RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 ZNF326Q5BKZ1 582 aaKnown RBP12.65□□□□□ -0.38
CPNE4-210ENST00000512332 MYO5CQ9NQX4 1742 aa12.65□□□□□ -0.38
CPNE4-210ENST00000512332 FAM9BQ8IZU0 186 aa12.64□□□□□ -0.39
CPNE4-210ENST00000512332 KTN1Q86UP2 1357 aaKnown RBP12.64□□□□□ -0.39
CPNE4-210ENST00000512332 ATP10AO60312 1499 aa12.64□□□□□ -0.39
CPNE4-210ENST00000512332 DCAF11Q8TEB1 546 aa12.64□□□□□ -0.39
CPNE4-210ENST00000512332 CCDC144AA2RUR9 1427 aa12.63□□□□□ -0.39
CPNE4-210ENST00000512332 PLCH2O75038 1416 aa12.63□□□□□ -0.39
CPNE4-210ENST00000512332 DUOX2Q9NRD8 1548 aa12.63□□□□□ -0.39
CPNE4-210ENST00000512332 IQGAP3Q86VI3 1631 aa12.63□□□□□ -0.39
CPNE4-210ENST00000512332 ERBINQ96RT1 1412 aa12.62□□□□□ -0.39
CPNE4-210ENST00000512332 MAGI2Q86UL8 1455 aa12.62□□□□□ -0.39
CPNE4-210ENST00000512332 PRAG1Q86YV5 1406 aa12.62□□□□□ -0.39
CPNE4-210ENST00000512332 ERCC6L2Q5T890 1561 aa12.62□□□□□ -0.39
CPNE4-210ENST00000512332 PLA2R1Q13018 1463 aa12.62□□□□□ -0.39
CPNE4-210ENST00000512332 CLASP1Q7Z460 1538 aa12.61□□□□□ -0.39
CPNE4-210ENST00000512332 GPRASP1Q5JY77 1395 aa12.61□□□□□ -0.39
CPNE4-210ENST00000512332 ST20-MTHFSA0A0A6YYL1 179 aa12.6□□□□□ -0.39
CPNE4-210ENST00000512332 EFCAB2Q5VUJ9 269 aa12.6□□□□□ -0.39
CPNE4-210ENST00000512332 KDM2AQ9Y2K7 1162 aa12.6□□□□□ -0.39
CPNE4-210ENST00000512332 LAMC1P11047 1609 aa12.59□□□□□ -0.39
CPNE4-210ENST00000512332 TRPM1Q7Z4N2 1603 aa12.59□□□□□ -0.39
CPNE4-210ENST00000512332 ARAP3Q8WWN8 1544 aa12.59□□□□□ -0.39
CPNE4-210ENST00000512332 ZCCHC11Q5TAX3 1644 aaKnown RBP12.58□□□□□ -0.4
CPNE4-210ENST00000512332 RALBP1Q15311 655 aa12.58□□□□□ -0.4
CPNE4-210ENST00000512332 E9PCH4 1651 aa12.57□□□□□ -0.4
CPNE4-210ENST00000512332 SMG6Q86US8 1419 aaKnown RBP12.57□□□□□ -0.4
CPNE4-210ENST00000512332 PNISRQ8TF01 805 aaKnown RBP12.57□□□□□ -0.4
CPNE4-210ENST00000512332 PPP4R2Q9NY27 417 aa12.57□□□□□ -0.4
CPNE4-210ENST00000512332 ABCC1P33527 1531 aa12.56□□□□□ -0.4
CPNE4-210ENST00000512332 A2MP01023 1474 aa12.56□□□□□ -0.4
CPNE4-210ENST00000512332 RTEL1-TNFRSF6BF6WH68 1400 aa12.56□□□□□ -0.4
CPNE4-210ENST00000512332 BRD4O60885 1362 aaPredicted RBP12.56□□□□□ -0.4
CPNE4-210ENST00000512332 POLR3GLQ9BT43 218 aa12.55□□□□□ -0.4
CPNE4-210ENST00000512332 EIF2AK4Q9P2K8 1649 aaKnown RBP12.55□□□□□ -0.4
CPNE4-210ENST00000512332 LRPPRCP42704 1394 aaKnown RBP12.54□□□□□ -0.4
CPNE4-210ENST00000512332 MYBBP1AQ9BQG0 1328 aaKnown RBP12.54□□□□□ -0.4
CPNE4-210ENST00000512332 WASHC2CQ9Y4E1 1318 aa12.54□□□□□ -0.4
CPNE4-210ENST00000512332 PRDM15P57071 1507 aaPredicted RBP12.54□□□□□ -0.4
CPNE4-210ENST00000512332 STAC3Q96MF2 364 aa12.53□□□□□ -0.4
CPNE4-210ENST00000512332 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.53□□□□□ -0.4
CPNE4-210ENST00000512332 RBM19Q9Y4C8 960 aaKnown RBP12.53□□□□□ -0.4
CPNE4-210ENST00000512332 TMC1Q8TDI8 760 aa12.53□□□□□ -0.4
CPNE4-210ENST00000512332 RNF123Q5XPI4 1314 aa12.52□□□□□ -0.4
CPNE4-210ENST00000512332 TRAPPC8Q9Y2L5 1435 aa12.52□□□□□ -0.41
CPNE4-210ENST00000512332 NUDCQ9Y266 331 aa12.52□□□□□ -0.41
CPNE4-210ENST00000512332 NBPF1Q3BBV0 1214 aa12.51□□□□□ -0.41
CPNE4-210ENST00000512332 RGL3Q3MIN7 710 aa12.51□□□□□ -0.41
CPNE4-210ENST00000512332 PER1O15534 1290 aaPredicted RBP12.5□□□□□ -0.41
CPNE4-210ENST00000512332 TESK2Q96S53 571 aa12.5□□□□□ -0.41
CPNE4-210ENST00000512332 PARD3Q8TEW0 1356 aa12.5□□□□□ -0.41
CPNE4-210ENST00000512332 COL17A1Q9UMD9 1497 aaPredicted RBP12.5□□□□□ -0.41
CPNE4-210ENST00000512332 IRX6P78412 446 aaPredicted RBP12.5□□□□□ -0.41
CPNE4-210ENST00000512332 SPAG9O60271 1321 aaKnown RBP12.49□□□□□ -0.41
CPNE4-210ENST00000512332 INSRP06213 1382 aa12.48□□□□□ -0.41
CPNE4-210ENST00000512332 NLRP13Q86W25 1043 aa12.48□□□□□ -0.41
CPNE4-210ENST00000512332 ZFYVE16Q7Z3T8 1539 aa12.48□□□□□ -0.41
CPNE4-210ENST00000512332 PTPRTO14522 1441 aa12.48□□□□□ -0.41
CPNE4-210ENST00000512332 DEPDC5O75140 1603 aa12.47□□□□□ -0.41
CPNE4-210ENST00000512332 RNF17Q9BXT8 1623 aaKnown RBP12.47□□□□□ -0.41
CPNE4-210ENST00000512332 WDR7Q9Y4E6 1490 aa12.47□□□□□ -0.41
CPNE4-210ENST00000512332 TRPM2O94759 1503 aa12.47□□□□□ -0.41
CPNE4-210ENST00000512332 ZMYM4Q5VZL5 1548 aa12.46□□□□□ -0.41
CPNE4-210ENST00000512332 TMF1P82094 1093 aa12.45□□□□□ -0.42
CPNE4-210ENST00000512332 NEURL4Q96JN8 1562 aa12.45□□□□□ -0.42
CPNE4-210ENST00000512332 ABCA9Q8IUA7 1624 aa12.45□□□□□ -0.42
CPNE4-210ENST00000512332 VWDEQ8N2E2 1590 aa12.44□□□□□ -0.42
CPNE4-210ENST00000512332 AFAP1Q8N556 730 aa12.44□□□□□ -0.42
CPNE4-210ENST00000512332 DISP3Q9P2K9 1392 aa12.44□□□□□ -0.42
CPNE4-210ENST00000512332 SCAPERQ9BY12 1400 aa12.44□□□□□ -0.42
CPNE4-210ENST00000512332 ANP32EQ9BTT0 268 aa12.43□□□□□ -0.42
CPNE4-210ENST00000512332 INO80Q9ULG1 1556 aaPredicted RBP12.43□□□□□ -0.42
CPNE4-210ENST00000512332 TET3O43151 1660 aa12.43□□□□□ -0.42
CPNE4-210ENST00000512332 PDE3BQ13370 1112 aa12.43□□□□□ -0.42
CPNE4-210ENST00000512332 CNGB1Q14028 1251 aaPredicted RBP12.43□□□□□ -0.42
CPNE4-210ENST00000512332 FANCAO15360 1455 aa12.43□□□□□ -0.42
CPNE4-210ENST00000512332 MADDQ8WXG6 1647 aa12.43□□□□□ -0.42
CPNE4-210ENST00000512332 FANCIQ9NVI1 1328 aa12.42□□□□□ -0.42
CPNE4-210ENST00000512332 ATP7AQ04656 1500 aa12.42□□□□□ -0.42
CPNE4-210ENST00000512332 CEP152O94986 1710 aa12.42□□□□□ -0.42
CPNE4-210ENST00000512332 SPHKAPQ2M3C7 1700 aa12.42□□□□□ -0.42
CPNE4-210ENST00000512332 KANK1Q14678 1352 aa12.42□□□□□ -0.42
CPNE4-210ENST00000512332 PANK3Q9H999 370 aa12.41□□□□□ -0.42
CPNE4-210ENST00000512332 IQGAP1P46940 1657 aa12.4□□□□□ -0.42
CPNE4-210ENST00000512332 CDCA8Q53HL2 280 aa12.39□□□□□ -0.43
CPNE4-210ENST00000512332 B4GALNT3Q6L9W6 998 aa12.39□□□□□ -0.43
CPNE4-210ENST00000512332 SCAF11Q99590 1463 aaKnown RBP12.39□□□□□ -0.43
CPNE4-210ENST00000512332 CLTCL1P53675 1640 aa12.39□□□□□ -0.43
CPNE4-210ENST00000512332 KIAA1210Q9ULL0 1709 aa12.38□□□□□ -0.43
CPNE4-210ENST00000512332 ADGRL1O94910 1474 aa12.38□□□□□ -0.43
CPNE4-210ENST00000512332 SLC24A1O60721 1099 aa12.38□□□□□ -0.43
CPNE4-210ENST00000512332 BLMP54132 1417 aaPredicted RBP12.37□□□□□ -0.43
CPNE4-210ENST00000512332 ASXL2Q76L83 1435 aa12.36□□□□□ -0.43
CPNE4-210ENST00000512332 MROH1Q8NDA8 1641 aa12.35□□□□□ -0.43
CPNE4-210ENST00000512332 KIF3BO15066 747 aa12.35□□□□□ -0.43
CPNE4-210ENST00000512332 EIF3AQ14152 1382 aaKnown RBP12.35□□□□□ -0.43
CPNE4-210ENST00000512332 NPC1L1Q9UHC9 1359 aa12.35□□□□□ -0.43
CPNE4-210ENST00000512332 MYOM2P54296 1465 aa12.35□□□□□ -0.43
CPNE4-210ENST00000512332 SYNMO15061 1565 aa12.34□□□□□ -0.43
CPNE4-210ENST00000512332 LMTK2Q8IWU2 1503 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms