RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 PHLDB1Q86UU1 1377 aa11.94□□□□□ -0.5
USP46-208ENST00000512656 L3MBTL3Q96JM7 780 aaPredicted RBP11.94□□□□□ -0.5
USP46-208ENST00000512656 CABP2Q9NPB3 220 aa11.93□□□□□ -0.5
USP46-208ENST00000512656 RANGAP1P46060 587 aaPredicted RBP11.92□□□□□ -0.5
USP46-208ENST00000512656 RAPGEF6Q8TEU7 1601 aa11.92□□□□□ -0.5
USP46-208ENST00000512656 SLAIN1Q8ND83 568 aa11.91□□□□□ -0.5
USP46-208ENST00000512656 ARAP3Q8WWN8 1544 aa11.91□□□□□ -0.5
USP46-208ENST00000512656 VGFO15240 615 aaPredicted RBP11.9□□□□□ -0.5
USP46-208ENST00000512656 TAOK2Q9UL54 1235 aa11.9□□□□□ -0.5
USP46-208ENST00000512656 FHOD3Q2V2M9 1422 aa11.89□□□□□ -0.51
USP46-208ENST00000512656 PLEKHD1A6NEE1 506 aa11.89□□□□□ -0.51
USP46-208ENST00000512656 RNF25Q96BH1 459 aaPredicted RBP11.89□□□□□ -0.51
USP46-208ENST00000512656 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.89□□□□□ -0.51
USP46-208ENST00000512656 ABCA9Q8IUA7 1624 aa11.89□□□□□ -0.51
USP46-208ENST00000512656 NUP153P49790 1475 aaKnown RBP11.88□□□□□ -0.51
USP46-208ENST00000512656 NEO1Q92859 1461 aa11.88□□□□□ -0.51
USP46-208ENST00000512656 EFCAB5A4FU69 1503 aa11.87□□□□□ -0.51
USP46-208ENST00000512656 KIF21BO75037 1637 aa11.87□□□□□ -0.51
USP46-208ENST00000512656 POTEMA6NI47 508 aa11.86□□□□□ -0.51
USP46-208ENST00000512656 UBTFP17480 764 aaKnown RBP11.85□□□□□ -0.51
USP46-208ENST00000512656 FAM163AQ96GL9 167 aaPredicted RBP11.85□□□□□ -0.51
USP46-208ENST00000512656 POTEGQ6S5H5 508 aa11.84□□□□□ -0.51
USP46-208ENST00000512656 C3orf67Q6ZVT6 689 aa11.84□□□□□ -0.51
USP46-208ENST00000512656 RAPGEF3O95398 923 aa11.83□□□□□ -0.52
USP46-208ENST00000512656 LCE2DQ5TA82 110 aaPredicted RBP11.83□□□□□ -0.52
USP46-208ENST00000512656 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.82□□□□□ -0.52
USP46-208ENST00000512656 ZFP91Q96JP5 570 aaPredicted RBP11.82□□□□□ -0.52
USP46-208ENST00000512656 SOX12O15370 315 aa11.81□□□□□ -0.52
USP46-208ENST00000512656 EFCAB3Q8N7B9 438 aa11.81□□□□□ -0.52
USP46-208ENST00000512656 PCDH10Q9P2E7 1040 aa11.81□□□□□ -0.52
USP46-208ENST00000512656 FMN1Q68DA7 1419 aa11.8□□□□□ -0.52
USP46-208ENST00000512656 SNPHO15079 494 aa11.8□□□□□ -0.52
USP46-208ENST00000512656 DENND4BO75064 1496 aaPredicted RBP11.79□□□□□ -0.52
USP46-208ENST00000512656 ECM2O94769 699 aaPredicted RBP11.79□□□□□ -0.52
USP46-208ENST00000512656 CDK11AQ9UQ88 783 aaPredicted RBP11.79□□□□□ -0.52
USP46-208ENST00000512656 ARID4BQ4LE39 1312 aaPredicted RBP11.79□□□□□ -0.52
USP46-208ENST00000512656 AKNAQ7Z591 1439 aa11.78□□□□□ -0.52
USP46-208ENST00000512656 FANCAO15360 1455 aa11.78□□□□□ -0.52
USP46-208ENST00000512656 G3V3G9 751 aa11.78□□□□□ -0.52
USP46-208ENST00000512656 ATP1B4Q9UN42 357 aaPredicted RBP11.78□□□□□ -0.52
USP46-208ENST00000512656 BOLA1Q9Y3E2 137 aa11.78□□□□□ -0.52
USP46-208ENST00000512656 CFAP74Q9C0B2 1584 aa11.78□□□□□ -0.52
USP46-208ENST00000512656 HECW2Q9P2P5 1572 aa11.78□□□□□ -0.52
USP46-208ENST00000512656 PKD2Q13563 968 aa11.77□□□□□ -0.53
USP46-208ENST00000512656 DPY19L2Q6NUT2 758 aa11.77□□□□□ -0.53
USP46-208ENST00000512656 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP46-208ENST00000512656 CDK13Q14004 1512 aaKnown RBP11.75□□□□□ -0.53
USP46-208ENST00000512656 TMEM121BQ9BXQ6 578 aaPredicted RBP11.74□□□□□ -0.53
USP46-208ENST00000512656 FRMPD1Q5SYB0 1578 aa11.74□□□□□ -0.53
USP46-208ENST00000512656 HECW1Q76N89 1606 aa11.74□□□□□ -0.53
USP46-208ENST00000512656 PLCH2O75038 1416 aa11.73□□□□□ -0.53
USP46-208ENST00000512656 PTPRMP28827 1452 aa11.73□□□□□ -0.53
USP46-208ENST00000512656 TTC37Q6PGP7 1564 aa11.73□□□□□ -0.53
USP46-208ENST00000512656 ARHGAP35Q9NRY4 1499 aa11.73□□□□□ -0.53
USP46-208ENST00000512656 ADAMTSL3P82987 1691 aa11.72□□□□□ -0.53
USP46-208ENST00000512656 ARHGEF40Q8TER5 1519 aa11.72□□□□□ -0.53
USP46-208ENST00000512656 MAGI2Q86UL8 1455 aa11.72□□□□□ -0.53
USP46-208ENST00000512656 POGZQ7Z3K3 1410 aa11.72□□□□□ -0.53
USP46-208ENST00000512656 EFCAB2Q5VUJ9 269 aa11.72□□□□□ -0.53
USP46-208ENST00000512656 ST18O60284 1047 aa11.71□□□□□ -0.53
USP46-208ENST00000512656 BCL11BQ9C0K0 894 aaPredicted RBP11.71□□□□□ -0.53
USP46-208ENST00000512656 ZMYM4Q5VZL5 1548 aa11.7□□□□□ -0.54
USP46-208ENST00000512656 CLIP1P30622 1438 aa11.7□□□□□ -0.54
USP46-208ENST00000512656 SCAPERQ9BY12 1400 aa11.7□□□□□ -0.54
USP46-208ENST00000512656 BCORL1Q5H9F3 1711 aa11.7□□□□□ -0.54
USP46-208ENST00000512656 RICTORQ6R327 1708 aa11.7□□□□□ -0.54
USP46-208ENST00000512656 ZFYVE16Q7Z3T8 1539 aa11.7□□□□□ -0.54
USP46-208ENST00000512656 TROQ12816 1431 aaPredicted RBP11.69□□□□□ -0.54
USP46-208ENST00000512656 NLRP6P59044 892 aa11.67□□□□□ -0.54
USP46-208ENST00000512656 STK24Q9Y6E0 443 aa11.67□□□□□ -0.54
USP46-208ENST00000512656 KIF14Q15058 1648 aa11.67□□□□□ -0.54
USP46-208ENST00000512656 MADDQ8WXG6 1647 aa11.67□□□□□ -0.54
USP46-208ENST00000512656 STK25O00506 426 aa11.66□□□□□ -0.54
USP46-208ENST00000512656 RGL2O15211 777 aa11.66□□□□□ -0.54
USP46-208ENST00000512656 YEATS2Q9ULM3 1422 aa11.66□□□□□ -0.54
USP46-208ENST00000512656 CCDC18Q5T9S5 1454 aa11.65□□□□□ -0.54
USP46-208ENST00000512656 MS4A4AQ96JQ5 239 aa11.65□□□□□ -0.54
USP46-208ENST00000512656 PHF8Q9UPP1 1060 aa11.65□□□□□ -0.54
USP46-208ENST00000512656 CASKIN1Q8WXD9 1431 aa11.65□□□□□ -0.54
USP46-208ENST00000512656 MYO5CQ9NQX4 1742 aa11.65□□□□□ -0.54
USP46-208ENST00000512656 ATP10AO60312 1499 aa11.64□□□□□ -0.55
USP46-208ENST00000512656 ZNF518AQ6AHZ1 1483 aa11.64□□□□□ -0.55
USP46-208ENST00000512656 MICALL2Q8IY33 904 aa11.64□□□□□ -0.55
USP46-208ENST00000512656 ARHGAP5Q13017 1502 aa11.64□□□□□ -0.55
USP46-208ENST00000512656 MLECQ14165 292 aa11.63□□□□□ -0.55
USP46-208ENST00000512656 MYT1LQ9UL68 1186 aa11.63□□□□□ -0.55
USP46-208ENST00000512656 PCF11O94913 1555 aaKnown RBP11.62□□□□□ -0.55
USP46-208ENST00000512656 RIMS1Q86UR5 1692 aaKnown RBP11.62□□□□□ -0.55
USP46-208ENST00000512656 C9orf84Q5VXU9 1444 aa11.62□□□□□ -0.55
USP46-208ENST00000512656 FBXO22Q8NEZ5 403 aa11.62□□□□□ -0.55
USP46-208ENST00000512656 AFAP1Q8N556 730 aa11.61□□□□□ -0.55
USP46-208ENST00000512656 LMTK3Q96Q04 1460 aa11.6□□□□□ -0.55
USP46-208ENST00000512656 FYCO1Q9BQS8 1478 aa11.6□□□□□ -0.55
USP46-208ENST00000512656 FBXO41Q8TF61 875 aa11.58□□□□□ -0.56
USP46-208ENST00000512656 MFRPQ9BY79 579 aa11.58□□□□□ -0.56
USP46-208ENST00000512656 KDM5CP41229 1560 aa11.58□□□□□ -0.56
USP46-208ENST00000512656 ARHGEF12Q9NZN5 1544 aa11.57□□□□□ -0.56
USP46-208ENST00000512656 MLH3Q9UHC1 1453 aa11.57□□□□□ -0.56
USP46-208ENST00000512656 HSPA2P54652 639 aa11.56□□□□□ -0.56
USP46-208ENST00000512656 LRRIQ1Q96JM4 1722 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms