RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 BRD4O60885 1362 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-215ENST00000512632 UHRF1BP1Q6BDS2 1440 aa12.36□□□□□ -0.43
LIMCH1-215ENST00000512632 NLRP13Q86W25 1043 aa12.35□□□□□ -0.43
LIMCH1-215ENST00000512632 PLIN1O60240 522 aa12.35□□□□□ -0.43
LIMCH1-215ENST00000512632 LRPPRCP42704 1394 aaKnown RBP12.35□□□□□ -0.43
LIMCH1-215ENST00000512632 ATP10BO94823 1461 aa12.33□□□□□ -0.44
LIMCH1-215ENST00000512632 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-215ENST00000512632 SKAP1Q86WV1 359 aa12.32□□□□□ -0.44
LIMCH1-215ENST00000512632 MAGI1Q96QZ7 1491 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-215ENST00000512632 POLR1AO95602 1720 aaPredicted RBP12.32□□□□□ -0.44
LIMCH1-215ENST00000512632 ERCC6Q03468 1493 aa12.32□□□□□ -0.44
LIMCH1-215ENST00000512632 PER1O15534 1290 aaPredicted RBP12.31□□□□□ -0.44
LIMCH1-215ENST00000512632 EIF4G3O43432 1585 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-215ENST00000512632 PANK3Q9H999 370 aa12.31□□□□□ -0.44
LIMCH1-215ENST00000512632 MYT1LQ9UL68 1186 aa12.31□□□□□ -0.44
LIMCH1-215ENST00000512632 CEP170Q5SW79 1584 aa12.31□□□□□ -0.44
LIMCH1-215ENST00000512632 ITSN2Q9NZM3 1697 aa12.3□□□□□ -0.44
LIMCH1-215ENST00000512632 SYNJ2O15056 1496 aa12.3□□□□□ -0.44
LIMCH1-215ENST00000512632 CCDC144AA2RUR9 1427 aa12.29□□□□□ -0.44
LIMCH1-215ENST00000512632 RTL5Q5HYW3 569 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-215ENST00000512632 ADGBQ8N7X0 1667 aa12.29□□□□□ -0.44
LIMCH1-215ENST00000512632 PDE4AP27815 886 aa12.29□□□□□ -0.44
LIMCH1-215ENST00000512632 ABCC10Q5T3U5 1492 aa12.29□□□□□ -0.44
LIMCH1-215ENST00000512632 TCERG1O14776 1098 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-215ENST00000512632 PDE3BQ13370 1112 aa12.27□□□□□ -0.44
LIMCH1-215ENST00000512632 ARHGEF12Q9NZN5 1544 aa12.27□□□□□ -0.45
LIMCH1-215ENST00000512632 LAS1LQ9Y4W2 734 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-215ENST00000512632 PARD3Q8TEW0 1356 aa12.27□□□□□ -0.45
LIMCH1-215ENST00000512632 TESK2Q96S53 571 aa12.27□□□□□ -0.45
LIMCH1-215ENST00000512632 CRBNQ96SW2 442 aa12.26□□□□□ -0.45
LIMCH1-215ENST00000512632 DISP3Q9P2K9 1392 aa12.26□□□□□ -0.45
LIMCH1-215ENST00000512632 PTPRGP23470 1445 aa12.26□□□□□ -0.45
LIMCH1-215ENST00000512632 PRAG1Q86YV5 1406 aa12.25□□□□□ -0.45
LIMCH1-215ENST00000512632 TMF1P82094 1093 aa12.25□□□□□ -0.45
LIMCH1-215ENST00000512632 SHANK2Q9UPX8 1470 aa12.24□□□□□ -0.45
LIMCH1-215ENST00000512632 NUP160Q12769 1436 aa12.24□□□□□ -0.45
LIMCH1-215ENST00000512632 ADAMTS8Q9UP79 889 aa12.24□□□□□ -0.45
LIMCH1-215ENST00000512632 CROCC2H7BZ55 1655 aa12.24□□□□□ -0.45
LIMCH1-215ENST00000512632 C20orf194Q5TEA3 1177 aa12.23□□□□□ -0.45
LIMCH1-215ENST00000512632 BACH2Q9BYV9 841 aa12.23□□□□□ -0.45
LIMCH1-215ENST00000512632 CDC42BPAQ5VT25 1732 aa12.23□□□□□ -0.45
LIMCH1-215ENST00000512632 ADCY10Q96PN6 1610 aa12.23□□□□□ -0.45
LIMCH1-215ENST00000512632 RSPH4AQ5TD94 716 aa12.23□□□□□ -0.45
LIMCH1-215ENST00000512632 FAM135AQ9P2D6 1515 aa12.23□□□□□ -0.45
LIMCH1-215ENST00000512632 PLA2R1Q13018 1463 aa12.22□□□□□ -0.45
LIMCH1-215ENST00000512632 CCDC141Q6ZP82 1450 aa12.22□□□□□ -0.45
LIMCH1-215ENST00000512632 ABCA8O94911 1581 aa12.21□□□□□ -0.46
LIMCH1-215ENST00000512632 A2MP01023 1474 aa12.2□□□□□ -0.46
LIMCH1-215ENST00000512632 PLEKHH2Q8IVE3 1493 aa12.2□□□□□ -0.46
LIMCH1-215ENST00000512632 KNSTRNQ9Y448 316 aa12.2□□□□□ -0.46
LIMCH1-215ENST00000512632 KDM5DQ9BY66 1539 aa12.2□□□□□ -0.46
LIMCH1-215ENST00000512632 ERBINQ96RT1 1412 aa12.19□□□□□ -0.46
LIMCH1-215ENST00000512632 NEFMP07197 916 aa12.19□□□□□ -0.46
LIMCH1-215ENST00000512632 WDR43Q15061 677 aaKnown RBP eCLIP12.19□□□□□ -0.46
LIMCH1-215ENST00000512632 WASHC2CQ9Y4E1 1318 aa12.18□□□□□ -0.46
LIMCH1-215ENST00000512632 MS4A1P11836 297 aa12.18□□□□□ -0.46
LIMCH1-215ENST00000512632 GPRASP1Q5JY77 1395 aa12.17□□□□□ -0.46
LIMCH1-215ENST00000512632 PPP2R1AP30153 589 aa12.17□□□□□ -0.46
LIMCH1-215ENST00000512632 SLC4A3P48751 1232 aa12.17□□□□□ -0.46
LIMCH1-215ENST00000512632 COL17A1Q9UMD9 1497 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-215ENST00000512632 CCDC146Q8IYE0 955 aa12.16□□□□□ -0.46
LIMCH1-215ENST00000512632 SAMD9LQ8IVG5 1584 aa12.16□□□□□ -0.46
LIMCH1-215ENST00000512632 SYCP2Q9BX26 1530 aa12.16□□□□□ -0.46
LIMCH1-215ENST00000512632 ARHGAP5Q13017 1502 aa12.15□□□□□ -0.46
LIMCH1-215ENST00000512632 ARHGEF5Q12774 1597 aa12.14□□□□□ -0.47
LIMCH1-215ENST00000512632 PLEKHH1Q9ULM0 1364 aa12.14□□□□□ -0.47
LIMCH1-215ENST00000512632 DUSP27Q5VZP5 1158 aa12.14□□□□□ -0.47
LIMCH1-215ENST00000512632 TRPM1Q7Z4N2 1603 aa12.13□□□□□ -0.47
LIMCH1-215ENST00000512632 GOLGA2Q08379 1002 aa12.13□□□□□ -0.47
LIMCH1-215ENST00000512632 RGS3P49796 1198 aa12.13□□□□□ -0.47
LIMCH1-215ENST00000512632 AMER1Q5JTC6 1135 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-215ENST00000512632 E9PCH4 1651 aa12.13□□□□□ -0.47
LIMCH1-215ENST00000512632 BLMP54132 1417 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-215ENST00000512632 AFAP1Q8N556 730 aa12.12□□□□□ -0.47
LIMCH1-215ENST00000512632 APAF1O14727 1248 aa12.11□□□□□ -0.47
LIMCH1-215ENST00000512632 EFCAB2Q5VUJ9 269 aa12.11□□□□□ -0.47
LIMCH1-215ENST00000512632 MAGI2Q86UL8 1455 aa12.11□□□□□ -0.47
LIMCH1-215ENST00000512632 SPINK5Q9NQ38 1064 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-215ENST00000512632 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-215ENST00000512632 CDC42BPBQ9Y5S2 1711 aa12.09□□□□□ -0.47
LIMCH1-215ENST00000512632 DAXXQ9UER7 740 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-215ENST00000512632 PPM1GO15355 546 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-215ENST00000512632 IL27Q8NEV9 243 aa12.09□□□□□ -0.47
LIMCH1-215ENST00000512632 PRDM15P57071 1507 aaPredicted RBP12.08□□□□□ -0.47
LIMCH1-215ENST00000512632 BCAR3O75815 825 aa12.08□□□□□ -0.48
LIMCH1-215ENST00000512632 CENPQQ7L2Z9 268 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-215ENST00000512632 CDCA8Q53HL2 280 aa12.08□□□□□ -0.48
LIMCH1-215ENST00000512632 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-215ENST00000512632 KDM2BQ8NHM5 1336 aa12.08□□□□□ -0.48
LIMCH1-215ENST00000512632 SLFN5Q08AF3 891 aa12.07□□□□□ -0.48
LIMCH1-215ENST00000512632 DDRGK1Q96HY6 314 aa12.07□□□□□ -0.48
LIMCH1-215ENST00000512632 WDR7Q9Y4E6 1490 aa12.07□□□□□ -0.48
LIMCH1-215ENST00000512632 SPAG9O60271 1321 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-215ENST00000512632 CFAP70Q5T0N1 1121 aa12.07□□□□□ -0.48
LIMCH1-215ENST00000512632 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIMCH1-215ENST00000512632 TTC37Q6PGP7 1564 aa12.06□□□□□ -0.48
LIMCH1-215ENST00000512632 ZMYM4Q5VZL5 1548 aa12.06□□□□□ -0.48
LIMCH1-215ENST00000512632 PREX2Q70Z35 1606 aa12.06□□□□□ -0.48
LIMCH1-215ENST00000512632 ZNF521Q96K83 1311 aa12.06□□□□□ -0.48
LIMCH1-215ENST00000512632 NEUROD2Q15784 382 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms