RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 KCNH8Q96L42 1107 aa14.35□□□□□ -0.11
SF3B1-212ENST00000496458 MAP3K7O43318 606 aa14.34□□□□□ -0.11
SF3B1-212ENST00000496458 OSBPP22059 807 aa14.34□□□□□ -0.11
SF3B1-212ENST00000496458 PRIM1P49642 420 aaKnown RBP14.34□□□□□ -0.11
SF3B1-212ENST00000496458 TESPA1A2RU30 521 aaPredicted RBP14.33□□□□□ -0.12
SF3B1-212ENST00000496458 LSM11P83369 360 aaKnown RBP eCLIP14.31□□□□□ -0.121e-7■□□□□ 9.1
SF3B1-212ENST00000496458 DMRTA1Q5VZB9 504 aa14.31□□□□□ -0.12
SF3B1-212ENST00000496458 TSR1Q2NL82 804 aaKnown RBP14.3□□□□□ -0.12
SF3B1-212ENST00000496458 C6orf132Q5T0Z8 1188 aa14.3□□□□□ -0.12
SF3B1-212ENST00000496458 ANKRD13DQ6ZTN6 518 aa14.29□□□□□ -0.12
SF3B1-212ENST00000496458 PPP1R3GB7ZBB8 358 aa14.25□□□□□ -0.13
SF3B1-212ENST00000496458 COL9A1P20849 921 aa14.25□□□□□ -0.13
SF3B1-212ENST00000496458 SMYD5Q6GMV2 418 aa14.25□□□□□ -0.13
SF3B1-212ENST00000496458 CDHR5Q9HBB8 845 aa14.24□□□□□ -0.13
SF3B1-212ENST00000496458 RBM26Q5T8P6 1007 aaKnown RBP14.2□□□□□ -0.14
SF3B1-212ENST00000496458 ADGRD1Q6QNK2 874 aa14.2□□□□□ -0.14
SF3B1-212ENST00000496458 ZBED2Q9BTP6 218 aa14.2□□□□□ -0.14
SF3B1-212ENST00000496458 TK2O00142 265 aa14.18□□□□□ -0.14
SF3B1-212ENST00000496458 NUTM2FA1L443 756 aa14.17□□□□□ -0.14
SF3B1-212ENST00000496458 PROX2Q3B8N5 592 aa14.17□□□□□ -0.14
SF3B1-212ENST00000496458 VPS9D1Q9Y2B5 631 aa14.17□□□□□ -0.14
SF3B1-212ENST00000496458 TULP1O00294 542 aaPredicted RBP14.16□□□□□ -0.14
SF3B1-212ENST00000496458 SLC4A5Q9BY07 1137 aa14.16□□□□□ -0.14
SF3B1-212ENST00000496458 SPNS2Q8IVW8 549 aa14.15□□□□□ -0.14
SF3B1-212ENST00000496458 CERKQ8TCT0 537 aa14.14□□□□□ -0.15
SF3B1-212ENST00000496458 NPDC1Q9NQX5 325 aaPredicted RBP14.12□□□□□ -0.15
SF3B1-212ENST00000496458 TRIM6-TRIM34B2RNG4 842 aa14.1□□□□□ -0.15
SF3B1-212ENST00000496458 HRO43593 1189 aa14.1□□□□□ -0.15
SF3B1-212ENST00000496458 CDCA7LQ96GN5 454 aa14.1□□□□□ -0.15
SF3B1-212ENST00000496458 PRSS12P56730 875 aa14.09□□□□□ -0.15
SF3B1-212ENST00000496458 PTGDRQ13258 359 aa14.09□□□□□ -0.15
SF3B1-212ENST00000496458 GPIHBP1Q8IV16 184 aa14.07□□□□□ -0.16
SF3B1-212ENST00000496458 TSKSQ9UJT2 592 aa14.07□□□□□ -0.16
SF3B1-212ENST00000496458 FCHSD2O94868 740 aa14.06□□□□□ -0.16
SF3B1-212ENST00000496458 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.06□□□□□ -0.16
SF3B1-212ENST00000496458 BCANQ96GW7 911 aa14.06□□□□□ -0.16
SF3B1-212ENST00000496458 KIAA1468Q9P260 1216 aa14.06□□□□□ -0.16
SF3B1-212ENST00000496458 RABGEF1Q9UJ41 708 aa14.06□□□□□ -0.16
SF3B1-212ENST00000496458 PADI6Q6TGC4 694 aa14.05□□□□□ -0.16
SF3B1-212ENST00000496458 STAC3Q96MF2 364 aa14.05□□□□□ -0.16
SF3B1-212ENST00000496458 ONECUT3O60422 494 aaPredicted RBP14.04□□□□□ -0.16
SF3B1-212ENST00000496458 LMOD2Q6P5Q4 547 aa14.04□□□□□ -0.16
SF3B1-212ENST00000496458 NBPF3Q9H094 633 aa14.04□□□□□ -0.16
SF3B1-212ENST00000496458 PLSCR2Q9NRY7 297 aa14.04□□□□□ -0.16
SF3B1-212ENST00000496458 FAM198AQ9UFP1 575 aa14.04□□□□□ -0.16
SF3B1-212ENST00000496458 BHMG1C9JSJ3 638 aaPredicted RBP14.03□□□□□ -0.16
SF3B1-212ENST00000496458 RBM27Q9P2N5 1060 aaKnown RBP14.03□□□□□ -0.16
SF3B1-212ENST00000496458 MYT1LQ9UL68 1186 aa14.03□□□□□ -0.16
SF3B1-212ENST00000496458 MMRN1Q13201 1228 aa14.02□□□□□ -0.17
SF3B1-212ENST00000496458 PACS2Q86VP3 889 aa14.02□□□□□ -0.17
SF3B1-212ENST00000496458 GPR37O15354 613 aa14.01□□□□□ -0.17
SF3B1-212ENST00000496458 MRPL50Q8N5N7 158 aaKnown RBP14.01□□□□□ -0.17
SF3B1-212ENST00000496458 SEPT9Q9UHD8 586 aaPredicted RBP14□□□□□ -0.17
SF3B1-212ENST00000496458 HIC1Q14526 733 aa13.99□□□□□ -0.17
SF3B1-212ENST00000496458 TTC13Q8NBP0 860 aa13.98□□□□□ -0.17
SF3B1-212ENST00000496458 NBPF26B4DH59 902 aa13.96□□□□□ -0.17
SF3B1-212ENST00000496458 C3orf80F5H4A9 247 aa13.96□□□□□ -0.17
SF3B1-212ENST00000496458 SMAPO00193 183 aa13.96□□□□□ -0.17
SF3B1-212ENST00000496458 GNPATO15228 680 aa13.96□□□□□ -0.17
SF3B1-212ENST00000496458 RNF166Q96A37 237 aaPredicted RBP13.96□□□□□ -0.17
SF3B1-212ENST00000496458 PNMA3Q9UL41 463 aa13.96□□□□□ -0.17
SF3B1-212ENST00000496458 TATDN2Q93075 761 aa13.95□□□□□ -0.18
SF3B1-212ENST00000496458 GOLGA8CPA6NN73 597 aa13.94□□□□□ -0.18
SF3B1-212ENST00000496458 NUDT18Q6ZVK8 323 aa13.94□□□□□ -0.18
SF3B1-212ENST00000496458 FECHP22830 423 aa13.93□□□□□ -0.18
SF3B1-212ENST00000496458 LAPTM4BQ86VI4 370 aa13.93□□□□□ -0.18
SF3B1-212ENST00000496458 FAM98CQ17RN3 349 aaKnown RBP13.91□□□□□ -0.18
SF3B1-212ENST00000496458 KCTD12Q96CX2 325 aaKnown RBP13.91□□□□□ -0.18
SF3B1-212ENST00000496458 FAM161AQ3B820 660 aa13.9□□□□□ -0.18
SF3B1-212ENST00000496458 WNT2BQ93097 391 aa13.88□□□□□ -0.19
SF3B1-212ENST00000496458 ZFRQ96KR1 1074 aaKnown RBP13.88□□□□□ -0.19
SF3B1-212ENST00000496458 ADGRG1Q9Y653 693 aa13.88□□□□□ -0.19
SF3B1-212ENST00000496458 ANKK1Q8NFD2 765 aa13.85□□□□□ -0.19
SF3B1-212ENST00000496458 ZC3H15Q8WU90 426 aaKnown RBP13.85□□□□□ -0.19
SF3B1-212ENST00000496458 RBM46Q8TBY0 533 aaKnown RBP13.84□□□□□ -0.19
SF3B1-212ENST00000496458 EYA1Q99502 592 aa13.84□□□□□ -0.19
SF3B1-212ENST00000496458 MAP2K5Q13163 448 aa13.81□□□□□ -0.2
SF3B1-212ENST00000496458 THSD4Q6ZMP0 1018 aa13.81□□□□□ -0.2
SF3B1-212ENST00000496458 OATP04181 439 aa13.8□□□□□ -0.2
SF3B1-212ENST00000496458 BCAMP50895 628 aa13.8□□□□□ -0.2
SF3B1-212ENST00000496458 SAMD7Q7Z3H4 446 aa13.79□□□□□ -0.2
SF3B1-212ENST00000496458 LRCH3Q96II8 777 aa13.79□□□□□ -0.2
SF3B1-212ENST00000496458 ZMYND10O75800 440 aa13.78□□□□□ -0.2
SF3B1-212ENST00000496458 METTL3Q86U44 580 aaKnown RBP13.78□□□□□ -0.2
SF3B1-212ENST00000496458 PXYLP1Q8TE99 480 aa13.78□□□□□ -0.2
SF3B1-212ENST00000496458 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.78□□□□□ -0.2
SF3B1-212ENST00000496458 SOWAHBA6NEL2 793 aa13.77□□□□□ -0.21
SF3B1-212ENST00000496458 PTPN5P54829 565 aa13.77□□□□□ -0.21
SF3B1-212ENST00000496458 RCCD1A6NED2 376 aa13.76□□□□□ -0.21
SF3B1-212ENST00000496458 DNAJB2P25686 324 aa13.76□□□□□ -0.21
SF3B1-212ENST00000496458 MINK1Q8N4C8 1332 aaPredicted RBP13.75□□□□□ -0.21
SF3B1-212ENST00000496458 HDGFP51858 240 aaKnown RBP13.75□□□□□ -0.21
SF3B1-212ENST00000496458 SWT1Q5T5J6 900 aaKnown RBP13.75□□□□□ -0.21
SF3B1-212ENST00000496458 BARGINQ6ZT62 677 aa13.75□□□□□ -0.21
SF3B1-212ENST00000496458 IRF6O14896 467 aa13.74□□□□□ -0.21
SF3B1-212ENST00000496458 KRI1Q8N9T8 703 aaKnown RBP13.74□□□□□ -0.21
SF3B1-212ENST00000496458 HCSTQ9UBK5 93 aa13.74□□□□□ -0.21
SF3B1-212ENST00000496458 RNF40O75150 1001 aa13.73□□□□□ -0.21
SF3B1-212ENST00000496458 CCDC102AQ96A19 550 aa13.73□□□□□ -0.21
SF3B1-212ENST00000496458 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms