RNA–Protein interactions for RNA: ENST00000502612.5

NEDD4-203, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene NEDD4, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-203ENST00000502612 RIMBP2O15034 1052 aa13.38□□□□□ -0.27
NEDD4-203ENST00000502612 PDE4DQ08499 809 aa13.38□□□□□ -0.27
NEDD4-203ENST00000502612 OTUD5Q96G74 571 aa13.37□□□□□ -0.27
NEDD4-203ENST00000502612 ZSWIM6Q9HCJ5 1215 aa13.37□□□□□ -0.27
NEDD4-203ENST00000502612 LHX6Q9UPM6 363 aa13.36□□□□□ -0.27
NEDD4-203ENST00000502612 FBXW7Q969H0 707 aa13.35□□□□□ -0.27
NEDD4-203ENST00000502612 ADAM33Q9BZ11 813 aa13.35□□□□□ -0.27
NEDD4-203ENST00000502612 ZDHHC16Q969W1 377 aa13.34□□□□□ -0.27
NEDD4-203ENST00000502612 KDM4CQ9H3R0 1056 aa13.33□□□□□ -0.28
NEDD4-203ENST00000502612 C6orf132Q5T0Z8 1188 aa13.31□□□□□ -0.28
NEDD4-203ENST00000502612 FAM161AQ3B820 660 aa13.29□□□□□ -0.28
NEDD4-203ENST00000502612 AMHR2Q16671 573 aa13.27□□□□□ -0.29
NEDD4-203ENST00000502612 HOXB1P14653 301 aaPredicted RBP13.26□□□□□ -0.29
NEDD4-203ENST00000502612 PADI6Q6TGC4 694 aa13.26□□□□□ -0.29
NEDD4-203ENST00000502612 PARP9Q8IXQ6 854 aa13.26□□□□□ -0.29
NEDD4-203ENST00000502612 GTF3C3Q9Y5Q9 886 aa13.26□□□□□ -0.29
NEDD4-203ENST00000502612 SNPHO15079 494 aa13.25□□□□□ -0.29
NEDD4-203ENST00000502612 LHX8Q68G74 356 aa13.25□□□□□ -0.29
NEDD4-203ENST00000502612 IL27Q8NEV9 243 aa13.24□□□□□ -0.29
NEDD4-203ENST00000502612 PHOX2BQ99453 314 aa13.24□□□□□ -0.29
NEDD4-203ENST00000502612 COL9A1P20849 921 aa13.23□□□□□ -0.29
NEDD4-203ENST00000502612 PPP4R3BQ5MIZ7 849 aa13.23□□□□□ -0.29
NEDD4-203ENST00000502612 TTLL12Q14166 644 aaPredicted RBP13.21□□□□□ -0.29
NEDD4-203ENST00000502612 REPIN1Q9BWE0 567 aaKnown RBP13.21□□□□□ -0.29
NEDD4-203ENST00000502612 NLRP7Q8WX94 980 aa13.2□□□□□ -0.3
NEDD4-203ENST00000502612 FAM117AQ9C073 453 aa13.2□□□□□ -0.3
NEDD4-203ENST00000502612 CERKQ8TCT0 537 aa13.19□□□□□ -0.3
NEDD4-203ENST00000502612 BCL2L12Q9HB09 334 aa13.18□□□□□ -0.3
NEDD4-203ENST00000502612 FAM198AQ9UFP1 575 aa13.18□□□□□ -0.3
NEDD4-203ENST00000502612 PRSS12P56730 875 aa13.17□□□□□ -0.3
NEDD4-203ENST00000502612 TTC13Q8NBP0 860 aa13.17□□□□□ -0.3
NEDD4-203ENST00000502612 ADGRG1Q9Y653 693 aa13.17□□□□□ -0.3
NEDD4-203ENST00000502612 GIGYF2Q6Y7W6 1299 aaKnown RBP13.16□□□□□ -0.3
NEDD4-203ENST00000502612 CDCA7LQ96GN5 454 aa13.16□□□□□ -0.3
NEDD4-203ENST00000502612 PSDA5PKW4 1024 aaPredicted RBP13.15□□□□□ -0.3
NEDD4-203ENST00000502612 MDM2Q00987 491 aaPredicted RBP13.15□□□□□ -0.3
NEDD4-203ENST00000502612 METTL3Q86U44 580 aaKnown RBP13.15□□□□□ -0.3
NEDD4-203ENST00000502612 PLEKHG3A1L390 1219 aa13.14□□□□□ -0.31
NEDD4-203ENST00000502612 MS4A1P11836 297 aa13.14□□□□□ -0.31
NEDD4-203ENST00000502612 RBM27Q9P2N5 1060 aaKnown RBP13.13□□□□□ -0.31
NEDD4-203ENST00000502612 C3orf80F5H4A9 247 aa13.12□□□□□ -0.31
NEDD4-203ENST00000502612 PTPREP23469 700 aa13.12□□□□□ -0.31
NEDD4-203ENST00000502612 PXYLP1Q8TE99 480 aa13.12□□□□□ -0.31
NEDD4-203ENST00000502612 TMUB1Q9BVT8 246 aa13.12□□□□□ -0.31
NEDD4-203ENST00000502612 TSKSQ9UJT2 592 aa13.12□□□□□ -0.31
NEDD4-203ENST00000502612 TIMELESSQ9UNS1 1208 aa13.12□□□□□ -0.31
NEDD4-203ENST00000502612 PPP1R3GB7ZBB8 358 aa13.11□□□□□ -0.31
NEDD4-203ENST00000502612 KCNK17Q96T54 332 aa13.11□□□□□ -0.31
NEDD4-203ENST00000502612 ST18O60284 1047 aa13.09□□□□□ -0.31
NEDD4-203ENST00000502612 OATP04181 439 aa13.08□□□□□ -0.32
NEDD4-203ENST00000502612 PROX2Q3B8N5 592 aa13.08□□□□□ -0.32
NEDD4-203ENST00000502612 GPCPD1Q9NPB8 672 aa13.08□□□□□ -0.32
NEDD4-203ENST00000502612 CLCN1P35523 988 aa13.07□□□□□ -0.32
NEDD4-203ENST00000502612 VARS2Q5ST30 1063 aaKnown RBP13.06□□□□□ -0.32
NEDD4-203ENST00000502612 MARVELD3Q96A59 401 aa13.06□□□□□ -0.32
NEDD4-203ENST00000502612 DDRGK1Q96HY6 314 aa13.06□□□□□ -0.32
NEDD4-203ENST00000502612 PSEN2P49810 448 aa13.05□□□□□ -0.32
NEDD4-203ENST00000502612 POTEEQ6S8J3 1075 aa13.05□□□□□ -0.32
NEDD4-203ENST00000502612 ERBB3P21860 1342 aa13.05□□□□□ -0.32
NEDD4-203ENST00000502612 TRIM6-TRIM34B2RNG4 842 aa13.04□□□□□ -0.32
NEDD4-203ENST00000502612 NUDT18Q6ZVK8 323 aa13.03□□□□□ -0.32
NEDD4-203ENST00000502612 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
NEDD4-203ENST00000502612 SSTR3P32745 418 aaPredicted RBP13.02□□□□□ -0.33
NEDD4-203ENST00000502612 EMP3P54852 163 aa13.02□□□□□ -0.33
NEDD4-203ENST00000502612 EYA1Q99502 592 aa13.02□□□□□ -0.33
NEDD4-203ENST00000502612 SMAPO00193 183 aa13.01□□□□□ -0.33
NEDD4-203ENST00000502612 FAM217BQ9NTX9 383 aaPredicted RBP13.01□□□□□ -0.33
NEDD4-203ENST00000502612 PNMA3Q9UL41 463 aa13.01□□□□□ -0.33
NEDD4-203ENST00000502612 AXIN2Q9Y2T1 843 aa13.01□□□□□ -0.33
NEDD4-203ENST00000502612 RCCD1A6NED2 376 aa13□□□□□ -0.33
NEDD4-203ENST00000502612 TATDN2Q93075 761 aa12.99□□□□□ -0.33
NEDD4-203ENST00000502612 ZBED2Q9BTP6 218 aa12.99□□□□□ -0.33
NEDD4-203ENST00000502612 DMRTA1Q5VZB9 504 aa12.98□□□□□ -0.33
NEDD4-203ENST00000502612 DAXXQ9UER7 740 aaPredicted RBP12.98□□□□□ -0.33
NEDD4-203ENST00000502612 FAM205CA6NFA0 338 aa12.97□□□□□ -0.33
NEDD4-203ENST00000502612 NBPF26B4DH59 902 aa12.97□□□□□ -0.33
NEDD4-203ENST00000502612 FAM163AQ96GL9 167 aaPredicted RBP12.97□□□□□ -0.33
NEDD4-203ENST00000502612 POTEB3A0JP26 581 aa12.96□□□□□ -0.33
NEDD4-203ENST00000502612 POTEBQ6S5H4 581 aa12.96□□□□□ -0.33
NEDD4-203ENST00000502612 BEGAINQ9BUH8 593 aa12.96□□□□□ -0.33
NEDD4-203ENST00000502612 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.95□□□□□ -0.34
NEDD4-203ENST00000502612 PACS2Q86VP3 889 aa12.95□□□□□ -0.34
NEDD4-203ENST00000502612 KIAA1468Q9P260 1216 aa12.95□□□□□ -0.34
NEDD4-203ENST00000502612 KCNH8Q96L42 1107 aa12.94□□□□□ -0.34
NEDD4-203ENST00000502612 ARHGAP33O14559 1287 aa12.93□□□□□ -0.34
NEDD4-203ENST00000502612 LCE2DQ5TA82 110 aaPredicted RBP12.93□□□□□ -0.34
NEDD4-203ENST00000502612 DNAJB2P25686 324 aa12.91□□□□□ -0.34
NEDD4-203ENST00000502612 C14orf37Q86TY3 774 aa12.91□□□□□ -0.34
NEDD4-203ENST00000502612 SEPT9Q9UHD8 586 aaPredicted RBP12.9□□□□□ -0.34
NEDD4-203ENST00000502612 ZNF687Q8N1G0 1237 aa12.89□□□□□ -0.35
NEDD4-203ENST00000502612 HS3ST6Q96QI5 342 aa12.89□□□□□ -0.35
NEDD4-203ENST00000502612 TMEM134Q9H6X4 195 aa12.89□□□□□ -0.35
NEDD4-203ENST00000502612 ONECUT3O60422 494 aaPredicted RBP12.88□□□□□ -0.35
NEDD4-203ENST00000502612 DDX11L8A8MPP1 907 aa12.87□□□□□ -0.35
NEDD4-203ENST00000502612 SH3D19Q5HYK7 790 aa12.87□□□□□ -0.35
NEDD4-203ENST00000502612 GOPCQ9HD26 462 aa12.86□□□□□ -0.35
NEDD4-203ENST00000502612 CD46P15529 392 aa12.85□□□□□ -0.35
NEDD4-203ENST00000502612 RABGEF1Q9UJ41 708 aa12.85□□□□□ -0.35
NEDD4-203ENST00000502612 VPS9D1Q9Y2B5 631 aa12.85□□□□□ -0.35
NEDD4-203ENST00000502612 PBX2P40425 430 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms