RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-208ENST00000494654 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.8□□□□□ -1.8
MDC1-208ENST00000494654 RIMBP3CA6NJZ7 1639 aa3.8□□□□□ -1.8
MDC1-208ENST00000494654 RIMBP3BA6NNM3 1639 aa3.8□□□□□ -1.8
MDC1-208ENST00000494654 RIMBP3Q9UFD9 1639 aa3.8□□□□□ -1.8
MDC1-208ENST00000494654 E9PCH4 1651 aa3.79□□□□□ -1.8
MDC1-208ENST00000494654 C11orf95C9JLR9 678 aaPredicted RBP3.79□□□□□ -1.8
MDC1-208ENST00000494654 BCANQ96GW7 911 aa3.79□□□□□ -1.8
MDC1-208ENST00000494654 LARP6Q9BRS8 491 aaKnown RBP3.79□□□□□ -1.8
MDC1-208ENST00000494654 SCUBE2Q9NQ36 999 aa3.79□□□□□ -1.8
MDC1-208ENST00000494654 NOP58Q9Y2X3 529 aaKnown RBP3.79□□□□□ -1.8
MDC1-208ENST00000494654 TIAM1Q13009 1591 aa3.79□□□□□ -1.8
MDC1-208ENST00000494654 CLIP1P30622 1438 aa3.78□□□□□ -1.8
MDC1-208ENST00000494654 G3V3G9 751 aa3.78□□□□□ -1.8
MDC1-208ENST00000494654 CCER2I3L3R5 266 aa3.78□□□□□ -1.8
MDC1-208ENST00000494654 MAP3K1Q13233 1512 aa3.78□□□□□ -1.8
MDC1-208ENST00000494654 NCOA2Q15596 1464 aa3.78□□□□□ -1.8
MDC1-208ENST00000494654 ARAP1Q96P48 1450 aa3.78□□□□□ -1.8
MDC1-208ENST00000494654 TOP2BQ02880 1626 aa3.77□□□□□ -1.81
MDC1-208ENST00000494654 WASHC2AQ641Q2 1341 aa3.77□□□□□ -1.81
MDC1-208ENST00000494654 RTL5Q5HYW3 569 aaPredicted RBP3.77□□□□□ -1.81
MDC1-208ENST00000494654 PLPP6Q8IY26 295 aa3.77□□□□□ -1.81
MDC1-208ENST00000494654 GPHNQ9NQX3 736 aaPredicted RBP3.77□□□□□ -1.81
MDC1-208ENST00000494654 EMILIN3Q9NT22 766 aa3.77□□□□□ -1.81
MDC1-208ENST00000494654 CDK11AQ9UQ88 783 aaPredicted RBP3.77□□□□□ -1.81
MDC1-208ENST00000494654 ATAD2BQ9ULI0 1458 aa3.77□□□□□ -1.81
MDC1-208ENST00000494654 WASHC2CQ9Y4E1 1318 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 POTEB3A0JP26 581 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 ST18O60284 1047 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 PPP1R15BQ5SWA1 713 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 POTEBQ6S5H4 581 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 TMC2Q8TDI7 906 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 UPF1Q92900 1129 aaKnown RBP eCLIP3.76□□□□□ -1.81
MDC1-208ENST00000494654 MARVELD3Q96A59 401 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 FAM163AQ96GL9 167 aaPredicted RBP3.76□□□□□ -1.81
MDC1-208ENST00000494654 CCDC136Q96JN2 1154 aa3.76□□□□□ -1.81
MDC1-208ENST00000494654 FOXK1P85037 733 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 MFSD10Q14728 455 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 MAMSTRQ6ZN01 415 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 IL27Q8NEV9 243 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 RYDENQ9NUL5 291 aaKnown RBP3.75□□□□□ -1.81
MDC1-208ENST00000494654 SOGA1O94964 1423 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 LRRIQ1Q96JM4 1722 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 RUSC2Q8N2Y8 1516 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 KDM5BQ9UGL1 1544 aa3.75□□□□□ -1.81
MDC1-208ENST00000494654 GLIPR1L2Q4G1C9 344 aa3.74□□□□□ -1.81
MDC1-208ENST00000494654 ARSIQ5FYB1 569 aa3.74□□□□□ -1.81
MDC1-208ENST00000494654 DDX27Q96GQ7 796 aaKnown RBP3.74□□□□□ -1.81
MDC1-208ENST00000494654 USP35Q9P2H5 1018 aa3.74□□□□□ -1.81
MDC1-208ENST00000494654 ARHGEF11O15085 1522 aa3.74□□□□□ -1.81
MDC1-208ENST00000494654 PTPN23Q9H3S7 1636 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 MRC2Q9UBG0 1479 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 PCF11O94913 1555 aaKnown RBP3.73□□□□□ -1.81
MDC1-208ENST00000494654 FHAD1B1AJZ9 1412 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 PDE4AP27815 886 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 GPR153Q6NV75 609 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 KCNV2Q8TDN2 545 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 RSPH6AQ9H0K4 717 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 SHROOM2Q13796 1616 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 KIF14Q15058 1648 aa3.73□□□□□ -1.81
MDC1-208ENST00000494654 LAMC3Q9Y6N6 1575 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 PDS5BQ9NTI5 1447 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 DPYSL4O14531 572 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 NUDT7P0C024 238 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 ITGAEP38570 1179 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 ANP32AP39687 249 aaKnown RBP3.72□□□□□ -1.81
MDC1-208ENST00000494654 PPP4R2Q9NY27 417 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 PODXL2Q9NZ53 605 aa3.72□□□□□ -1.81
MDC1-208ENST00000494654 CNTLNQ9NXG0 1405 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 HMGXB3Q12766 1538 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 KDM4FA0A1W2PPD8 638 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 CAMK2BQ13554 666 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 NBR1Q14596 966 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 OXER1Q8TDS5 423 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 IPO9Q96P70 1041 aaKnown RBP3.71□□□□□ -1.82
MDC1-208ENST00000494654 PCDHGA4Q9Y5G9 962 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 RAPGEF2Q9Y4G8 1499 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 ADGBQ8N7X0 1667 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 ITSN2Q9NZM3 1697 aa3.71□□□□□ -1.82
MDC1-208ENST00000494654 WDR62O43379 1518 aa3.7□□□□□ -1.82
MDC1-208ENST00000494654 PPP1R15AO75807 674 aaPredicted RBP3.7□□□□□ -1.82
MDC1-208ENST00000494654 PRIM1P49642 420 aaKnown RBP3.7□□□□□ -1.82
MDC1-208ENST00000494654 FAM43AQ8N2R8 423 aa3.7□□□□□ -1.82
MDC1-208ENST00000494654 SUPT6HQ7KZ85 1726 aaKnown RBP3.7□□□□□ -1.82
MDC1-208ENST00000494654 ZNF608Q9ULD9 1512 aaPredicted RBP3.7□□□□□ -1.82
MDC1-208ENST00000494654 CCNB3Q8WWL7 1395 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 RAB3GAP2Q9H2M9 1393 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 PPM1GO15355 546 aaPredicted RBP3.69□□□□□ -1.82
MDC1-208ENST00000494654 E2F4Q16254 413 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 POTEEQ6S8J3 1075 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 PTCD2Q8WV60 388 aaKnown RBP3.69□□□□□ -1.82
MDC1-208ENST00000494654 KCNH8Q96L42 1107 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 LHX6Q9UPM6 363 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 CUX1P39880 1505 aa3.69□□□□□ -1.82
MDC1-208ENST00000494654 SMG6Q86US8 1419 aaKnown RBP3.69□□□□□ -1.82
MDC1-208ENST00000494654 CROCC2H7BZ55 1655 aa3.68□□□□□ -1.82
MDC1-208ENST00000494654 PRXQ9BXM0 1461 aa3.68□□□□□ -1.82
MDC1-208ENST00000494654 CADPSQ9ULU8 1353 aa3.68□□□□□ -1.82
MDC1-208ENST00000494654 CHD1O14646 1710 aa3.68□□□□□ -1.82
MDC1-208ENST00000494654 FAM205CA6NFA0 338 aa3.68□□□□□ -1.82
MDC1-208ENST00000494654 ANP32CO43423 234 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms