RNA–Protein interactions for RNA: ENST00000496205.1

CLK1-214, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 480 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-214ENST00000496205 FBXW7Q969H0 707 aa10.84□□□□□ -0.67
CLK1-214ENST00000496205 RGS20O76081 388 aa10.83□□□□□ -0.68
CLK1-214ENST00000496205 CAMK2BQ13554 666 aa10.83□□□□□ -0.68
CLK1-214ENST00000496205 BCAMP50895 628 aa10.82□□□□□ -0.68
CLK1-214ENST00000496205 KIAA1468Q9P260 1216 aa10.82□□□□□ -0.68
CLK1-214ENST00000496205 DPYSL4O14531 572 aa10.81□□□□□ -0.68
CLK1-214ENST00000496205 ANKK1Q8NFD2 765 aa10.81□□□□□ -0.68
CLK1-214ENST00000496205 C6orf132Q5T0Z8 1188 aa10.8□□□□□ -0.68
CLK1-214ENST00000496205 SOWAHBA6NEL2 793 aa10.78□□□□□ -0.68
CLK1-214ENST00000496205 LAPTM4BQ86VI4 370 aa10.78□□□□□ -0.68
CLK1-214ENST00000496205 ZFRQ96KR1 1074 aaKnown RBP10.78□□□□□ -0.68
CLK1-214ENST00000496205 EPAS1Q99814 870 aa10.77□□□□□ -0.69
CLK1-214ENST00000496205 SEPT9Q9UHD8 586 aaPredicted RBP10.77□□□□□ -0.69
CLK1-214ENST00000496205 ITGBL1O95965 494 aaPredicted RBP10.76□□□□□ -0.69
CLK1-214ENST00000496205 IRX2Q9BZI1 471 aaPredicted RBP10.76□□□□□ -0.69
CLK1-214ENST00000496205 ONECUT3O60422 494 aaPredicted RBP10.75□□□□□ -0.69
CLK1-214ENST00000496205 DDX12PQ92771 950 aa10.75□□□□□ -0.69
CLK1-214ENST00000496205 RBM33Q96EV2 1170 aaKnown RBP10.75□□□□□ -0.69
CLK1-214ENST00000496205 WBP1LQ9NX94 342 aa10.75□□□□□ -0.69
CLK1-214ENST00000496205 TRIM6-TRIM34B2RNG4 842 aa10.73□□□□□ -0.69
CLK1-214ENST00000496205 FAM98CQ17RN3 349 aaKnown RBP10.68□□□□□ -0.7
CLK1-214ENST00000496205 TSR1Q2NL82 804 aaKnown RBP10.68□□□□□ -0.7
CLK1-214ENST00000496205 NYAP1Q6ZVC0 841 aa10.67□□□□□ -0.7
CLK1-214ENST00000496205 TSKSQ9UJT2 592 aa10.67□□□□□ -0.7
CLK1-214ENST00000496205 KCNC4Q03721 635 aa10.65□□□□□ -0.7
CLK1-214ENST00000496205 EN1Q05925 392 aaPredicted RBP10.65□□□□□ -0.7
CLK1-214ENST00000496205 NBR1Q14596 966 aa10.65□□□□□ -0.7
CLK1-214ENST00000496205 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.65□□□□□ -0.7
CLK1-214ENST00000496205 HPS5Q9UPZ3 1129 aa10.65□□□□□ -0.7
CLK1-214ENST00000496205 PDIA6Q15084 440 aa10.64□□□□□ -0.71
CLK1-214ENST00000496205 TSR3Q9UJK0 312 aaKnown RBP10.64□□□□□ -0.71
CLK1-214ENST00000496205 MAP3K7O43318 606 aa10.63□□□□□ -0.71
CLK1-214ENST00000496205 BBXQ8WY36 941 aaPredicted RBP10.63□□□□□ -0.71
CLK1-214ENST00000496205 LRCH3Q96II8 777 aa10.63□□□□□ -0.71
CLK1-214ENST00000496205 PRIM1P49642 420 aaKnown RBP10.62□□□□□ -0.71
CLK1-214ENST00000496205 PACS2Q86VP3 889 aa10.61□□□□□ -0.71
CLK1-214ENST00000496205 FAM198AQ9UFP1 575 aa10.61□□□□□ -0.71
CLK1-214ENST00000496205 C3orf80F5H4A9 247 aa10.6□□□□□ -0.71
CLK1-214ENST00000496205 SMAPO00193 183 aa10.6□□□□□ -0.71
CLK1-214ENST00000496205 CDCA7LQ96GN5 454 aa10.58□□□□□ -0.72
CLK1-214ENST00000496205 SPDYE16A6NNV3 312 aaPredicted RBP10.57□□□□□ -0.72
CLK1-214ENST00000496205 PRSS12P56730 875 aa10.56□□□□□ -0.72
CLK1-214ENST00000496205 SAMD7Q7Z3H4 446 aa10.56□□□□□ -0.72
CLK1-214ENST00000496205 PPP4CP60510 307 aa10.55□□□□□ -0.72
CLK1-214ENST00000496205 GRXCR2A6NFK2 248 aa10.54□□□□□ -0.72
CLK1-214ENST00000496205 TJAP1Q5JTD0 557 aa10.54□□□□□ -0.72
CLK1-214ENST00000496205 SPRYD3Q8NCJ5 442 aa10.54□□□□□ -0.72
CLK1-214ENST00000496205 E2F4Q16254 413 aa10.53□□□□□ -0.72
CLK1-214ENST00000496205 Q6ZNB5 142 aa10.53□□□□□ -0.72
CLK1-214ENST00000496205 TATDN2Q93075 761 aa10.51□□□□□ -0.73
CLK1-214ENST00000496205 CDHR5Q9HBB8 845 aa10.51□□□□□ -0.73
CLK1-214ENST00000496205 ARIH1Q9Y4X5 557 aaPredicted RBP10.51□□□□□ -0.73
CLK1-214ENST00000496205 OSBPP22059 807 aa10.5□□□□□ -0.73
CLK1-214ENST00000496205 PNMA3Q9UL41 463 aa10.5□□□□□ -0.73
CLK1-214ENST00000496205 CERKQ8TCT0 537 aa10.49□□□□□ -0.73
CLK1-214ENST00000496205 LCE2BO14633 110 aa10.48□□□□□ -0.73
CLK1-214ENST00000496205 MTRQ99707 1265 aa10.47□□□□□ -0.73
CLK1-214ENST00000496205 NUDT18Q6ZVK8 323 aa10.46□□□□□ -0.73
CLK1-214ENST00000496205 ZNF516Q92618 1163 aa10.46□□□□□ -0.73
CLK1-214ENST00000496205 NBPF26B4DH59 902 aa10.45□□□□□ -0.74
CLK1-214ENST00000496205 PPP1R18Q6NYC8 613 aa10.44□□□□□ -0.74
CLK1-214ENST00000496205 IL21Q9HBE4 155 aa10.44□□□□□ -0.74
CLK1-214ENST00000496205 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.44□□□□□ -0.74
CLK1-214ENST00000496205 GFRA3O60609 400 aa10.43□□□□□ -0.74
CLK1-214ENST00000496205 APLP1P51693 650 aa10.43□□□□□ -0.74
CLK1-214ENST00000496205 PRKD2Q9BZL6 878 aa10.43□□□□□ -0.74
CLK1-214ENST00000496205 WDR70Q9NW82 654 aa10.43□□□□□ -0.74
CLK1-214ENST00000496205 PAXIP1Q6ZW49 1069 aaPredicted RBP10.42□□□□□ -0.74
CLK1-214ENST00000496205 CFAP44Q96MT7 982 aa10.42□□□□□ -0.74
CLK1-214ENST00000496205 NPDC1Q9NQX5 325 aaPredicted RBP10.42□□□□□ -0.74
CLK1-214ENST00000496205 RNF40O75150 1001 aa10.41□□□□□ -0.74
CLK1-214ENST00000496205 TTC13Q8NBP0 860 aa10.41□□□□□ -0.74
CLK1-214ENST00000496205 NKX2-3Q8TAU0 364 aa10.41□□□□□ -0.74
CLK1-214ENST00000496205 LAPTM4AQ15012 233 aa10.4□□□□□ -0.74
CLK1-214ENST00000496205 RBM27Q9P2N5 1060 aaKnown RBP10.4□□□□□ -0.74
CLK1-214ENST00000496205 SWT1Q5T5J6 900 aaKnown RBP10.38□□□□□ -0.75
CLK1-214ENST00000496205 TRAF7Q6Q0C0 670 aa10.38□□□□□ -0.75
CLK1-214ENST00000496205 PADI6Q6TGC4 694 aa10.38□□□□□ -0.75
CLK1-214ENST00000496205 HDGFP51858 240 aaKnown RBP10.37□□□□□ -0.75
CLK1-214ENST00000496205 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.37□□□□□ -0.75
CLK1-214ENST00000496205 COPS2P61201 443 aa10.34□□□□□ -0.75
CLK1-214ENST00000496205 V9GY48 417 aaPredicted RBP10.34□□□□□ -0.75
CLK1-214ENST00000496205 NRG2O14511 850 aaPredicted RBP10.33□□□□□ -0.76
CLK1-214ENST00000496205 EYA1Q99502 592 aa10.33□□□□□ -0.76
CLK1-214ENST00000496205 SLF2Q8IX21 1173 aa10.3□□□□□ -0.76
CLK1-214ENST00000496205 MLLT3P42568 568 aaPredicted RBP10.29□□□□□ -0.76
CLK1-214ENST00000496205 RTN4Q9NQC3 1192 aaKnown RBP10.29□□□□□ -0.76
CLK1-214ENST00000496205 ZPR1O75312 459 aa10.27□□□□□ -0.77
CLK1-214ENST00000496205 NECTIN2Q92692 538 aa10.26□□□□□ -0.77
CLK1-214ENST00000496205 PDZRN3Q9UPQ7 1066 aa10.26□□□□□ -0.77
CLK1-214ENST00000496205 AMER1Q5JTC6 1135 aaPredicted RBP10.25□□□□□ -0.77
CLK1-214ENST00000496205 GGCXP38435 758 aa10.23□□□□□ -0.77
CLK1-214ENST00000496205 BLOC1S3Q6QNY0 202 aa10.23□□□□□ -0.77
CLK1-214ENST00000496205 EMID1Q96A84 441 aaPredicted RBP10.23□□□□□ -0.77
CLK1-214ENST00000496205 TMUB1Q9BVT8 246 aa10.23□□□□□ -0.77
CLK1-214ENST00000496205 PCDHB3Q9Y5E6 796 aa10.23□□□□□ -0.77
CLK1-214ENST00000496205 PTGDRQ13258 359 aa10.22□□□□□ -0.77
CLK1-214ENST00000496205 TRIM67Q6ZTA4 783 aa10.21□□□□□ -0.77
CLK1-214ENST00000496205 RNF223E7ERA6 249 aa10.2□□□□□ -0.78
CLK1-214ENST00000496205 KCNV2Q8TDN2 545 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 238.2 ms