RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-208ENST00000497498 PPP1R3GB7ZBB8 358 aa10.19□□□□□ -0.78
CBX3-208ENST00000497498 DDX12PQ92771 950 aa10.18□□□□□ -0.78
CBX3-208ENST00000497498 STAC3Q96MF2 364 aa10.18□□□□□ -0.78
CBX3-208ENST00000497498 TSHZ2Q9NRE2 1034 aa10.18□□□□□ -0.78
CBX3-208ENST00000497498 HCSTQ9UBK5 93 aa10.18□□□□□ -0.78
CBX3-208ENST00000497498 COL9A1P20849 921 aa10.17□□□□□ -0.78
CBX3-208ENST00000497498 C6orf132Q5T0Z8 1188 aa10.16□□□□□ -0.78
CBX3-208ENST00000497498 KCTD12Q96CX2 325 aaKnown RBP10.14□□□□□ -0.79
CBX3-208ENST00000497498 PROX2Q3B8N5 592 aa10.12□□□□□ -0.79
CBX3-208ENST00000497498 NBPF3Q9H094 633 aa10.12□□□□□ -0.79
CBX3-208ENST00000497498 RABGEF1Q9UJ41 708 aa10.12□□□□□ -0.79
CBX3-208ENST00000497498 EN1Q05925 392 aaPredicted RBP10.11□□□□□ -0.79
CBX3-208ENST00000497498 NBR1Q14596 966 aa10.11□□□□□ -0.79
CBX3-208ENST00000497498 MRPL50Q8N5N7 158 aaKnown RBP10.11□□□□□ -0.79
CBX3-208ENST00000497498 RBM33Q96EV2 1170 aaKnown RBP10.11□□□□□ -0.79
CBX3-208ENST00000497498 ONECUT3O60422 494 aaPredicted RBP10.1□□□□□ -0.79
CBX3-208ENST00000497498 MAP3K7O43318 606 aa10.07□□□□□ -0.8
CBX3-208ENST00000497498 PRIM1P49642 420 aaKnown RBP10.06□□□□□ -0.8
CBX3-208ENST00000497498 TSR1Q2NL82 804 aaKnown RBP10.06□□□□□ -0.8
CBX3-208ENST00000497498 THSD4Q6ZMP0 1018 aa10.06□□□□□ -0.8
CBX3-208ENST00000497498 KIAA1468Q9P260 1216 aa10.06□□□□□ -0.8
CBX3-208ENST00000497498 GRXCR2A6NFK2 248 aa10.05□□□□□ -0.8
CBX3-208ENST00000497498 GOLGA8CPA6NN73 597 aa10.05□□□□□ -0.8
CBX3-208ENST00000497498 TRIM6-TRIM34B2RNG4 842 aa10.05□□□□□ -0.8
CBX3-208ENST00000497498 LAPTM4BQ86VI4 370 aa10.05□□□□□ -0.8
CBX3-208ENST00000497498 ARHGEF1Q92888 912 aaKnown RBP10.05□□□□□ -0.8
CBX3-208ENST00000497498 WNT2BQ93097 391 aa10.05□□□□□ -0.8
CBX3-208ENST00000497498 OSBPP22059 807 aa10.04□□□□□ -0.8
CBX3-208ENST00000497498 PLCB2Q00722 1185 aa10.04□□□□□ -0.8
CBX3-208ENST00000497498 PTPN5P54829 565 aa10.03□□□□□ -0.8
CBX3-208ENST00000497498 KCNV2Q8TDN2 545 aa10.03□□□□□ -0.8
CBX3-208ENST00000497498 PLA2G2EQ9NZK7 142 aa10.02□□□□□ -0.81
CBX3-208ENST00000497498 CERKQ8TCT0 537 aa10.01□□□□□ -0.81
CBX3-208ENST00000497498 TSKSQ9UJT2 592 aa10□□□□□ -0.81
CBX3-208ENST00000497498 ANKK1Q8NFD2 765 aa9.99□□□□□ -0.81
CBX3-208ENST00000497498 ZFRQ96KR1 1074 aaKnown RBP9.99□□□□□ -0.81
CBX3-208ENST00000497498 PRSS12P56730 875 aa9.98□□□□□ -0.81
CBX3-208ENST00000497498 FAM98CQ17RN3 349 aaKnown RBP9.98□□□□□ -0.81
CBX3-208ENST00000497498 PACS2Q86VP3 889 aa9.98□□□□□ -0.81
CBX3-208ENST00000497498 SEPT9Q9UHD8 586 aaPredicted RBP9.98□□□□□ -0.81
CBX3-208ENST00000497498 CDCA7LQ96GN5 454 aa9.97□□□□□ -0.81
CBX3-208ENST00000497498 SOWAHBA6NEL2 793 aa9.96□□□□□ -0.82
CBX3-208ENST00000497498 P3H3Q8IVL6 736 aa9.95□□□□□ -0.82
CBX3-208ENST00000497498 CDHR5Q9HBB8 845 aa9.95□□□□□ -0.82
CBX3-208ENST00000497498 FAM198AQ9UFP1 575 aa9.95□□□□□ -0.82
CBX3-208ENST00000497498 MLLT3P42568 568 aaPredicted RBP9.94□□□□□ -0.82
CBX3-208ENST00000497498 BCAMP50895 628 aa9.93□□□□□ -0.82
CBX3-208ENST00000497498 NPDC1Q9NQX5 325 aaPredicted RBP9.93□□□□□ -0.82
CBX3-208ENST00000497498 RBM27Q9P2N5 1060 aaKnown RBP9.93□□□□□ -0.82
CBX3-208ENST00000497498 IFFO2Q5TF58 517 aa9.91□□□□□ -0.82
CBX3-208ENST00000497498 C3orf80F5H4A9 247 aa9.9□□□□□ -0.82
CBX3-208ENST00000497498 TTC13Q8NBP0 860 aa9.9□□□□□ -0.82
CBX3-208ENST00000497498 NYAP1Q6ZVC0 841 aa9.89□□□□□ -0.83
CBX3-208ENST00000497498 TATDN2Q93075 761 aa9.89□□□□□ -0.83
CBX3-208ENST00000497498 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.89□□□□□ -0.83
CBX3-208ENST00000497498 NBPF26B4DH59 902 aa9.88□□□□□ -0.83
CBX3-208ENST00000497498 LRCH3Q96II8 777 aa9.88□□□□□ -0.83
CBX3-208ENST00000497498 WBP1LQ9NX94 342 aa9.88□□□□□ -0.83
CBX3-208ENST00000497498 SMAPO00193 183 aa9.87□□□□□ -0.83
CBX3-208ENST00000497498 TSR3Q9UJK0 312 aaKnown RBP9.86□□□□□ -0.83
CBX3-208ENST00000497498 PNMA3Q9UL41 463 aa9.86□□□□□ -0.83
CBX3-208ENST00000497498 SEMA3EO15041 775 aa9.85□□□□□ -0.83
CBX3-208ENST00000497498 ITGBL1O95965 494 aaPredicted RBP9.84□□□□□ -0.83
CBX3-208ENST00000497498 PADI6Q6TGC4 694 aa9.84□□□□□ -0.83
CBX3-208ENST00000497498 NUDT18Q6ZVK8 323 aa9.84□□□□□ -0.83
CBX3-208ENST00000497498 HPS5Q9UPZ3 1129 aa9.84□□□□□ -0.83
CBX3-208ENST00000497498 HAP1P54257 671 aaPredicted RBP9.83□□□□□ -0.84
CBX3-208ENST00000497498 PTGDRQ13258 359 aa9.83□□□□□ -0.84
CBX3-208ENST00000497498 SAMD7Q7Z3H4 446 aa9.83□□□□□ -0.84
CBX3-208ENST00000497498 KDM2AQ9Y2K7 1162 aa9.8□□□□□ -0.84
CBX3-208ENST00000497498 TESPA1A2RU30 521 aaPredicted RBP9.79□□□□□ -0.84
CBX3-208ENST00000497498 PPP4CP60510 307 aa9.79□□□□□ -0.84
CBX3-208ENST00000497498 EYA1Q99502 592 aa9.79□□□□□ -0.84
CBX3-208ENST00000497498 A0A0G2JS52 829 aa9.78□□□□□ -0.84
CBX3-208ENST00000497498 NUTM2FA1L443 756 aa9.78□□□□□ -0.84
CBX3-208ENST00000497498 HDGFP51858 240 aaKnown RBP9.77□□□□□ -0.85
CBX3-208ENST00000497498 RGS20O76081 388 aa9.75□□□□□ -0.85
CBX3-208ENST00000497498 FCHSD2O94868 740 aa9.74□□□□□ -0.85
CBX3-208ENST00000497498 KCNC4Q03721 635 aa9.74□□□□□ -0.85
CBX3-208ENST00000497498 SWT1Q5T5J6 900 aaKnown RBP9.73□□□□□ -0.85
CBX3-208ENST00000497498 SMYD5Q6GMV2 418 aa9.73□□□□□ -0.85
CBX3-208ENST00000497498 ADGRG1Q9Y653 693 aa9.73□□□□□ -0.85
CBX3-208ENST00000497498 VSIG10Q8N0Z9 540 aa9.72□□□□□ -0.85
CBX3-208ENST00000497498 RBM26Q5T8P6 1007 aaKnown RBP9.71□□□□□ -0.86
CBX3-208ENST00000497498 SLF2Q8IX21 1173 aa9.71□□□□□ -0.86
CBX3-208ENST00000497498 RBM46Q8TBY0 533 aaKnown RBP9.71□□□□□ -0.86
CBX3-208ENST00000497498 NECTIN2Q92692 538 aa9.71□□□□□ -0.86
CBX3-208ENST00000497498 TJAP1Q5JTD0 557 aa9.7□□□□□ -0.86
CBX3-208ENST00000497498 RNF40O75150 1001 aa9.69□□□□□ -0.86
CBX3-208ENST00000497498 DNAJB2P25686 324 aa9.69□□□□□ -0.86
CBX3-208ENST00000497498 APLP1P51693 650 aa9.69□□□□□ -0.86
CBX3-208ENST00000497498 HIC1Q14526 733 aa9.68□□□□□ -0.86
CBX3-208ENST00000497498 TMEM134Q9H6X4 195 aa9.68□□□□□ -0.86
CBX3-208ENST00000497498 FAM161AQ3B820 660 aa9.67□□□□□ -0.86
CBX3-208ENST00000497498 RCCD1A6NED2 376 aa9.66□□□□□ -0.86
CBX3-208ENST00000497498 GPR37O15354 613 aa9.66□□□□□ -0.86
CBX3-208ENST00000497498 SLC4A3P48751 1232 aa9.66□□□□□ -0.86
CBX3-208ENST00000497498 MTRQ99707 1265 aa9.66□□□□□ -0.86
CBX3-208ENST00000497498 IL21Q9HBE4 155 aa9.65□□□□□ -0.86
CBX3-208ENST00000497498 OATP04181 439 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms