RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ANP32CO43423 234 aa11.64□□□□□ -0.55
USP54-215ENST00000497106 KDM2AQ9Y2K7 1162 aa11.63□□□□□ -0.55
USP54-215ENST00000497106 ANKRD30BQ9BXX2 1392 aa11.63□□□□□ -0.55
USP54-215ENST00000497106 L3MBTL2Q969R5 705 aa11.63□□□□□ -0.55
USP54-215ENST00000497106 A2MP01023 1474 aa11.63□□□□□ -0.55
USP54-215ENST00000497106 HDGFP51858 240 aaKnown RBP11.62□□□□□ -0.55
USP54-215ENST00000497106 CDC42BPBQ9Y5S2 1711 aa11.62□□□□□ -0.55
USP54-215ENST00000497106 DCAF11Q8TEB1 546 aa11.62□□□□□ -0.55
USP54-215ENST00000497106 POLR3GLQ9BT43 218 aa11.62□□□□□ -0.55
USP54-215ENST00000497106 GLI2P10070 1586 aa11.61□□□□□ -0.55
USP54-215ENST00000497106 RGL3Q3MIN7 710 aa11.61□□□□□ -0.55
USP54-215ENST00000497106 CARD11Q9BXL7 1154 aa11.6□□□□□ -0.55
USP54-215ENST00000497106 CDCA8Q53HL2 280 aa11.6□□□□□ -0.55
USP54-215ENST00000497106 RPRD2Q5VT52 1461 aaKnown RBP11.59□□□□□ -0.55
USP54-215ENST00000497106 MLH3Q9UHC1 1453 aa11.59□□□□□ -0.55
USP54-215ENST00000497106 KDM5DQ9BY66 1539 aa11.59□□□□□ -0.55
USP54-215ENST00000497106 FAM135AQ9P2D6 1515 aa11.59□□□□□ -0.55
USP54-215ENST00000497106 MAGI2Q86UL8 1455 aa11.59□□□□□ -0.55
USP54-215ENST00000497106 RAPGEF3O95398 923 aa11.59□□□□□ -0.55
USP54-215ENST00000497106 PZPP20742 1482 aa11.57□□□□□ -0.56
USP54-215ENST00000497106 ZFYVE16Q7Z3T8 1539 aa11.57□□□□□ -0.56
USP54-215ENST00000497106 EIF3AQ14152 1382 aaKnown RBP11.57□□□□□ -0.56
USP54-215ENST00000497106 HECW2Q9P2P5 1572 aa11.56□□□□□ -0.56
USP54-215ENST00000497106 ROCK2O75116 1388 aaKnown RBP11.56□□□□□ -0.56
USP54-215ENST00000497106 ARHGEF12Q9NZN5 1544 aa11.54□□□□□ -0.56
USP54-215ENST00000497106 BCANQ96GW7 911 aa11.53□□□□□ -0.56
USP54-215ENST00000497106 MLECQ14165 292 aa11.53□□□□□ -0.56
USP54-215ENST00000497106 ATP10AO60312 1499 aa11.53□□□□□ -0.56
USP54-215ENST00000497106 RPGRIP1LQ68CZ1 1315 aa11.53□□□□□ -0.56
USP54-215ENST00000497106 HSPA5P11021 654 aaKnown RBP11.53□□□□□ -0.56
USP54-215ENST00000497106 SLC52A1Q9NWF4 448 aa11.53□□□□□ -0.56
USP54-215ENST00000497106 EIF2AK4Q9P2K8 1649 aaKnown RBP11.52□□□□□ -0.56
USP54-215ENST00000497106 UNC13BO14795 1591 aa11.52□□□□□ -0.57
USP54-215ENST00000497106 DDX10Q13206 875 aaKnown RBP11.51□□□□□ -0.57
USP54-215ENST00000497106 VGFO15240 615 aaPredicted RBP11.51□□□□□ -0.57
USP54-215ENST00000497106 INO80Q9ULG1 1556 aaPredicted RBP11.5□□□□□ -0.57
USP54-215ENST00000497106 TMF1P82094 1093 aa11.5□□□□□ -0.57
USP54-215ENST00000497106 IQGAP3Q86VI3 1631 aa11.49□□□□□ -0.57
USP54-215ENST00000497106 DIP2BQ9P265 1576 aa11.48□□□□□ -0.57
USP54-215ENST00000497106 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP54-215ENST00000497106 KDM6BO15054 1643 aa11.48□□□□□ -0.57
USP54-215ENST00000497106 CNTLNQ9NXG0 1405 aa11.48□□□□□ -0.57
USP54-215ENST00000497106 USP47Q96K76 1375 aa11.47□□□□□ -0.57
USP54-215ENST00000497106 KDM5CP41229 1560 aa11.47□□□□□ -0.57
USP54-215ENST00000497106 MAP3K4Q9Y6R4 1608 aa11.46□□□□□ -0.57
USP54-215ENST00000497106 TET3O43151 1660 aa11.44□□□□□ -0.58
USP54-215ENST00000497106 YTHDC1Q96MU7 727 aaKnown RBP11.43□□□□□ -0.58
USP54-215ENST00000497106 EID1Q9Y6B2 187 aa11.43□□□□□ -0.58
USP54-215ENST00000497106 PRDM15P57071 1507 aaPredicted RBP11.42□□□□□ -0.58
USP54-215ENST00000497106 RALGAPBQ86X10 1494 aa11.42□□□□□ -0.58
USP54-215ENST00000497106 UHRF1BP1Q6BDS2 1440 aa11.42□□□□□ -0.58
USP54-215ENST00000497106 LMTK2Q8IWU2 1503 aa11.42□□□□□ -0.58
USP54-215ENST00000497106 HIRIP3Q9BW71 556 aaPredicted RBP11.42□□□□□ -0.58
USP54-215ENST00000497106 ZMYM4Q5VZL5 1548 aa11.41□□□□□ -0.58
USP54-215ENST00000497106 TRPM2O94759 1503 aa11.41□□□□□ -0.58
USP54-215ENST00000497106 CCER2I3L3R5 266 aa11.4□□□□□ -0.58
USP54-215ENST00000497106 DNAJC5Q9H3Z4 198 aa11.4□□□□□ -0.58
USP54-215ENST00000497106 POGKQ9P215 609 aa11.4□□□□□ -0.59
USP54-215ENST00000497106 PTPRTO14522 1441 aa11.4□□□□□ -0.59
USP54-215ENST00000497106 YEATS2Q9ULM3 1422 aa11.39□□□□□ -0.59
USP54-215ENST00000497106 NBPF8Q3BBV2 869 aa11.39□□□□□ -0.59
USP54-215ENST00000497106 ARHGAP31Q2M1Z3 1444 aa11.39□□□□□ -0.59
USP54-215ENST00000497106 PLPPR3Q6T4P5 718 aa11.39□□□□□ -0.59
USP54-215ENST00000497106 MIER1Q8N108 512 aa11.38□□□□□ -0.59
USP54-215ENST00000497106 AGLP35573 1532 aa11.38□□□□□ -0.59
USP54-215ENST00000497106 EFCAB6Q5THR3 1501 aa11.38□□□□□ -0.59
USP54-215ENST00000497106 DIP2CQ9Y2E4 1556 aa11.38□□□□□ -0.59
USP54-215ENST00000497106 TSPOAP1O95153 1857 aa11.38□□□□□ -0.59
USP54-215ENST00000497106 KIDINS220Q9ULH0 1771 aa11.37□□□□□ -0.59
USP54-215ENST00000497106 CCDC7Q96M83 1385 aa11.37□□□□□ -0.59
USP54-215ENST00000497106 PRAG1Q86YV5 1406 aa11.37□□□□□ -0.59
USP54-215ENST00000497106 KNSTRNQ9Y448 316 aa11.37□□□□□ -0.59
USP54-215ENST00000497106 RNF17Q9BXT8 1623 aaKnown RBP11.37□□□□□ -0.59
USP54-215ENST00000497106 ABCC3O15438 1527 aa11.36□□□□□ -0.59
USP54-215ENST00000497106 ST20-MTHFSA0A0A6YYL1 179 aa11.36□□□□□ -0.59
USP54-215ENST00000497106 ZC3H13Q5T200 1668 aaKnown RBP11.36□□□□□ -0.59
USP54-215ENST00000497106 NEFLP07196 543 aa11.35□□□□□ -0.59
USP54-215ENST00000497106 ABCA6Q8N139 1617 aa11.35□□□□□ -0.59
USP54-215ENST00000497106 DEPDC5O75140 1603 aa11.34□□□□□ -0.59
USP54-215ENST00000497106 TNRQ92752 1358 aa11.34□□□□□ -0.59
USP54-215ENST00000497106 NPATQ14207 1427 aa11.34□□□□□ -0.59
USP54-215ENST00000497106 ARHGEF40Q8TER5 1519 aa11.34□□□□□ -0.59
USP54-215ENST00000497106 REREQ9P2R6 1566 aa11.33□□□□□ -0.6
USP54-215ENST00000497106 RALBP1Q15311 655 aa11.33□□□□□ -0.6
USP54-215ENST00000497106 SCAF11Q99590 1463 aaKnown RBP11.33□□□□□ -0.6
USP54-215ENST00000497106 THEMISQ8N1K5 641 aaPredicted RBP11.33□□□□□ -0.6
USP54-215ENST00000497106 CENPJQ9HC77 1338 aaPredicted RBP11.33□□□□□ -0.6
USP54-215ENST00000497106 ERICH6Q7L0X2 663 aa11.32□□□□□ -0.6
USP54-215ENST00000497106 KTN1Q86UP2 1357 aaKnown RBP11.32□□□□□ -0.6
USP54-215ENST00000497106 VWDEQ8N2E2 1590 aa11.32□□□□□ -0.6
USP54-215ENST00000497106 TMC1Q8TDI8 760 aa11.32□□□□□ -0.6
USP54-215ENST00000497106 EVC2Q86UK5 1308 aa11.32□□□□□ -0.6
USP54-215ENST00000497106 MYOM2P54296 1465 aa11.31□□□□□ -0.6
USP54-215ENST00000497106 SPHKAPQ2M3C7 1700 aa11.31□□□□□ -0.6
USP54-215ENST00000497106 IDI1Q13907 227 aa11.31□□□□□ -0.6
USP54-215ENST00000497106 CNGB1Q14028 1251 aaPredicted RBP11.31□□□□□ -0.6
USP54-215ENST00000497106 MRS2Q9HD23 443 aa11.31□□□□□ -0.6
USP54-215ENST00000497106 KIF7Q2M1P5 1343 aa11.31□□□□□ -0.6
USP54-215ENST00000497106 NOS1P29475 1434 aa11.31□□□□□ -0.6
USP54-215ENST00000497106 RICTORQ6R327 1708 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms