RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 LAS1LQ9Y4W2 734 aaKnown RBP13.86□□□□□ -0.19
LIMCH1-205ENST00000503057 WASHC2CQ9Y4E1 1318 aa13.84□□□□□ -0.19
LIMCH1-205ENST00000503057 PLEKHH2Q8IVE3 1493 aa13.84□□□□□ -0.19
LIMCH1-205ENST00000503057 SAFB2Q14151 953 aaKnown RBP eCLIP13.84□□□□□ -0.19
LIMCH1-205ENST00000503057 CFAP43Q8NDM7 1665 aa13.84□□□□□ -0.19
LIMCH1-205ENST00000503057 STK26Q9P289 416 aa13.83□□□□□ -0.2
LIMCH1-205ENST00000503057 CASC1Q6TDU7 716 aa13.81□□□□□ -0.2
LIMCH1-205ENST00000503057 C14orf37Q86TY3 774 aa13.81□□□□□ -0.2
LIMCH1-205ENST00000503057 RRP1P56182 461 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-205ENST00000503057 BRD4O60885 1362 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-205ENST00000503057 GRIN2AQ12879 1464 aa13.81□□□□□ -0.2
LIMCH1-205ENST00000503057 CAMSAP2Q08AD1 1489 aa13.8□□□□□ -0.2
LIMCH1-205ENST00000503057 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
LIMCH1-205ENST00000503057 U2AF1L5P0DN76 240 aaPredicted RBP13.8□□□□□ -0.2
LIMCH1-205ENST00000503057 U2AF1Q01081 240 aaKnown RBP eCLIP13.8□□□□□ -0.2
LIMCH1-205ENST00000503057 NBPF8Q3BBV2 869 aa13.79□□□□□ -0.2
LIMCH1-205ENST00000503057 TERF2IPQ9NYB0 399 aa13.79□□□□□ -0.2
LIMCH1-205ENST00000503057 MAPKBP1O60336 1514 aa13.78□□□□□ -0.2
LIMCH1-205ENST00000503057 CCDC146Q8IYE0 955 aa13.78□□□□□ -0.2
LIMCH1-205ENST00000503057 ABCC5O15440 1437 aa13.78□□□□□ -0.2
LIMCH1-205ENST00000503057 IPO8O15397 1037 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-205ENST00000503057 CALD1Q05682 793 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-205ENST00000503057 KIF14Q15058 1648 aa13.78□□□□□ -0.2
LIMCH1-205ENST00000503057 GOLGA6L22H0YM25 854 aa13.77□□□□□ -0.2
LIMCH1-205ENST00000503057 AKNAQ7Z591 1439 aa13.77□□□□□ -0.2
LIMCH1-205ENST00000503057 IPO9Q96P70 1041 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-205ENST00000503057 MLECQ14165 292 aa13.77□□□□□ -0.21
LIMCH1-205ENST00000503057 PMFBP1Q8TBY8 1022 aa13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 UGGT2Q9NYU1 1516 aa13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 CENPJQ9HC77 1338 aaPredicted RBP13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 HAP1P54257 671 aaPredicted RBP13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 TRAK1Q9UPV9 953 aa13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 RWDD1Q9H446 243 aaPredicted RBP13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 ZBTB7CA1YPR0 619 aa13.76□□□□□ -0.21
LIMCH1-205ENST00000503057 ANKRD30BQ9BXX2 1392 aa13.75□□□□□ -0.21
LIMCH1-205ENST00000503057 VGFO15240 615 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-205ENST00000503057 NGEFQ8N5V2 710 aa13.74□□□□□ -0.21
LIMCH1-205ENST00000503057 FANCIQ9NVI1 1328 aa13.74□□□□□ -0.21
LIMCH1-205ENST00000503057 ARXQ96QS3 562 aa13.74□□□□□ -0.21
LIMCH1-205ENST00000503057 E9PSI1 815 aa13.74□□□□□ -0.21
LIMCH1-205ENST00000503057 CGNL1Q0VF96 1302 aa13.73□□□□□ -0.21
LIMCH1-205ENST00000503057 EVC2Q86UK5 1308 aa13.73□□□□□ -0.21
LIMCH1-205ENST00000503057 CCDC141Q6ZP82 1450 aa13.72□□□□□ -0.21
LIMCH1-205ENST00000503057 CENPQQ7L2Z9 268 aaPredicted RBP13.72□□□□□ -0.21
LIMCH1-205ENST00000503057 PLB1Q6P1J6 1458 aa13.72□□□□□ -0.21
LIMCH1-205ENST00000503057 EXOC6Q8TAG9 804 aa13.72□□□□□ -0.21
LIMCH1-205ENST00000503057 CFAP44Q96MT7 982 aa13.71□□□□□ -0.21
LIMCH1-205ENST00000503057 ARHGEF11O15085 1522 aa13.71□□□□□ -0.22
LIMCH1-205ENST00000503057 NUTM2DQ5VT03 806 aaPredicted RBP13.7□□□□□ -0.22
LIMCH1-205ENST00000503057 RAPGEF6Q8TEU7 1601 aa13.7□□□□□ -0.22
LIMCH1-205ENST00000503057 DEKP35659 375 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-205ENST00000503057 RPRD2Q5VT52 1461 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-205ENST00000503057 ITPRIPQ8IWB1 547 aa13.69□□□□□ -0.22
LIMCH1-205ENST00000503057 HSCBQ8IWL3 235 aa13.69□□□□□ -0.22
LIMCH1-205ENST00000503057 OSCARQ8IYS5 282 aa13.69□□□□□ -0.22
LIMCH1-205ENST00000503057 KIF21AQ7Z4S6 1674 aa13.69□□□□□ -0.22
LIMCH1-205ENST00000503057 SMC4Q9NTJ3 1288 aa13.68□□□□□ -0.22
LIMCH1-205ENST00000503057 HSP90AB1P08238 724 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-205ENST00000503057 CRBNQ96SW2 442 aa13.68□□□□□ -0.22
LIMCH1-205ENST00000503057 ZNF608Q9ULD9 1512 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-205ENST00000503057 ITSN2Q9NZM3 1697 aa13.68□□□□□ -0.22
LIMCH1-205ENST00000503057 NCOA1Q15788 1441 aa13.67□□□□□ -0.22
LIMCH1-205ENST00000503057 TCOF1Q13428 1488 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-205ENST00000503057 NCLP19338 710 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-205ENST00000503057 PLIN1O60240 522 aa13.67□□□□□ -0.22
LIMCH1-205ENST00000503057 ADAMTS12P58397 1594 aa13.67□□□□□ -0.22
LIMCH1-205ENST00000503057 PTPRKQ15262 1439 aa13.66□□□□□ -0.22
LIMCH1-205ENST00000503057 PDE4AP27815 886 aa13.66□□□□□ -0.22
LIMCH1-205ENST00000503057 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
LIMCH1-205ENST00000503057 RTF1Q92541 710 aaKnown RBP13.66□□□□□ -0.22
LIMCH1-205ENST00000503057 AFAP1Q8N556 730 aa13.65□□□□□ -0.22
LIMCH1-205ENST00000503057 APAF1O14727 1248 aa13.65□□□□□ -0.22
LIMCH1-205ENST00000503057 DNAJC5BQ9UF47 199 aa13.65□□□□□ -0.22
LIMCH1-205ENST00000503057 ERBINQ96RT1 1412 aa13.65□□□□□ -0.22
LIMCH1-205ENST00000503057 LMOD3Q0VAK6 560 aa13.65□□□□□ -0.22
LIMCH1-205ENST00000503057 TRIM44Q96DX7 344 aaPredicted RBP13.65□□□□□ -0.22
LIMCH1-205ENST00000503057 NBPF1Q3BBV0 1214 aa13.64□□□□□ -0.23
LIMCH1-205ENST00000503057 SCAPERQ9BY12 1400 aa13.64□□□□□ -0.23
LIMCH1-205ENST00000503057 PNISRQ8TF01 805 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-205ENST00000503057 PLEKHG5O94827 1062 aa13.63□□□□□ -0.23
LIMCH1-205ENST00000503057 FAM161AQ3B820 660 aa13.63□□□□□ -0.23
LIMCH1-205ENST00000503057 RRP7AQ9Y3A4 280 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-205ENST00000503057 WDR62O43379 1518 aa13.62□□□□□ -0.23
LIMCH1-205ENST00000503057 KIAA0556O60303 1618 aa13.62□□□□□ -0.23
LIMCH1-205ENST00000503057 SOX12O15370 315 aa13.61□□□□□ -0.23
LIMCH1-205ENST00000503057 GPATCH8Q9UKJ3 1502 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-205ENST00000503057 RUNDC1Q96C34 613 aa13.61□□□□□ -0.23
LIMCH1-205ENST00000503057 PPP2R1AP30153 589 aa13.6□□□□□ -0.23
LIMCH1-205ENST00000503057 CLUAP1Q96AJ1 413 aa13.6□□□□□ -0.23
LIMCH1-205ENST00000503057 CCDC184Q52MB2 194 aa13.6□□□□□ -0.23
LIMCH1-205ENST00000503057 NUP153P49790 1475 aaKnown RBP13.6□□□□□ -0.23
LIMCH1-205ENST00000503057 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.6□□□□□ -0.23
LIMCH1-205ENST00000503057 ADAMTS8Q9UP79 889 aa13.6□□□□□ -0.23
LIMCH1-205ENST00000503057 ABCA5Q8WWZ7 1642 aa13.59□□□□□ -0.23
LIMCH1-205ENST00000503057 L1TD1Q5T7N2 865 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-205ENST00000503057 ZKSCAN2Q63HK3 967 aa13.59□□□□□ -0.23
LIMCH1-205ENST00000503057 PBRM1Q86U86 1689 aa13.58□□□□□ -0.23
LIMCH1-205ENST00000503057 C11orf95C9JLR9 678 aaPredicted RBP13.58□□□□□ -0.24
LIMCH1-205ENST00000503057 EID1Q9Y6B2 187 aa13.58□□□□□ -0.24
LIMCH1-205ENST00000503057 USP35Q9P2H5 1018 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms