RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 EPAS1Q99814 870 aa9.05□□□□□ -0.96
HMGB1P29-201ENST00000505659 SEMA3EO15041 775 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 COL9A1P20849 921 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 PTPREP23469 700 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 TSR1Q2NL82 804 aaKnown RBP9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 FBXW7Q969H0 707 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 OSBPP22059 807 aa9.03□□□□□ -0.96
HMGB1P29-201ENST00000505659 EN1Q05925 392 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P29-201ENST00000505659 MAP3K7O43318 606 aa9.02□□□□□ -0.97
HMGB1P29-201ENST00000505659 ADGRD1Q6QNK2 874 aa9.02□□□□□ -0.97
HMGB1P29-201ENST00000505659 MMRN1Q13201 1228 aa9.01□□□□□ -0.97
HMGB1P29-201ENST00000505659 C6orf132Q5T0Z8 1188 aa9.01□□□□□ -0.97
HMGB1P29-201ENST00000505659 KCNH8Q96L42 1107 aa9.01□□□□□ -0.97
HMGB1P29-201ENST00000505659 ZBED2Q9BTP6 218 aa9□□□□□ -0.97
HMGB1P29-201ENST00000505659 CDHR5Q9HBB8 845 aa9□□□□□ -0.97
HMGB1P29-201ENST00000505659 PPP1R3GB7ZBB8 358 aa8.99□□□□□ -0.97
HMGB1P29-201ENST00000505659 PROX2Q3B8N5 592 aa8.99□□□□□ -0.97
HMGB1P29-201ENST00000505659 VPS9D1Q9Y2B5 631 aa8.99□□□□□ -0.97
HMGB1P29-201ENST00000505659 TK2O00142 265 aa8.97□□□□□ -0.97
HMGB1P29-201ENST00000505659 HRO43593 1189 aa8.96□□□□□ -0.98
HMGB1P29-201ENST00000505659 TESPA1A2RU30 521 aaPredicted RBP8.95□□□□□ -0.98
HMGB1P29-201ENST00000505659 MYT1LQ9UL68 1186 aa8.95□□□□□ -0.98
HMGB1P29-201ENST00000505659 SLC4A5Q9BY07 1137 aa8.94□□□□□ -0.98
HMGB1P29-201ENST00000505659 RNF166Q96A37 237 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P29-201ENST00000505659 NPDC1Q9NQX5 325 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P29-201ENST00000505659 FAM198AQ9UFP1 575 aa8.91□□□□□ -0.98
HMGB1P29-201ENST00000505659 BHMG1C9JSJ3 638 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P29-201ENST00000505659 RBM26Q5T8P6 1007 aaKnown RBP8.9□□□□□ -0.98
HMGB1P29-201ENST00000505659 TSKSQ9UJT2 592 aa8.9□□□□□ -0.98
HMGB1P29-201ENST00000505659 TRIM6-TRIM34B2RNG4 842 aa8.89□□□□□ -0.99
HMGB1P29-201ENST00000505659 KIAA1468Q9P260 1216 aa8.89□□□□□ -0.99
HMGB1P29-201ENST00000505659 NUTM2FA1L443 756 aa8.88□□□□□ -0.99
HMGB1P29-201ENST00000505659 C3orf80F5H4A9 247 aa8.88□□□□□ -0.99
HMGB1P29-201ENST00000505659 CDCA7LQ96GN5 454 aa8.88□□□□□ -0.99
HMGB1P29-201ENST00000505659 SLC24A1O60721 1099 aa8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 PRSS12P56730 875 aa8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 SEPT9Q9UHD8 586 aaPredicted RBP8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 RABGEF1Q9UJ41 708 aa8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 SMAPO00193 183 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 PTGDRQ13258 359 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 PADI6Q6TGC4 694 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 MRPL50Q8N5N7 158 aaKnown RBP8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 KCTD12Q96CX2 325 aaKnown RBP8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 STAC3Q96MF2 364 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 CERKQ8TCT0 537 aa8.84□□□□□ -0.99
HMGB1P29-201ENST00000505659 NBPF3Q9H094 633 aa8.84□□□□□ -0.99
HMGB1P29-201ENST00000505659 ONECUT3O60422 494 aaPredicted RBP8.82□□□□□ -1
HMGB1P29-201ENST00000505659 SMYD5Q6GMV2 418 aa8.82□□□□□ -1
HMGB1P29-201ENST00000505659 GPR37O15354 613 aa8.81□□□□□ -1
HMGB1P29-201ENST00000505659 PACS2Q86VP3 889 aa8.81□□□□□ -1
HMGB1P29-201ENST00000505659 TTC13Q8NBP0 860 aa8.81□□□□□ -1
HMGB1P29-201ENST00000505659 GOLGA8CPA6NN73 597 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 FCHSD2O94868 740 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 FAM161AQ3B820 660 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 NUDT18Q6ZVK8 323 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 WNT2BQ93097 391 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 RBM27Q9P2N5 1060 aaKnown RBP8.79□□□□□ -1
HMGB1P29-201ENST00000505659 PNMA3Q9UL41 463 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 FECHP22830 423 aa8.78□□□□□ -1
HMGB1P29-201ENST00000505659 TATDN2Q93075 761 aa8.78□□□□□ -1
HMGB1P29-201ENST00000505659 ZFRQ96KR1 1074 aaKnown RBP8.78□□□□□ -1
HMGB1P29-201ENST00000505659 NBPF26B4DH59 902 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 BCAMP50895 628 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 FAM98CQ17RN3 349 aaKnown RBP8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 THSD4Q6ZMP0 1018 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 LAPTM4BQ86VI4 370 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 GPIHBP1Q8IV16 184 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 PTPN5P54829 565 aa8.76□□□□□ -1.01
HMGB1P29-201ENST00000505659 ANKK1Q8NFD2 765 aa8.75□□□□□ -1.01
HMGB1P29-201ENST00000505659 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.74□□□□□ -1.01
HMGB1P29-201ENST00000505659 HIC1Q14526 733 aa8.73□□□□□ -1.01
HMGB1P29-201ENST00000505659 ADGRG1Q9Y653 693 aa8.73□□□□□ -1.01
HMGB1P29-201ENST00000505659 TULP1O00294 542 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 GNPATO15228 680 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 LMOD2Q6P5Q4 547 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 SAMD7Q7Z3H4 446 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 EYA1Q99502 592 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 HCSTQ9UBK5 93 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 SOWAHBA6NEL2 793 aa8.71□□□□□ -1.02
HMGB1P29-201ENST00000505659 LRCH3Q96II8 777 aa8.7□□□□□ -1.02
HMGB1P29-201ENST00000505659 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.7□□□□□ -1.02
HMGB1P29-201ENST00000505659 SWT1Q5T5J6 900 aaKnown RBP8.68□□□□□ -1.02
HMGB1P29-201ENST00000505659 WBP1LQ9NX94 342 aa8.68□□□□□ -1.02
HMGB1P29-201ENST00000505659 HPS5Q9UPZ3 1129 aa8.68□□□□□ -1.02
HMGB1P29-201ENST00000505659 RNF40O75150 1001 aa8.67□□□□□ -1.02
HMGB1P29-201ENST00000505659 RBM46Q8TBY0 533 aaKnown RBP8.67□□□□□ -1.02
HMGB1P29-201ENST00000505659 NLRP7Q8WX94 980 aa8.67□□□□□ -1.02
HMGB1P29-201ENST00000505659 RCCD1A6NED2 376 aa8.66□□□□□ -1.02
HMGB1P29-201ENST00000505659 PXYLP1Q8TE99 480 aa8.66□□□□□ -1.02
HMGB1P29-201ENST00000505659 METTL3Q86U44 580 aaKnown RBP8.65□□□□□ -1.02
HMGB1P29-201ENST00000505659 PHOX2BQ99453 314 aa8.65□□□□□ -1.02
HMGB1P29-201ENST00000505659 TSR3Q9UJK0 312 aaKnown RBP8.64□□□□□ -1.03
HMGB1P29-201ENST00000505659 DNAJB2P25686 324 aa8.63□□□□□ -1.03
HMGB1P29-201ENST00000505659 TMEM134Q9H6X4 195 aa8.63□□□□□ -1.03
HMGB1P29-201ENST00000505659 ZC3H15Q8WU90 426 aaKnown RBP8.62□□□□□ -1.03
HMGB1P29-201ENST00000505659 OATP04181 439 aa8.61□□□□□ -1.03
HMGB1P29-201ENST00000505659 PPP4CP60510 307 aa8.61□□□□□ -1.03
HMGB1P29-201ENST00000505659 MAP2K5Q13163 448 aa8.61□□□□□ -1.03
HMGB1P29-201ENST00000505659 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.59□□□□□ -1.03
HMGB1P29-201ENST00000505659 HDGFP51858 240 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms