RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SETD5Q9C0A6 1442 aa10.84□□□□□ -0.67
LIMCH1-218ENST00000513024 MCCP23508 829 aa10.84□□□□□ -0.67
LIMCH1-218ENST00000513024 SLC4A3P48751 1232 aa10.83□□□□□ -0.68
LIMCH1-218ENST00000513024 MFAP1P55081 439 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-218ENST00000513024 TOP2BQ02880 1626 aa10.83□□□□□ -0.68
LIMCH1-218ENST00000513024 TPM2P07951 284 aa10.83□□□□□ -0.68
LIMCH1-218ENST00000513024 TMF1P82094 1093 aa10.82□□□□□ -0.68
LIMCH1-218ENST00000513024 UBE2Q2Q8WVN8 375 aa10.82□□□□□ -0.68
LIMCH1-218ENST00000513024 DDX11L8A8MPP1 907 aa10.82□□□□□ -0.68
LIMCH1-218ENST00000513024 PHF14O94880 888 aa10.82□□□□□ -0.68
LIMCH1-218ENST00000513024 FOXD4L1Q9NU39 408 aa10.82□□□□□ -0.68
LIMCH1-218ENST00000513024 TPM3P06753 285 aa10.82□□□□□ -0.68
LIMCH1-218ENST00000513024 RRP9O43818 475 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-218ENST00000513024 CCDC191Q8NCU4 936 aa10.81□□□□□ -0.68
LIMCH1-218ENST00000513024 G3V3G9 751 aa10.81□□□□□ -0.68
LIMCH1-218ENST00000513024 DCAF8Q5TAQ9 597 aa10.81□□□□□ -0.68
LIMCH1-218ENST00000513024 NCAPD3P42695 1498 aa10.81□□□□□ -0.68
LIMCH1-218ENST00000513024 CARMIL1Q5VZK9 1371 aa10.81□□□□□ -0.68
LIMCH1-218ENST00000513024 NEFHP12036 1026 aa10.8□□□□□ -0.68
LIMCH1-218ENST00000513024 CUX2O14529 1486 aa10.8□□□□□ -0.68
LIMCH1-218ENST00000513024 RWDD1Q9H446 243 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-218ENST00000513024 ARHGAP35Q9NRY4 1499 aa10.8□□□□□ -0.68
LIMCH1-218ENST00000513024 H0YHG0 523 aa10.8□□□□□ -0.68
LIMCH1-218ENST00000513024 FANCIQ9NVI1 1328 aa10.8□□□□□ -0.68
LIMCH1-218ENST00000513024 TAF3Q5VWG9 929 aa10.79□□□□□ -0.68
LIMCH1-218ENST00000513024 HMMRO75330 724 aa10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 CCAR2Q8N163 923 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 GNL2Q13823 731 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 HSP90AB3PQ58FF7 597 aa10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 ITPRIPQ8IWB1 547 aa10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 WASHC2AQ641Q2 1341 aa10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 MORC1Q86VD1 984 aa10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 SKOR2Q2VWA4 1001 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-218ENST00000513024 FAM69CQ0P6D2 419 aa10.77□□□□□ -0.68
LIMCH1-218ENST00000513024 CLUAP1Q96AJ1 413 aa10.77□□□□□ -0.68
LIMCH1-218ENST00000513024 IGF1RP08069 1367 aa10.77□□□□□ -0.68
LIMCH1-218ENST00000513024 ARGLU1Q9NWB6 273 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-218ENST00000513024 PAK3O75914 559 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 FHAD1B1AJZ9 1412 aa10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 KIAA1211Q6ZU35 1233 aa10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 SOX12O15370 315 aa10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 PDE4AP27815 886 aa10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 CCDC70Q6NSX1 233 aa10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 FANCD2Q9BXW9 1451 aa10.76□□□□□ -0.69
LIMCH1-218ENST00000513024 IPO8O15397 1037 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-218ENST00000513024 KTN1Q86UP2 1357 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-218ENST00000513024 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
LIMCH1-218ENST00000513024 DEF6Q9H4E7 631 aa10.75□□□□□ -0.69
LIMCH1-218ENST00000513024 HMGXB3Q12766 1538 aa10.75□□□□□ -0.69
LIMCH1-218ENST00000513024 SRPK2P78362 688 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 NOL8Q76FK4 1167 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 ACBD3Q9H3P7 528 aa10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 DIAPH3Q9NSV4 1193 aa10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 HSP90B2PQ58FF3 399 aa10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 ZNF592Q92610 1267 aa10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 R3HCC1Q9Y3T6 440 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 FOXD4L5Q5VV16 416 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 FOXD4L4Q8WXT5 416 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 CUX1P39880 1505 aa10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 PHLDB1Q86UU1 1377 aa10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 DDX49Q9Y6V7 483 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-218ENST00000513024 MSH5O43196 834 aa10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 EVA1CP58658 441 aa10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 SAFB2Q14151 953 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 HDGFL2Q7Z4V5 671 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 U2AF1L5P0DN76 240 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 U2AF1Q01081 240 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 CCDC34Q96HJ3 373 aa10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 USP8P40818 1118 aa10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 PMFBP1Q8TBY8 1022 aa10.73□□□□□ -0.69
LIMCH1-218ENST00000513024 MAPK8IP2Q13387 824 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-218ENST00000513024 AEBP1Q8IUX7 1158 aa10.72□□□□□ -0.69
LIMCH1-218ENST00000513024 HSP90B1P14625 803 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-218ENST00000513024 PLCD4Q9BRC7 762 aa10.72□□□□□ -0.69
LIMCH1-218ENST00000513024 CDR1P51861 262 aa10.71□□□□□ -0.69
LIMCH1-218ENST00000513024 RALBP1Q15311 655 aa10.71□□□□□ -0.69
LIMCH1-218ENST00000513024 NCBP3Q53F19 620 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-218ENST00000513024 IL27Q8NEV9 243 aa10.71□□□□□ -0.69
LIMCH1-218ENST00000513024 WASHC2CQ9Y4E1 1318 aa10.71□□□□□ -0.7
LIMCH1-218ENST00000513024 TSPYL1Q9H0U9 437 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 LRRC9Q6ZRR7 1453 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 PLIN1O60240 522 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 DYDC1Q8WWB3 177 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 CFTRP13569 1480 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 ATF3P18847 181 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 DCTN1Q14203 1278 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 SMC4Q9NTJ3 1288 aa10.7□□□□□ -0.7
LIMCH1-218ENST00000513024 MRC2Q9UBG0 1479 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 BIVM-ERCC5R4GMW8 1640 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 CCDC146Q8IYE0 955 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 EXOC6Q8TAG9 804 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 AK7Q96M32 723 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 GTF2E1P29083 439 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 PKD2Q13563 968 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 LEKR1Q6ZMV7 388 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 DMRT2Q9Y5R5 561 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 ZMYND15Q9H091 742 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 HMGN5P82970 282 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 FAM161AQ3B820 660 aa10.69□□□□□ -0.7
LIMCH1-218ENST00000513024 KIF3AQ9Y496 699 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms