RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 RSPH4AQ5TD94 716 aa13.53□□□□□ -0.24
CLIP1-204ENST00000501271 KDM2AQ9Y2K7 1162 aa13.53□□□□□ -0.24
CLIP1-204ENST00000501271 DCAF11Q8TEB1 546 aa13.52□□□□□ -0.24
CLIP1-204ENST00000501271 TRPM1Q7Z4N2 1603 aa13.51□□□□□ -0.25
CLIP1-204ENST00000501271 CNGB1Q14028 1251 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-204ENST00000501271 IQGAP3Q86VI3 1631 aa13.51□□□□□ -0.25
CLIP1-204ENST00000501271 E9PCH4 1651 aa13.51□□□□□ -0.25
CLIP1-204ENST00000501271 ZCCHC11Q5TAX3 1644 aaKnown RBP13.5□□□□□ -0.25
CLIP1-204ENST00000501271 PLA2R1Q13018 1463 aa13.5□□□□□ -0.25
CLIP1-204ENST00000501271 CCDC144AA2RUR9 1427 aa13.5□□□□□ -0.25
CLIP1-204ENST00000501271 ROCK2O75116 1388 aaKnown RBP13.5□□□□□ -0.25
CLIP1-204ENST00000501271 ST20-MTHFSA0A0A6YYL1 179 aa13.49□□□□□ -0.25
CLIP1-204ENST00000501271 PLEKHH2Q8IVE3 1493 aa13.49□□□□□ -0.25
CLIP1-204ENST00000501271 PRAG1Q86YV5 1406 aa13.48□□□□□ -0.25
CLIP1-204ENST00000501271 CLASP1Q7Z460 1538 aa13.48□□□□□ -0.25
CLIP1-204ENST00000501271 MAGI2Q86UL8 1455 aa13.47□□□□□ -0.25
CLIP1-204ENST00000501271 DUOX2Q9NRD8 1548 aa13.46□□□□□ -0.25
CLIP1-204ENST00000501271 A2MP01023 1474 aa13.46□□□□□ -0.25
CLIP1-204ENST00000501271 MYT1Q01538 1121 aa13.46□□□□□ -0.25
CLIP1-204ENST00000501271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.46□□□□□ -0.252e-7■■□□□ 13.3
CLIP1-204ENST00000501271 ABCC1P33527 1531 aa13.45□□□□□ -0.26
CLIP1-204ENST00000501271 PLCH2O75038 1416 aa13.45□□□□□ -0.26
CLIP1-204ENST00000501271 RBM19Q9Y4C8 960 aaKnown RBP13.44□□□□□ -0.26
CLIP1-204ENST00000501271 ERBINQ96RT1 1412 aa13.44□□□□□ -0.26
CLIP1-204ENST00000501271 UHRF1BP1LA0JNW5 1464 aa13.43□□□□□ -0.26
CLIP1-204ENST00000501271 RGL3Q3MIN7 710 aa13.43□□□□□ -0.26
CLIP1-204ENST00000501271 LAMC1P11047 1609 aa13.43□□□□□ -0.26
CLIP1-204ENST00000501271 ERICH6BQ5W0A0 696 aa13.43□□□□□ -0.26
CLIP1-204ENST00000501271 NBPF1Q3BBV0 1214 aa13.42□□□□□ -0.26
CLIP1-204ENST00000501271 PRDM15P57071 1507 aaPredicted RBP13.42□□□□□ -0.26
CLIP1-204ENST00000501271 GPRASP1Q5JY77 1395 aa13.41□□□□□ -0.26
CLIP1-204ENST00000501271 SMG6Q86US8 1419 aaKnown RBP13.41□□□□□ -0.26
CLIP1-204ENST00000501271 TRAPPC8Q9Y2L5 1435 aa13.41□□□□□ -0.26
CLIP1-204ENST00000501271 ATP10AO60312 1499 aa13.41□□□□□ -0.26
CLIP1-204ENST00000501271 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
CLIP1-204ENST00000501271 EIF2AK4Q9P2K8 1649 aaKnown RBP13.41□□□□□ -0.26
CLIP1-204ENST00000501271 PPP4R2Q9NY27 417 aa13.4□□□□□ -0.26
CLIP1-204ENST00000501271 EFCAB2Q5VUJ9 269 aa13.39□□□□□ -0.27
CLIP1-204ENST00000501271 TMC1Q8TDI8 760 aa13.39□□□□□ -0.27
CLIP1-204ENST00000501271 COL17A1Q9UMD9 1497 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-204ENST00000501271 RNF17Q9BXT8 1623 aaKnown RBP13.38□□□□□ -0.27
CLIP1-204ENST00000501271 KTN1Q86UP2 1357 aaKnown RBP13.38□□□□□ -0.27
CLIP1-204ENST00000501271 MYBBP1AQ9BQG0 1328 aaKnown RBP13.38□□□□□ -0.27
CLIP1-204ENST00000501271 SENP3-EIF4A1A0A087X0R7 540 aa13.38□□□□□ -0.27
CLIP1-204ENST00000501271 BRD4O60885 1362 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-204ENST00000501271 LRPPRCP42704 1394 aaKnown RBP13.37□□□□□ -0.27
CLIP1-204ENST00000501271 ZFYVE16Q7Z3T8 1539 aa13.37□□□□□ -0.27
CLIP1-204ENST00000501271 NUDCQ9Y266 331 aa13.37□□□□□ -0.27
CLIP1-204ENST00000501271 SLC24A1O60721 1099 aa13.36□□□□□ -0.27
CLIP1-204ENST00000501271 RALBP1Q15311 655 aa13.36□□□□□ -0.27
CLIP1-204ENST00000501271 ARAP3Q8WWN8 1544 aa13.35□□□□□ -0.27
CLIP1-204ENST00000501271 DISP3Q9P2K9 1392 aa13.35□□□□□ -0.27
CLIP1-204ENST00000501271 TESK2Q96S53 571 aa13.35□□□□□ -0.27
CLIP1-204ENST00000501271 B4GALNT3Q6L9W6 998 aa13.34□□□□□ -0.27
CLIP1-204ENST00000501271 PARD3Q8TEW0 1356 aa13.34□□□□□ -0.27
CLIP1-204ENST00000501271 CEP152O94986 1710 aa13.34□□□□□ -0.27
CLIP1-204ENST00000501271 SPHKAPQ2M3C7 1700 aa13.34□□□□□ -0.27
CLIP1-204ENST00000501271 DEPDC5O75140 1603 aa13.34□□□□□ -0.27
CLIP1-204ENST00000501271 MADDQ8WXG6 1647 aa13.34□□□□□ -0.27
CLIP1-204ENST00000501271 SPAG9O60271 1321 aaKnown RBP13.33□□□□□ -0.28
CLIP1-204ENST00000501271 TRPM2O94759 1503 aa13.32□□□□□ -0.28
CLIP1-204ENST00000501271 PER1O15534 1290 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-204ENST00000501271 AFAP1Q8N556 730 aa13.32□□□□□ -0.28
CLIP1-204ENST00000501271 ANP32EQ9BTT0 268 aa13.32□□□□□ -0.28
CLIP1-204ENST00000501271 RTEL1-TNFRSF6BF6WH68 1400 aa13.32□□□□□ -0.28
CLIP1-204ENST00000501271 RNF123Q5XPI4 1314 aa13.32□□□□□ -0.28
CLIP1-204ENST00000501271 ABCA9Q8IUA7 1624 aa13.32□□□□□ -0.28
CLIP1-204ENST00000501271 INO80Q9ULG1 1556 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-204ENST00000501271 CLTCL1P53675 1640 aa13.31□□□□□ -0.28
CLIP1-204ENST00000501271 WDR7Q9Y4E6 1490 aa13.31□□□□□ -0.28
CLIP1-204ENST00000501271 IQGAP1P46940 1657 aa13.31□□□□□ -0.28
CLIP1-204ENST00000501271 TET3O43151 1660 aa13.3□□□□□ -0.28
CLIP1-204ENST00000501271 ATP7AQ04656 1500 aa13.3□□□□□ -0.28
CLIP1-204ENST00000501271 NLRP13Q86W25 1043 aa13.3□□□□□ -0.28
CLIP1-204ENST00000501271 FANCAO15360 1455 aa13.28□□□□□ -0.28
CLIP1-204ENST00000501271 PTPRTO14522 1441 aa13.28□□□□□ -0.28
CLIP1-204ENST00000501271 VWDEQ8N2E2 1590 aa13.27□□□□□ -0.28
CLIP1-204ENST00000501271 TMF1P82094 1093 aa13.27□□□□□ -0.29
CLIP1-204ENST00000501271 PANK3Q9H999 370 aa13.27□□□□□ -0.29
CLIP1-204ENST00000501271 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
CLIP1-204ENST00000501271 MROH1Q8NDA8 1641 aa13.25□□□□□ -0.29
CLIP1-204ENST00000501271 WASHC2CQ9Y4E1 1318 aa13.25□□□□□ -0.29
CLIP1-204ENST00000501271 MSH5O43196 834 aa13.24□□□□□ -0.29
CLIP1-204ENST00000501271 ADGRL1O94910 1474 aa13.24□□□□□ -0.29
CLIP1-204ENST00000501271 FANCIQ9NVI1 1328 aa13.24□□□□□ -0.29
CLIP1-204ENST00000501271 SCAPERQ9BY12 1400 aa13.22□□□□□ -0.29
CLIP1-204ENST00000501271 SALL2Q9Y467 1007 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-204ENST00000501271 SCAF11Q99590 1463 aaKnown RBP13.22□□□□□ -0.29
CLIP1-204ENST00000501271 BLMP54132 1417 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-204ENST00000501271 UGGT1Q9NYU2 1555 aa13.22□□□□□ -0.29
CLIP1-204ENST00000501271 MYOM1P52179 1685 aa13.22□□□□□ -0.29
CLIP1-204ENST00000501271 KIAA1210Q9ULL0 1709 aa13.21□□□□□ -0.29
CLIP1-204ENST00000501271 KANK1Q14678 1352 aa13.21□□□□□ -0.29
CLIP1-204ENST00000501271 KIDINS220Q9ULH0 1771 aa13.21□□□□□ -0.29
CLIP1-204ENST00000501271 KIF3BO15066 747 aa13.21□□□□□ -0.3
CLIP1-204ENST00000501271 SYNMO15061 1565 aa13.21□□□□□ -0.3
CLIP1-204ENST00000501271 ZMYM4Q5VZL5 1548 aa13.21□□□□□ -0.3
CLIP1-204ENST00000501271 ASXL2Q76L83 1435 aa13.2□□□□□ -0.3
CLIP1-204ENST00000501271 NEURL4Q96JN8 1562 aa13.2□□□□□ -0.3
CLIP1-204ENST00000501271 CCDC136Q96JN2 1154 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms