RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
SDF4-207ENST00000494748 NPM2Q86SE8 214 aaKnown RBP20.48■□□□□ 0.87
SDF4-207ENST00000494748 WASHC2CQ9Y4E1 1318 aa20.47■□□□□ 0.87
SDF4-207ENST00000494748 ANO8Q9HCE9 1232 aaPredicted RBP20.47■□□□□ 0.87
SDF4-207ENST00000494748 ZMYM4Q5VZL5 1548 aa20.46■□□□□ 0.87
SDF4-207ENST00000494748 BLMP54132 1417 aaPredicted RBP20.46■□□□□ 0.87
SDF4-207ENST00000494748 PRKCSHP14314 528 aaPredicted RBP20.45■□□□□ 0.86
SDF4-207ENST00000494748 USP35Q9P2H5 1018 aa20.45■□□□□ 0.86
SDF4-207ENST00000494748 PLB1Q6P1J6 1458 aa20.45■□□□□ 0.86
SDF4-207ENST00000494748 PDE3BQ13370 1112 aa20.45■□□□□ 0.86
SDF4-207ENST00000494748 LAS1LQ9Y4W2 734 aaKnown RBP20.45■□□□□ 0.86
SDF4-207ENST00000494748 CDCA7LQ96GN5 454 aa20.44■□□□□ 0.86
SDF4-207ENST00000494748 PER1O15534 1290 aaPredicted RBP20.43■□□□□ 0.86
SDF4-207ENST00000494748 LAMC1P11047 1609 aa20.43■□□□□ 0.86
SDF4-207ENST00000494748 GRIN2AQ12879 1464 aa20.43■□□□□ 0.86
SDF4-207ENST00000494748 NEFMP07197 916 aa20.43■□□□□ 0.86
SDF4-207ENST00000494748 NLRP13Q86W25 1043 aa20.43■□□□□ 0.86
SDF4-207ENST00000494748 INSRP06213 1382 aa20.42■□□□□ 0.86
SDF4-207ENST00000494748 ABCC10Q5T3U5 1492 aa20.42■□□□□ 0.86
SDF4-207ENST00000494748 NUP155O75694 1391 aa20.42■□□□□ 0.86
SDF4-207ENST00000494748 SALL2Q9Y467 1007 aaPredicted RBP20.41■□□□□ 0.86
SDF4-207ENST00000494748 C9orf84Q5VXU9 1444 aa20.41■□□□□ 0.86
SDF4-207ENST00000494748 SKAP1Q86WV1 359 aa20.41■□□□□ 0.86
SDF4-207ENST00000494748 EIF4G3O43432 1585 aaKnown RBP20.41■□□□□ 0.86
SDF4-207ENST00000494748 MRC2Q9UBG0 1479 aa20.4■□□□□ 0.86
SDF4-207ENST00000494748 PRAG1Q86YV5 1406 aa20.4■□□□□ 0.86
SDF4-207ENST00000494748 MYO5CQ9NQX4 1742 aa20.39■□□□□ 0.86
SDF4-207ENST00000494748 COL17A1Q9UMD9 1497 aaPredicted RBP20.39■□□□□ 0.85
SDF4-207ENST00000494748 PRDM15P57071 1507 aaPredicted RBP20.38■□□□□ 0.85
SDF4-207ENST00000494748 PLIN1O60240 522 aa20.37■□□□□ 0.85
SDF4-207ENST00000494748 ZNF777Q9ULD5 760 aaPredicted RBP20.37■□□□□ 0.85
SDF4-207ENST00000494748 KDM2AQ9Y2K7 1162 aa20.36■□□□□ 0.85
SDF4-207ENST00000494748 ABCA8O94911 1581 aa20.36■□□□□ 0.85
SDF4-207ENST00000494748 DCAF11Q8TEB1 546 aa20.36■□□□□ 0.85
SDF4-207ENST00000494748 ARHGEF5Q12774 1597 aa20.36■□□□□ 0.85
SDF4-207ENST00000494748 IFT140Q96RY7 1462 aa20.35■□□□□ 0.85
SDF4-207ENST00000494748 CRBNQ96SW2 442 aa20.35■□□□□ 0.85
SDF4-207ENST00000494748 GPRASP1Q5JY77 1395 aa20.35■□□□□ 0.85
SDF4-207ENST00000494748 FAM135AQ9P2D6 1515 aa20.35■□□□□ 0.85
SDF4-207ENST00000494748 KDM2BQ8NHM5 1336 aa20.34■□□□□ 0.85
SDF4-207ENST00000494748 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
SDF4-207ENST00000494748 PLEKHH2Q8IVE3 1493 aa20.33■□□□□ 0.85
SDF4-207ENST00000494748 DISP3Q9P2K9 1392 aa20.32■□□□□ 0.84
SDF4-207ENST00000494748 RTN4Q9NQC3 1192 aaKnown RBP20.3■□□□□ 0.84
SDF4-207ENST00000494748 A2MP01023 1474 aa20.3■□□□□ 0.84
SDF4-207ENST00000494748 C20orf194Q5TEA3 1177 aa20.3■□□□□ 0.84
SDF4-207ENST00000494748 PLA2R1Q13018 1463 aa20.29■□□□□ 0.84
SDF4-207ENST00000494748 VIRMAQ69YN4 1812 aaKnown RBP20.29■□□□□ 0.84
SDF4-207ENST00000494748 TESK2Q96S53 571 aa20.29■□□□□ 0.84
SDF4-207ENST00000494748 UNC13BO14795 1591 aa20.28■□□□□ 0.84
SDF4-207ENST00000494748 CDC42BPBQ9Y5S2 1711 aa20.28■□□□□ 0.84
SDF4-207ENST00000494748 RNF17Q9BXT8 1623 aaKnown RBP20.28■□□□□ 0.84
SDF4-207ENST00000494748 NBPF1Q3BBV0 1214 aa20.28■□□□□ 0.84
SDF4-207ENST00000494748 MAGI1Q96QZ7 1491 aaPredicted RBP20.27■□□□□ 0.83
SDF4-207ENST00000494748 SAMD9LQ8IVG5 1584 aa20.27■□□□□ 0.83
SDF4-207ENST00000494748 DDRGK1Q96HY6 314 aa20.26■□□□□ 0.83
SDF4-207ENST00000494748 SYNJ2O15056 1496 aa20.25■□□□□ 0.83
SDF4-207ENST00000494748 ATP10BO94823 1461 aa20.24■□□□□ 0.83
SDF4-207ENST00000494748 NFKBIBQ15653 356 aa20.24■□□□□ 0.83
SDF4-207ENST00000494748 EIF2AK4Q9P2K8 1649 aaKnown RBP20.23■□□□□ 0.83
SDF4-207ENST00000494748 CC2D1BQ5T0F9 858 aaKnown RBP20.22■□□□□ 0.83
SDF4-207ENST00000494748 ERBINQ96RT1 1412 aa20.22■□□□□ 0.83
SDF4-207ENST00000494748 C8orf34Q49A92 452 aa20.22■□□□□ 0.83
SDF4-207ENST00000494748 PREX2Q70Z35 1606 aa20.22■□□□□ 0.83
SDF4-207ENST00000494748 PLEKHH1Q9ULM0 1364 aa20.22■□□□□ 0.83
SDF4-207ENST00000494748 CLASP1Q7Z460 1538 aa20.22■□□□□ 0.83
SDF4-207ENST00000494748 GSE1Q14687 1217 aa20.22■□□□□ 0.83
SDF4-207ENST00000494748 BRPF3Q9ULD4 1205 aa20.21■□□□□ 0.83
SDF4-207ENST00000494748 IQGAP3Q86VI3 1631 aa20.2■□□□□ 0.82
SDF4-207ENST00000494748 ZNF521Q96K83 1311 aa20.2■□□□□ 0.82
SDF4-207ENST00000494748 CCDC144AA2RUR9 1427 aa20.2■□□□□ 0.82
SDF4-207ENST00000494748 SLC4A3P48751 1232 aa20.2■□□□□ 0.82
SDF4-207ENST00000494748 PANK3Q9H999 370 aa20.19■□□□□ 0.82
SDF4-207ENST00000494748 CCDC141Q6ZP82 1450 aa20.18■□□□□ 0.82
SDF4-207ENST00000494748 MAGI2Q86UL8 1455 aa20.18■□□□□ 0.82
SDF4-207ENST00000494748 WDR7Q9Y4E6 1490 aa20.18■□□□□ 0.82
SDF4-207ENST00000494748 DUSP27Q5VZP5 1158 aa20.18■□□□□ 0.82
SDF4-207ENST00000494748 IQGAP1P46940 1657 aa20.18■□□□□ 0.82
SDF4-207ENST00000494748 MAST1Q9Y2H9 1570 aa20.17■□□□□ 0.82
SDF4-207ENST00000494748 HNRNPMP52272 730 aaKnown RBP eCLIP20.17■□□□□ 0.821e-6■■□□□ 13.2
SDF4-207ENST00000494748 CENPQQ7L2Z9 268 aaPredicted RBP20.16■□□□□ 0.82
SDF4-207ENST00000494748 ADAMTS8Q9UP79 889 aa20.16■□□□□ 0.82
SDF4-207ENST00000494748 NUP160Q12769 1436 aa20.16■□□□□ 0.82
SDF4-207ENST00000494748 FRAT1Q92837 279 aaPredicted RBP20.15■□□□□ 0.82
SDF4-207ENST00000494748 MYOM1P52179 1685 aa20.15■□□□□ 0.82
SDF4-207ENST00000494748 TSPY4P0CV99 314 aa20.15■□□□□ 0.82
SDF4-207ENST00000494748 TSPY10P0CW01 314 aa20.15■□□□□ 0.82
SDF4-207ENST00000494748 FAM161AQ3B820 660 aa20.13■□□□□ 0.81
SDF4-207ENST00000494748 CARMIL2Q6F5E8 1435 aa20.13■□□□□ 0.81
SDF4-207ENST00000494748 ATP10AO60312 1499 aa20.12■□□□□ 0.81
SDF4-207ENST00000494748 PLEKHD1A6NEE1 506 aa20.12■□□□□ 0.81
SDF4-207ENST00000494748 PLXNC1O60486 1568 aa20.11■□□□□ 0.81
SDF4-207ENST00000494748 MADDQ8WXG6 1647 aa20.1■□□□□ 0.81
SDF4-207ENST00000494748 RGL3Q3MIN7 710 aa20.1■□□□□ 0.81
SDF4-207ENST00000494748 SYNMO15061 1565 aa20.1■□□□□ 0.81
SDF4-207ENST00000494748 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.09■□□□□ 0.81
SDF4-207ENST00000494748 SYCP2Q9BX26 1530 aa20.09■□□□□ 0.81
SDF4-207ENST00000494748 TRMT2AQ8IZ69 625 aaKnown RBP20.08■□□□□ 0.81
SDF4-207ENST00000494748 PPP2R1AP30153 589 aa20.07■□□□□ 0.8
SDF4-207ENST00000494748 JPH4Q96JJ6 628 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms