RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 IFFO2Q5TF58 517 aa9.88□□□□□ -0.83
CSMD3-208ENST00000497026 RBM33Q96EV2 1170 aaKnown RBP9.88□□□□□ -0.83
CSMD3-208ENST00000497026 NACADO15069 1562 aa9.87□□□□□ -0.83
CSMD3-208ENST00000497026 PHF14O94880 888 aa9.86□□□□□ -0.83
CSMD3-208ENST00000497026 TYW1BQ6NUM6 668 aa9.86□□□□□ -0.83
CSMD3-208ENST00000497026 HRO43593 1189 aa9.85□□□□□ -0.83
CSMD3-208ENST00000497026 PDIA6Q15084 440 aa9.85□□□□□ -0.83
CSMD3-208ENST00000497026 ZCCHC6Q5VYS8 1495 aaKnown RBP9.85□□□□□ -0.83
CSMD3-208ENST00000497026 COL9A1P20849 921 aa9.83□□□□□ -0.84
CSMD3-208ENST00000497026 HAP1P54257 671 aaPredicted RBP9.83□□□□□ -0.84
CSMD3-208ENST00000497026 NBR1Q14596 966 aa9.83□□□□□ -0.84
CSMD3-208ENST00000497026 KCTD12Q96CX2 325 aaKnown RBP9.83□□□□□ -0.84
CSMD3-208ENST00000497026 VPS9D1Q9Y2B5 631 aa9.83□□□□□ -0.84
CSMD3-208ENST00000497026 GRXCR2A6NFK2 248 aa9.82□□□□□ -0.84
CSMD3-208ENST00000497026 SPDYE16A6NNV3 312 aaPredicted RBP9.82□□□□□ -0.84
CSMD3-208ENST00000497026 KCNV2Q8TDN2 545 aa9.82□□□□□ -0.84
CSMD3-208ENST00000497026 EPAS1Q99814 870 aa9.82□□□□□ -0.84
CSMD3-208ENST00000497026 ZBED2Q9BTP6 218 aa9.82□□□□□ -0.84
CSMD3-208ENST00000497026 MYO15BQ96JP2 1530 aa9.81□□□□□ -0.84
CSMD3-208ENST00000497026 FBXW7Q969H0 707 aa9.81□□□□□ -0.84
CSMD3-208ENST00000497026 PROX2Q3B8N5 592 aa9.8□□□□□ -0.84
CSMD3-208ENST00000497026 C6orf132Q5T0Z8 1188 aa9.8□□□□□ -0.84
CSMD3-208ENST00000497026 ARIH1Q9Y4X5 557 aaPredicted RBP9.8□□□□□ -0.84
CSMD3-208ENST00000497026 PRIM1P49642 420 aaKnown RBP9.79□□□□□ -0.84
CSMD3-208ENST00000497026 PPP1R3GB7ZBB8 358 aa9.78□□□□□ -0.84
CSMD3-208ENST00000497026 MAP3K7O43318 606 aa9.78□□□□□ -0.84
CSMD3-208ENST00000497026 TSR1Q2NL82 804 aaKnown RBP9.78□□□□□ -0.84
CSMD3-208ENST00000497026 DCAF1Q9Y4B6 1507 aa9.76□□□□□ -0.85
CSMD3-208ENST00000497026 SLC4A5Q9BY07 1137 aa9.76□□□□□ -0.85
CSMD3-208ENST00000497026 EN1Q05925 392 aaPredicted RBP9.75□□□□□ -0.85
CSMD3-208ENST00000497026 UNC13AQ9UPW8 1703 aa9.75□□□□□ -0.85
CSMD3-208ENST00000497026 A0A0G2JS52 829 aa9.73□□□□□ -0.85
CSMD3-208ENST00000497026 ARHGEF1Q92888 912 aaKnown RBP9.73□□□□□ -0.85
CSMD3-208ENST00000497026 BHMG1C9JSJ3 638 aaPredicted RBP9.73□□□□□ -0.85
CSMD3-208ENST00000497026 MLLT3P42568 568 aaPredicted RBP9.73□□□□□ -0.85
CSMD3-208ENST00000497026 OSBPP22059 807 aa9.72□□□□□ -0.85
CSMD3-208ENST00000497026 PTPN5P54829 565 aa9.72□□□□□ -0.85
CSMD3-208ENST00000497026 MRPL50Q8N5N7 158 aaKnown RBP9.71□□□□□ -0.86
CSMD3-208ENST00000497026 CDHR5Q9HBB8 845 aa9.71□□□□□ -0.86
CSMD3-208ENST00000497026 KIAA1468Q9P260 1216 aa9.71□□□□□ -0.86
CSMD3-208ENST00000497026 GOLGA8CPA6NN73 597 aa9.7□□□□□ -0.86
CSMD3-208ENST00000497026 KDM2AQ9Y2K7 1162 aa9.7□□□□□ -0.86
CSMD3-208ENST00000497026 NBPF3Q9H094 633 aa9.68□□□□□ -0.86
CSMD3-208ENST00000497026 SEPT9Q9UHD8 586 aaPredicted RBP9.68□□□□□ -0.86
CSMD3-208ENST00000497026 RABGEF1Q9UJ41 708 aa9.68□□□□□ -0.86
CSMD3-208ENST00000497026 TRIM6-TRIM34B2RNG4 842 aa9.67□□□□□ -0.86
CSMD3-208ENST00000497026 SEMA3EO15041 775 aa9.66□□□□□ -0.86
CSMD3-208ENST00000497026 P3H3Q8IVL6 736 aa9.66□□□□□ -0.86
CSMD3-208ENST00000497026 WNT2BQ93097 391 aa9.66□□□□□ -0.86
CSMD3-208ENST00000497026 TSKSQ9UJT2 592 aa9.65□□□□□ -0.86
CSMD3-208ENST00000497026 BICRAQ9NZM4 1560 aa9.65□□□□□ -0.86
CSMD3-208ENST00000497026 Q6ZNB5 142 aa9.64□□□□□ -0.87
CSMD3-208ENST00000497026 CDCA7LQ96GN5 454 aa9.64□□□□□ -0.87
CSMD3-208ENST00000497026 FAM198AQ9UFP1 575 aa9.64□□□□□ -0.87
CSMD3-208ENST00000497026 C3orf80F5H4A9 247 aa9.63□□□□□ -0.87
CSMD3-208ENST00000497026 THSD4Q6ZMP0 1018 aa9.63□□□□□ -0.87
CSMD3-208ENST00000497026 SMAPO00193 183 aa9.62□□□□□ -0.87
CSMD3-208ENST00000497026 PRSS12P56730 875 aa9.62□□□□□ -0.87
CSMD3-208ENST00000497026 ONECUT3O60422 494 aaPredicted RBP9.6□□□□□ -0.87
CSMD3-208ENST00000497026 BCAMP50895 628 aa9.6□□□□□ -0.87
CSMD3-208ENST00000497026 PACS2Q86VP3 889 aa9.6□□□□□ -0.87
CSMD3-208ENST00000497026 ZFRQ96KR1 1074 aaKnown RBP9.59□□□□□ -0.87
CSMD3-208ENST00000497026 NPDC1Q9NQX5 325 aaPredicted RBP9.59□□□□□ -0.87
CSMD3-208ENST00000497026 SCRIBQ14160 1630 aa9.59□□□□□ -0.87
CSMD3-208ENST00000497026 LAPTM4AQ15012 233 aa9.58□□□□□ -0.88
CSMD3-208ENST00000497026 ANKK1Q8NFD2 765 aa9.58□□□□□ -0.88
CSMD3-208ENST00000497026 NUTM2FA1L443 756 aa9.57□□□□□ -0.88
CSMD3-208ENST00000497026 CERKQ8TCT0 537 aa9.57□□□□□ -0.88
CSMD3-208ENST00000497026 FAM98CQ17RN3 349 aaKnown RBP9.56□□□□□ -0.88
CSMD3-208ENST00000497026 PADI6Q6TGC4 694 aa9.56□□□□□ -0.88
CSMD3-208ENST00000497026 LAPTM4BQ86VI4 370 aa9.56□□□□□ -0.88
CSMD3-208ENST00000497026 PNMA3Q9UL41 463 aa9.56□□□□□ -0.88
CSMD3-208ENST00000497026 VSIG10Q8N0Z9 540 aa9.56□□□□□ -0.88
CSMD3-208ENST00000497026 NUDT18Q6ZVK8 323 aa9.55□□□□□ -0.88
CSMD3-208ENST00000497026 TATDN2Q93075 761 aa9.55□□□□□ -0.88
CSMD3-208ENST00000497026 TESPA1A2RU30 521 aaPredicted RBP9.53□□□□□ -0.88
CSMD3-208ENST00000497026 SOWAHBA6NEL2 793 aa9.53□□□□□ -0.88
CSMD3-208ENST00000497026 RBM26Q5T8P6 1007 aaKnown RBP9.53□□□□□ -0.88
CSMD3-208ENST00000497026 NBPF26B4DH59 902 aa9.52□□□□□ -0.89
CSMD3-208ENST00000497026 ITGBL1O95965 494 aaPredicted RBP9.51□□□□□ -0.89
CSMD3-208ENST00000497026 PTGDRQ13258 359 aa9.51□□□□□ -0.89
CSMD3-208ENST00000497026 SAMD7Q7Z3H4 446 aa9.51□□□□□ -0.89
CSMD3-208ENST00000497026 WBP1LQ9NX94 342 aa9.51□□□□□ -0.89
CSMD3-208ENST00000497026 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.51□□□□□ -0.89
CSMD3-208ENST00000497026 LRCH3Q96II8 777 aa9.5□□□□□ -0.89
CSMD3-208ENST00000497026 HPS5Q9UPZ3 1129 aa9.5□□□□□ -0.89
CSMD3-208ENST00000497026 SHROOM4Q9ULL8 1493 aa9.5□□□□□ -0.89
CSMD3-208ENST00000497026 FAM161AQ3B820 660 aa9.49□□□□□ -0.89
CSMD3-208ENST00000497026 TTC13Q8NBP0 860 aa9.49□□□□□ -0.89
CSMD3-208ENST00000497026 RBM27Q9P2N5 1060 aaKnown RBP9.49□□□□□ -0.89
CSMD3-208ENST00000497026 RNF40O75150 1001 aa9.47□□□□□ -0.89
CSMD3-208ENST00000497026 SMYD5Q6GMV2 418 aa9.46□□□□□ -0.9
CSMD3-208ENST00000497026 NYAP1Q6ZVC0 841 aa9.46□□□□□ -0.9
CSMD3-208ENST00000497026 FCHSD2O94868 740 aa9.45□□□□□ -0.9
CSMD3-208ENST00000497026 TSR3Q9UJK0 312 aaKnown RBP9.45□□□□□ -0.9
CSMD3-208ENST00000497026 TRAF7Q6Q0C0 670 aa9.44□□□□□ -0.9
CSMD3-208ENST00000497026 PPP4CP60510 307 aa9.43□□□□□ -0.9
CSMD3-208ENST00000497026 SWT1Q5T5J6 900 aaKnown RBP9.43□□□□□ -0.9
CSMD3-208ENST00000497026 EYA1Q99502 592 aa9.43□□□□□ -0.9
CSMD3-208ENST00000497026 FECHP22830 423 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms