RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-212ENST00000498041 EVI5O60447 810 aa7.13□□□□□ -1.27
RIF1-212ENST00000498041 BCL2L12Q9HB09 334 aa7.13□□□□□ -1.27
RIF1-212ENST00000498041 FOSBP53539 338 aa7.12□□□□□ -1.27
RIF1-212ENST00000498041 THSD4Q6ZMP0 1018 aa7.12□□□□□ -1.27
RIF1-212ENST00000498041 SPDYE16A6NNV3 312 aaPredicted RBP7.11□□□□□ -1.27
RIF1-212ENST00000498041 ADAM33Q9BZ11 813 aa7.11□□□□□ -1.27
RIF1-212ENST00000498041 PDIA6Q15084 440 aa7.1□□□□□ -1.27
RIF1-212ENST00000498041 ZDHHC16Q969W1 377 aa7.1□□□□□ -1.27
RIF1-212ENST00000498041 ZBED2Q9BTP6 218 aa7.1□□□□□ -1.27
RIF1-212ENST00000498041 JPH4Q96JJ6 628 aa7.08□□□□□ -1.28
RIF1-212ENST00000498041 NBPF3Q9H094 633 aa7.08□□□□□ -1.28
RIF1-212ENST00000498041 ANO8Q9HCE9 1232 aaPredicted RBP7.08□□□□□ -1.28
RIF1-212ENST00000498041 BHMG1C9JSJ3 638 aaPredicted RBP7.07□□□□□ -1.28
RIF1-212ENST00000498041 NBR1Q14596 966 aa7.07□□□□□ -1.28
RIF1-212ENST00000498041 PROX2Q3B8N5 592 aa7.07□□□□□ -1.28
RIF1-212ENST00000498041 IRX2Q9BZI1 471 aaPredicted RBP7.07□□□□□ -1.28
RIF1-212ENST00000498041 SLC4A5Q9BY07 1137 aa7.06□□□□□ -1.28
RIF1-212ENST00000498041 A0A0G2JS52 829 aa7.04□□□□□ -1.28
RIF1-212ENST00000498041 SEMA3EO15041 775 aa7.04□□□□□ -1.28
RIF1-212ENST00000498041 BCAMP50895 628 aa7.04□□□□□ -1.28
RIF1-212ENST00000498041 ANKK1Q8NFD2 765 aa7.04□□□□□ -1.28
RIF1-212ENST00000498041 COL9A1P20849 921 aa7.03□□□□□ -1.28
RIF1-212ENST00000498041 BCANQ96GW7 911 aa7.03□□□□□ -1.28
RIF1-212ENST00000498041 PCDHGA10Q9Y5H3 936 aa7.03□□□□□ -1.28
RIF1-212ENST00000498041 TESPA1A2RU30 521 aaPredicted RBP7.02□□□□□ -1.29
RIF1-212ENST00000498041 DDX12PQ92771 950 aa7.02□□□□□ -1.29
RIF1-212ENST00000498041 PPP1R3GB7ZBB8 358 aa7.01□□□□□ -1.29
RIF1-212ENST00000498041 PHF14O94880 888 aa7.01□□□□□ -1.29
RIF1-212ENST00000498041 SMYD5Q6GMV2 418 aa7.01□□□□□ -1.29
RIF1-212ENST00000498041 RBM33Q96EV2 1170 aaKnown RBP7.01□□□□□ -1.29
RIF1-212ENST00000498041 SEPT9Q9UHD8 586 aaPredicted RBP7.01□□□□□ -1.29
RIF1-212ENST00000498041 GRXCR2A6NFK2 248 aa7□□□□□ -1.29
RIF1-212ENST00000498041 MLLT3P42568 568 aaPredicted RBP7□□□□□ -1.29
RIF1-212ENST00000498041 EPAS1Q99814 870 aa7□□□□□ -1.29
RIF1-212ENST00000498041 KIAA1468Q9P260 1216 aa7□□□□□ -1.29
RIF1-212ENST00000498041 RABGEF1Q9UJ41 708 aa7□□□□□ -1.29
RIF1-212ENST00000498041 TYW1BQ6NUM6 668 aa6.99□□□□□ -1.29
RIF1-212ENST00000498041 TULP1O00294 542 aaPredicted RBP6.98□□□□□ -1.29
RIF1-212ENST00000498041 FBXW7Q969H0 707 aa6.98□□□□□ -1.29
RIF1-212ENST00000498041 WBP1LQ9NX94 342 aa6.97□□□□□ -1.29
RIF1-212ENST00000498041 RGS20O76081 388 aa6.96□□□□□ -1.3
RIF1-212ENST00000498041 OSBPP22059 807 aa6.96□□□□□ -1.3
RIF1-212ENST00000498041 IFFO2Q5TF58 517 aa6.96□□□□□ -1.3
RIF1-212ENST00000498041 Q6ZNB5 142 aa6.96□□□□□ -1.3
RIF1-212ENST00000498041 ZFRQ96KR1 1074 aaKnown RBP6.96□□□□□ -1.3
RIF1-212ENST00000498041 SOWAHBA6NEL2 793 aa6.95□□□□□ -1.3
RIF1-212ENST00000498041 EN1Q05925 392 aaPredicted RBP6.94□□□□□ -1.3
RIF1-212ENST00000498041 C6orf132Q5T0Z8 1188 aa6.94□□□□□ -1.3
RIF1-212ENST00000498041 MAP3K7O43318 606 aa6.93□□□□□ -1.3
RIF1-212ENST00000498041 KCNC4Q03721 635 aa6.93□□□□□ -1.3
RIF1-212ENST00000498041 HPS5Q9UPZ3 1129 aa6.93□□□□□ -1.3
RIF1-212ENST00000498041 PRIM1P49642 420 aaKnown RBP6.92□□□□□ -1.3
RIF1-212ENST00000498041 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.92□□□□□ -1.3
RIF1-212ENST00000498041 LAPTM4BQ86VI4 370 aa6.92□□□□□ -1.3
RIF1-212ENST00000498041 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.92□□□□□ -1.3
RIF1-212ENST00000498041 ITGBL1O95965 494 aaPredicted RBP6.91□□□□□ -1.3
RIF1-212ENST00000498041 RBM26Q5T8P6 1007 aaKnown RBP6.91□□□□□ -1.3
RIF1-212ENST00000498041 LRCH3Q96II8 777 aa6.91□□□□□ -1.3
RIF1-212ENST00000498041 TRIM6-TRIM34B2RNG4 842 aa6.9□□□□□ -1.3
RIF1-212ENST00000498041 LMOD2Q6P5Q4 547 aa6.9□□□□□ -1.3
RIF1-212ENST00000498041 NUTM2FA1L443 756 aa6.89□□□□□ -1.31
RIF1-212ENST00000498041 SMAPO00193 183 aa6.89□□□□□ -1.31
RIF1-212ENST00000498041 FAM98CQ17RN3 349 aaKnown RBP6.89□□□□□ -1.31
RIF1-212ENST00000498041 TSR1Q2NL82 804 aaKnown RBP6.89□□□□□ -1.31
RIF1-212ENST00000498041 TSR3Q9UJK0 312 aaKnown RBP6.89□□□□□ -1.31
RIF1-212ENST00000498041 RNF40O75150 1001 aa6.88□□□□□ -1.31
RIF1-212ENST00000498041 GPIHBP1Q8IV16 184 aa6.87□□□□□ -1.31
RIF1-212ENST00000498041 CERKQ8TCT0 537 aa6.87□□□□□ -1.31
RIF1-212ENST00000498041 PPP4CP60510 307 aa6.86□□□□□ -1.31
RIF1-212ENST00000498041 NYAP1Q6ZVC0 841 aa6.86□□□□□ -1.31
RIF1-212ENST00000498041 PACS2Q86VP3 889 aa6.86□□□□□ -1.31
RIF1-212ENST00000498041 CDHR5Q9HBB8 845 aa6.86□□□□□ -1.31
RIF1-212ENST00000498041 FCHSD2O94868 740 aa6.85□□□□□ -1.31
RIF1-212ENST00000498041 PTGDRQ13258 359 aa6.85□□□□□ -1.31
RIF1-212ENST00000498041 NPDC1Q9NQX5 325 aaPredicted RBP6.85□□□□□ -1.31
RIF1-212ENST00000498041 TSKSQ9UJT2 592 aa6.85□□□□□ -1.31
RIF1-212ENST00000498041 ONECUT3O60422 494 aaPredicted RBP6.84□□□□□ -1.31
RIF1-212ENST00000498041 GFRA3O60609 400 aa6.84□□□□□ -1.31
RIF1-212ENST00000498041 SAMD7Q7Z3H4 446 aa6.84□□□□□ -1.31
RIF1-212ENST00000498041 GPR37O15354 613 aa6.82□□□□□ -1.32
RIF1-212ENST00000498041 PRSS12P56730 875 aa6.82□□□□□ -1.32
RIF1-212ENST00000498041 HIC1Q14526 733 aa6.82□□□□□ -1.32
RIF1-212ENST00000498041 RBM27Q9P2N5 1060 aaKnown RBP6.82□□□□□ -1.32
RIF1-212ENST00000498041 ZC3H15Q8WU90 426 aaKnown RBP6.81□□□□□ -1.32
RIF1-212ENST00000498041 CDCA7LQ96GN5 454 aa6.81□□□□□ -1.32
RIF1-212ENST00000498041 PRKD2Q9BZL6 878 aa6.81□□□□□ -1.32
RIF1-212ENST00000498041 PNMA3Q9UL41 463 aa6.81□□□□□ -1.32
RIF1-212ENST00000498041 GNPATO15228 680 aa6.8□□□□□ -1.32
RIF1-212ENST00000498041 MTRQ99707 1265 aa6.79□□□□□ -1.32
RIF1-212ENST00000498041 C3orf80F5H4A9 247 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 ZMYND10O75800 440 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 TJAP1Q5JTD0 557 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 TRAF7Q6Q0C0 670 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 PADI6Q6TGC4 694 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 TTC13Q8NBP0 860 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 ZNF516Q92618 1163 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 FAM198AQ9UFP1 575 aa6.78□□□□□ -1.32
RIF1-212ENST00000498041 HDGFP51858 240 aaKnown RBP6.77□□□□□ -1.33
RIF1-212ENST00000498041 PPP1R18Q6NYC8 613 aa6.77□□□□□ -1.33
RIF1-212ENST00000498041 TATDN2Q93075 761 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms