RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 PROX2Q3B8N5 592 aa11.94□□□□□ -0.5
SMC4-224ENST00000494612 NYAP1Q6ZVC0 841 aa11.94□□□□□ -0.5
SMC4-224ENST00000494612 LAPTM4BQ86VI4 370 aa11.94□□□□□ -0.5
SMC4-224ENST00000494612 BCAMP50895 628 aa11.93□□□□□ -0.5
SMC4-224ENST00000494612 BBXQ8WY36 941 aaPredicted RBP11.93□□□□□ -0.5
SMC4-224ENST00000494612 SOWAHBA6NEL2 793 aa11.92□□□□□ -0.5
SMC4-224ENST00000494612 FBXW7Q969H0 707 aa11.91□□□□□ -0.5
SMC4-224ENST00000494612 PCDHGA10Q9Y5H3 936 aa11.91□□□□□ -0.5
SMC4-224ENST00000494612 COL9A1P20849 921 aa11.89□□□□□ -0.51
SMC4-224ENST00000494612 KCNC4Q03721 635 aa11.89□□□□□ -0.51
SMC4-224ENST00000494612 CAMK2BQ13554 666 aa11.89□□□□□ -0.51
SMC4-224ENST00000494612 TYW1BQ6NUM6 668 aa11.89□□□□□ -0.51
SMC4-224ENST00000494612 RTN4Q9NQC3 1192 aaKnown RBP11.89□□□□□ -0.51
SMC4-224ENST00000494612 ZFRQ96KR1 1074 aaKnown RBP11.88□□□□□ -0.51
SMC4-224ENST00000494612 KIAA1468Q9P260 1216 aa11.87□□□□□ -0.51
SMC4-224ENST00000494612 PHF14O94880 888 aa11.86□□□□□ -0.51
SMC4-224ENST00000494612 WBP1LQ9NX94 342 aa11.85□□□□□ -0.51
SMC4-224ENST00000494612 ONECUT3O60422 494 aaPredicted RBP11.84□□□□□ -0.51
SMC4-224ENST00000494612 LAPTM4AQ15012 233 aa11.83□□□□□ -0.52
SMC4-224ENST00000494612 SEPT9Q9UHD8 586 aaPredicted RBP11.81□□□□□ -0.52
SMC4-224ENST00000494612 AMER1Q5JTC6 1135 aaPredicted RBP11.8□□□□□ -0.52
SMC4-224ENST00000494612 SPRYD3Q8NCJ5 442 aa11.79□□□□□ -0.52
SMC4-224ENST00000494612 EPAS1Q99814 870 aa11.79□□□□□ -0.52
SMC4-224ENST00000494612 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.79□□□□□ -0.52
SMC4-224ENST00000494612 TSR3Q9UJK0 312 aaKnown RBP11.79□□□□□ -0.52
SMC4-224ENST00000494612 FAM98CQ17RN3 349 aaKnown RBP11.78□□□□□ -0.52
SMC4-224ENST00000494612 C6orf132Q5T0Z8 1188 aa11.78□□□□□ -0.52
SMC4-224ENST00000494612 LRCH3Q96II8 777 aa11.78□□□□□ -0.52
SMC4-224ENST00000494612 DPYSL4O14531 572 aa11.77□□□□□ -0.53
SMC4-224ENST00000494612 TRIM6-TRIM34B2RNG4 842 aa11.76□□□□□ -0.53
SMC4-224ENST00000494612 HPS5Q9UPZ3 1129 aa11.76□□□□□ -0.53
SMC4-224ENST00000494612 GFRA3O60609 400 aa11.73□□□□□ -0.53
SMC4-224ENST00000494612 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.72□□□□□ -0.53
SMC4-224ENST00000494612 TRAF7Q6Q0C0 670 aa11.71□□□□□ -0.53
SMC4-224ENST00000494612 RBM33Q96EV2 1170 aaKnown RBP11.71□□□□□ -0.53
SMC4-224ENST00000494612 PPP4CP60510 307 aa11.68□□□□□ -0.54
SMC4-224ENST00000494612 PACS2Q86VP3 889 aa11.68□□□□□ -0.54
SMC4-224ENST00000494612 PDIA6Q15084 440 aa11.66□□□□□ -0.54
SMC4-224ENST00000494612 DDX12PQ92771 950 aa11.66□□□□□ -0.54
SMC4-224ENST00000494612 PAXIP1Q6ZW49 1069 aaPredicted RBP11.65□□□□□ -0.54
SMC4-224ENST00000494612 PRKD2Q9BZL6 878 aa11.64□□□□□ -0.55
SMC4-224ENST00000494612 ARIH1Q9Y4X5 557 aaPredicted RBP11.64□□□□□ -0.55
SMC4-224ENST00000494612 SPDYE16A6NNV3 312 aaPredicted RBP11.63□□□□□ -0.55
SMC4-224ENST00000494612 E2F4Q16254 413 aa11.63□□□□□ -0.55
SMC4-224ENST00000494612 CFAP44Q96MT7 982 aa11.63□□□□□ -0.55
SMC4-224ENST00000494612 NRG2O14511 850 aaPredicted RBP11.62□□□□□ -0.55
SMC4-224ENST00000494612 LCE2BO14633 110 aa11.61□□□□□ -0.55
SMC4-224ENST00000494612 MAP3K7O43318 606 aa11.6□□□□□ -0.55
SMC4-224ENST00000494612 TJAP1Q5JTD0 557 aa11.6□□□□□ -0.55
SMC4-224ENST00000494612 TSKSQ9UJT2 592 aa11.6□□□□□ -0.55
SMC4-224ENST00000494612 EN1Q05925 392 aaPredicted RBP11.59□□□□□ -0.55
SMC4-224ENST00000494612 NBR1Q14596 966 aa11.59□□□□□ -0.55
SMC4-224ENST00000494612 IL21Q9HBE4 155 aa11.58□□□□□ -0.56
SMC4-224ENST00000494612 V9GY48 417 aaPredicted RBP11.58□□□□□ -0.56
SMC4-224ENST00000494612 TSR1Q2NL82 804 aaKnown RBP11.57□□□□□ -0.56
SMC4-224ENST00000494612 PPP1R18Q6NYC8 613 aa11.57□□□□□ -0.56
SMC4-224ENST00000494612 SAMD7Q7Z3H4 446 aa11.57□□□□□ -0.56
SMC4-224ENST00000494612 MTRQ99707 1265 aa11.56□□□□□ -0.56
SMC4-224ENST00000494612 PRIM1P49642 420 aaKnown RBP11.55□□□□□ -0.56
SMC4-224ENST00000494612 WDR70Q9NW82 654 aa11.55□□□□□ -0.56
SMC4-224ENST00000494612 SMAPO00193 183 aa11.53□□□□□ -0.56
SMC4-224ENST00000494612 CDCA7LQ96GN5 454 aa11.53□□□□□ -0.56
SMC4-224ENST00000494612 HDGFP51858 240 aaKnown RBP11.52□□□□□ -0.57
SMC4-224ENST00000494612 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.52□□□□□ -0.57
SMC4-224ENST00000494612 ZNF787Q6DD87 383 aa11.51□□□□□ -0.57
SMC4-224ENST00000494612 NBPF26B4DH59 902 aa11.5□□□□□ -0.57
SMC4-224ENST00000494612 RNF40O75150 1001 aa11.5□□□□□ -0.57
SMC4-224ENST00000494612 PRSS12P56730 875 aa11.5□□□□□ -0.57
SMC4-224ENST00000494612 CERKQ8TCT0 537 aa11.5□□□□□ -0.57
SMC4-224ENST00000494612 OSBPP22059 807 aa11.49□□□□□ -0.57
SMC4-224ENST00000494612 PDZRN3Q9UPQ7 1066 aa11.49□□□□□ -0.57
SMC4-224ENST00000494612 GRXCR2A6NFK2 248 aa11.48□□□□□ -0.57
SMC4-224ENST00000494612 FAM198AQ9UFP1 575 aa11.48□□□□□ -0.57
SMC4-224ENST00000494612 PNMA3Q9UL41 463 aa11.48□□□□□ -0.57
SMC4-224ENST00000494612 GGCXP38435 758 aa11.47□□□□□ -0.57
SMC4-224ENST00000494612 ZNF516Q92618 1163 aa11.47□□□□□ -0.57
SMC4-224ENST00000494612 TATDN2Q93075 761 aa11.47□□□□□ -0.57
SMC4-224ENST00000494612 NECTIN2Q92692 538 aa11.45□□□□□ -0.58
SMC4-224ENST00000494612 C3orf80F5H4A9 247 aa11.43□□□□□ -0.58
SMC4-224ENST00000494612 APLP1P51693 650 aa11.42□□□□□ -0.58
SMC4-224ENST00000494612 TSHZ2Q9NRE2 1034 aa11.42□□□□□ -0.58
SMC4-224ENST00000494612 CDHR5Q9HBB8 845 aa11.41□□□□□ -0.58
SMC4-224ENST00000494612 NUDT18Q6ZVK8 323 aa11.4□□□□□ -0.58
SMC4-224ENST00000494612 NKX2-3Q8TAU0 364 aa11.39□□□□□ -0.59
SMC4-224ENST00000494612 NPDC1Q9NQX5 325 aaPredicted RBP11.39□□□□□ -0.59
SMC4-224ENST00000494612 COPS2P61201 443 aa11.38□□□□□ -0.59
SMC4-224ENST00000494612 TMUB1Q9BVT8 246 aa11.38□□□□□ -0.59
SMC4-224ENST00000494612 SLC4A3P48751 1232 aa11.37□□□□□ -0.59
SMC4-224ENST00000494612 ZNF775Q96BV0 537 aaPredicted RBP11.37□□□□□ -0.59
SMC4-224ENST00000494612 RBM27Q9P2N5 1060 aaKnown RBP11.37□□□□□ -0.59
SMC4-224ENST00000494612 SLF2Q8IX21 1173 aa11.36□□□□□ -0.59
SMC4-224ENST00000494612 TTC13Q8NBP0 860 aa11.36□□□□□ -0.59
SMC4-224ENST00000494612 ARHGEF1Q92888 912 aaKnown RBP11.36□□□□□ -0.59
SMC4-224ENST00000494612 KCNV2Q8TDN2 545 aa11.32□□□□□ -0.6
SMC4-224ENST00000494612 ZPR1O75312 459 aa11.31□□□□□ -0.6
SMC4-224ENST00000494612 PKDCCQ504Y2 493 aa11.31□□□□□ -0.6
SMC4-224ENST00000494612 SWT1Q5T5J6 900 aaKnown RBP11.31□□□□□ -0.6
SMC4-224ENST00000494612 MLLT3P42568 568 aaPredicted RBP11.3□□□□□ -0.6
SMC4-224ENST00000494612 PRR14Q9BWN1 585 aa11.3□□□□□ -0.6
SMC4-224ENST00000494612 SLC19A1P41440 591 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms