RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 NCOA1Q15788 1441 aa19.79■□□□□ 0.76
PTPRF-214ENST00000496043 PKD2Q13563 968 aa19.79■□□□□ 0.76
PTPRF-214ENST00000496043 RRP7BPQ9NSQ0 103 aa19.79■□□□□ 0.76
PTPRF-214ENST00000496043 ABCC5O15440 1437 aa19.76■□□□□ 0.75
PTPRF-214ENST00000496043 FAM135AQ9P2D6 1515 aa19.76■□□□□ 0.75
PTPRF-214ENST00000496043 TNRQ92752 1358 aa19.76■□□□□ 0.75
PTPRF-214ENST00000496043 CAMSAP1Q5T5Y3 1602 aa19.76■□□□□ 0.75
PTPRF-214ENST00000496043 KDM5DQ9BY66 1539 aa19.76■□□□□ 0.75
PTPRF-214ENST00000496043 FGD6Q6ZV73 1430 aa19.76■□□□□ 0.75
PTPRF-214ENST00000496043 CHIC2Q9UKJ5 165 aa19.74■□□□□ 0.75
PTPRF-214ENST00000496043 PZPP20742 1482 aa19.73■□□□□ 0.75
PTPRF-214ENST00000496043 PTPN23Q9H3S7 1636 aa19.73■□□□□ 0.75
PTPRF-214ENST00000496043 A2ML1A8K2U0 1454 aa19.73■□□□□ 0.75
PTPRF-214ENST00000496043 KIF15Q9NS87 1388 aa19.72■□□□□ 0.75
PTPRF-214ENST00000496043 DUOX2Q9NRD8 1548 aa19.72■□□□□ 0.75
PTPRF-214ENST00000496043 DAPK1P53355 1430 aa19.72■□□□□ 0.75
PTPRF-214ENST00000496043 FAM50AQ14320 339 aaKnown RBP19.72■□□□□ 0.75
PTPRF-214ENST00000496043 THEMISQ8N1K5 641 aaPredicted RBP19.72■□□□□ 0.75
PTPRF-214ENST00000496043 TCOF1Q13428 1488 aaKnown RBP19.72■□□□□ 0.75
PTPRF-214ENST00000496043 CEP170BQ9Y4F5 1589 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-214ENST00000496043 PLA2R1Q13018 1463 aa19.71■□□□□ 0.75
PTPRF-214ENST00000496043 SHANK2Q9UPX8 1470 aa19.7■□□□□ 0.74
PTPRF-214ENST00000496043 ANKRD30AQ9BXX3 1397 aa19.7■□□□□ 0.74
PTPRF-214ENST00000496043 MYO3AQ8NEV4 1616 aa19.69■□□□□ 0.74
PTPRF-214ENST00000496043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.74
PTPRF-214ENST00000496043 EIF2AK4Q9P2K8 1649 aaKnown RBP19.67■□□□□ 0.74
PTPRF-214ENST00000496043 ANKLE2Q86XL3 938 aa19.67■□□□□ 0.74
PTPRF-214ENST00000496043 ZNF142P52746 1687 aaPredicted RBP19.67■□□□□ 0.74
PTPRF-214ENST00000496043 RNF17Q9BXT8 1623 aaKnown RBP19.66■□□□□ 0.74
PTPRF-214ENST00000496043 ERBINQ96RT1 1412 aa19.66■□□□□ 0.74
PTPRF-214ENST00000496043 ABCC3O15438 1527 aa19.66■□□□□ 0.74
PTPRF-214ENST00000496043 NLRP1Q9C000 1473 aa19.65■□□□□ 0.74
PTPRF-214ENST00000496043 DNMT1P26358 1616 aaKnown RBP19.65■□□□□ 0.74
PTPRF-214ENST00000496043 KANK1Q14678 1352 aa19.64■□□□□ 0.73
PTPRF-214ENST00000496043 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.63■□□□□ 0.739e-9■□□□□ 9
PTPRF-214ENST00000496043 ZNF335Q9H4Z2 1342 aaPredicted RBP19.63■□□□□ 0.73
PTPRF-214ENST00000496043 LTBP4Q8N2S1 1624 aa19.61■□□□□ 0.73
PTPRF-214ENST00000496043 CROCC2H7BZ55 1655 aa19.59■□□□□ 0.73
PTPRF-214ENST00000496043 ZC3H13Q5T200 1668 aaKnown RBP19.59■□□□□ 0.73
PTPRF-214ENST00000496043 MROH1Q8NDA8 1641 aa19.59■□□□□ 0.73
PTPRF-214ENST00000496043 ERVK-7P63135 1459 aa19.59■□□□□ 0.73
PTPRF-214ENST00000496043 ARHGAP31Q2M1Z3 1444 aa19.59■□□□□ 0.73
PTPRF-214ENST00000496043 UGGT1Q9NYU2 1555 aa19.58■□□□□ 0.73
PTPRF-214ENST00000496043 SPATA31D1Q6ZQQ2 1576 aa19.57■□□□□ 0.72
PTPRF-214ENST00000496043 PPARGC1BQ86YN6 1023 aaKnown RBP19.57■□□□□ 0.72
PTPRF-214ENST00000496043 ADGRL2O95490 1459 aa19.55■□□□□ 0.72
PTPRF-214ENST00000496043 IQSEC2Q5JU85 1478 aa19.55■□□□□ 0.72
PTPRF-214ENST00000496043 PRDM15P57071 1507 aaPredicted RBP19.54■□□□□ 0.72
PTPRF-214ENST00000496043 CEP152O94986 1710 aa19.53■□□□□ 0.72
PTPRF-214ENST00000496043 STAG3Q9UJ98 1225 aa19.52■□□□□ 0.72
PTPRF-214ENST00000496043 CFAP65Q6ZU64 1925 aaKnown RBP19.52■□□□□ 0.72
PTPRF-214ENST00000496043 NPHP4O75161 1426 aaPredicted RBP19.51■□□□□ 0.71
PTPRF-214ENST00000496043 ANKRD50Q9ULJ7 1429 aa19.51■□□□□ 0.71
PTPRF-214ENST00000496043 UBAP1LF5GYI3 381 aa19.5■□□□□ 0.71
PTPRF-214ENST00000496043 TXNDC2Q86VQ3 553 aa19.5■□□□□ 0.71
PTPRF-214ENST00000496043 MED14O60244 1454 aa19.49■□□□□ 0.71
PTPRF-214ENST00000496043 ITGAEP38570 1179 aa19.49■□□□□ 0.71
PTPRF-214ENST00000496043 IDI1Q13907 227 aa19.49■□□□□ 0.71
PTPRF-214ENST00000496043 EID1Q9Y6B2 187 aa19.49■□□□□ 0.71
PTPRF-214ENST00000496043 DEPDC5O75140 1603 aa19.49■□□□□ 0.71
PTPRF-214ENST00000496043 LMTK2Q8IWU2 1503 aa19.48■□□□□ 0.71
PTPRF-214ENST00000496043 NEURL4Q96JN8 1562 aa19.48■□□□□ 0.71
PTPRF-214ENST00000496043 ROCK1Q13464 1354 aa19.46■□□□□ 0.71
PTPRF-214ENST00000496043 LTKP29376 864 aa19.46■□□□□ 0.71
PTPRF-214ENST00000496043 SLC52A1Q9NWF4 448 aa19.46■□□□□ 0.71
PTPRF-214ENST00000496043 POLR1AO95602 1720 aaPredicted RBP19.45■□□□□ 0.7
PTPRF-214ENST00000496043 VWDEQ8N2E2 1590 aa19.45■□□□□ 0.7
PTPRF-214ENST00000496043 CPS1P31327 1500 aa19.42■□□□□ 0.7
PTPRF-214ENST00000496043 TOM1O60784 492 aa19.42■□□□□ 0.7
PTPRF-214ENST00000496043 NOS1P29475 1434 aa19.42■□□□□ 0.7
PTPRF-214ENST00000496043 TMEM2Q9UHN6 1383 aa19.41■□□□□ 0.7
PTPRF-214ENST00000496043 SCAF11Q99590 1463 aaKnown RBP19.41■□□□□ 0.7
PTPRF-214ENST00000496043 UBR1Q8IWV7 1749 aa19.4■□□□□ 0.7
PTPRF-214ENST00000496043 ARHGAP23Q9P227 1491 aa19.4■□□□□ 0.7
PTPRF-214ENST00000496043 SLIT1O75093 1534 aa19.39■□□□□ 0.69
PTPRF-214ENST00000496043 IQGAP1P46940 1657 aa19.37■□□□□ 0.69
PTPRF-214ENST00000496043 EFCAB6Q5THR3 1501 aa19.37■□□□□ 0.69
PTPRF-214ENST00000496043 RPRD2Q5VT52 1461 aaKnown RBP19.37■□□□□ 0.69
PTPRF-214ENST00000496043 HDGFP51858 240 aaKnown RBP19.37■□□□□ 0.69
PTPRF-214ENST00000496043 NUP155O75694 1391 aa19.36■□□□□ 0.69
PTPRF-214ENST00000496043 PIP4K2BP78356 416 aa19.36■□□□□ 0.69
PTPRF-214ENST00000496043 PIK3C2BO00750 1634 aa19.36■□□□□ 0.69
PTPRF-214ENST00000496043 SCAF1Q9H7N4 1312 aaKnown RBP19.35■□□□□ 0.69
PTPRF-214ENST00000496043 BCANQ96GW7 911 aa19.34■□□□□ 0.69
PTPRF-214ENST00000496043 SYNMO15061 1565 aa19.33■□□□□ 0.69
PTPRF-214ENST00000496043 CHGAP10645 457 aaKnown RBP19.32■□□□□ 0.68
PTPRF-214ENST00000496043 SLC26A8Q96RN1 970 aa19.31■□□□□ 0.68
PTPRF-214ENST00000496043 RRBP1Q9P2E9 1410 aaKnown RBP19.3■□□□□ 0.68
PTPRF-214ENST00000496043 TET3O43151 1660 aa19.3■□□□□ 0.68
PTPRF-214ENST00000496043 KDM5AP29375 1690 aaKnown RBP19.3■□□□□ 0.68
PTPRF-214ENST00000496043 UNC13BO14795 1591 aa19.29■□□□□ 0.68
PTPRF-214ENST00000496043 KCNA6P17658 529 aa19.29■□□□□ 0.68
PTPRF-214ENST00000496043 LRRC7Q96NW7 1537 aa19.29■□□□□ 0.68
PTPRF-214ENST00000496043 DISP3Q9P2K9 1392 aa19.29■□□□□ 0.68
PTPRF-214ENST00000496043 PPP1R15AO75807 674 aaPredicted RBP19.28■□□□□ 0.68
PTPRF-214ENST00000496043 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.28■□□□□ 0.68
PTPRF-214ENST00000496043 ADGRB3O60242 1522 aa19.26■□□□□ 0.67
PTPRF-214ENST00000496043 HSPA1LP34931 641 aa19.26■□□□□ 0.67
PTPRF-214ENST00000496043 PROSER2Q86WR7 435 aaPredicted RBP19.25■□□□□ 0.67
PTPRF-214ENST00000496043 GCC2Q8IWJ2 1684 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 175.5 ms