□ -0.17
TCOF1-211ENST00000513346 RAPGEF3O95398 923 aa13.99□□□□□ -0.17
TCOF1-211ENST00000513346 MTERF4Q7Z6M4 381 aaKnown RBP13.99□□□□□ -0.17
TCOF1-211ENST00000513346 CCDC146Q8IYE0 955 aa13.99□□□□□ -0.17
TCOF1-211ENST00000513346 KIAA0586Q9BVV6 1533 aa13.99□□□□□ -0.17
TCOF1-211ENST00000513346 ABCA10Q8WWZ4 1543 aa13.99□□□□□ -0.17
TCOF1-211ENST00000513346 GOLGA6L4A6NEF3 574 aa13.98□□□□□ -0.17
TCOF1-211ENST00000513346 ANKRD50Q9ULJ7 1429 aa13.98□□□□□ -0.17
TCOF1-211ENST00000513346 TRAK2O60296 914 aa13.98□□□□□ -0.17
TCOF1-211ENST00000513346 EFCAB5A4FU69 1503 aa13.98□□□□□ -0.17
TCOF1-211ENST00000513346 PODXL2Q9NZ53 605 aa13.97□□□□□ -0.17
TCOF1-211ENST00000513346 E9PSI1 815 aa13.97□□□□□ -0.17
TCOF1-211ENST00000513346 CSB-PGBD3P0DP91 1061 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms