RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 KDM5DQ9BY66 1539 aa22.58■■□□□ 1.2
CCDC88B-210ENST00000494566 ABCC2Q92887 1545 aa22.56■■□□□ 1.2
CCDC88B-210ENST00000494566 RALGAPBQ86X10 1494 aa22.55■■□□□ 1.2
CCDC88B-210ENST00000494566 PLEKHH2Q8IVE3 1493 aa22.55■■□□□ 1.2
CCDC88B-210ENST00000494566 ARHGEF12Q9NZN5 1544 aa22.54■■□□□ 1.2
CCDC88B-210ENST00000494566 UHRF1BP1Q6BDS2 1440 aa22.54■■□□□ 1.2
CCDC88B-210ENST00000494566 NBPF1Q3BBV0 1214 aa22.53■■□□□ 1.2
CCDC88B-210ENST00000494566 ROCK2O75116 1388 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-210ENST00000494566 RSPH4AQ5TD94 716 aa22.52■■□□□ 1.2
CCDC88B-210ENST00000494566 CCDC144AA2RUR9 1427 aa22.52■■□□□ 1.2
CCDC88B-210ENST00000494566 SALL2Q9Y467 1007 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-210ENST00000494566 MYO5CQ9NQX4 1742 aa22.5■■□□□ 1.19
CCDC88B-210ENST00000494566 PLA2R1Q13018 1463 aa22.49■■□□□ 1.19
CCDC88B-210ENST00000494566 ZCCHC11Q5TAX3 1644 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-210ENST00000494566 ZBED9Q6R2W3 1325 aa22.46■■□□□ 1.19
CCDC88B-210ENST00000494566 AFAP1Q8N556 730 aa22.45■■□□□ 1.18
CCDC88B-210ENST00000494566 TRAPPC8Q9Y2L5 1435 aa22.45■■□□□ 1.18
CCDC88B-210ENST00000494566 EFCAB2Q5VUJ9 269 aa22.44■■□□□ 1.18
CCDC88B-210ENST00000494566 NBR1Q14596 966 aa22.43■■□□□ 1.18
CCDC88B-210ENST00000494566 PPP4R2Q9NY27 417 aa22.42■■□□□ 1.18
CCDC88B-210ENST00000494566 PRAG1Q86YV5 1406 aa22.41■■□□□ 1.18
CCDC88B-210ENST00000494566 PLCH2O75038 1416 aa22.41■■□□□ 1.18
CCDC88B-210ENST00000494566 A2MP01023 1474 aa22.41■■□□□ 1.18
CCDC88B-210ENST00000494566 TMC1Q8TDI8 760 aa22.41■■□□□ 1.18
CCDC88B-210ENST00000494566 MAST1Q9Y2H9 1570 aa22.4■■□□□ 1.18
CCDC88B-210ENST00000494566 UNC13BO14795 1591 aa22.4■■□□□ 1.18
CCDC88B-210ENST00000494566 CLASP1Q7Z460 1538 aa22.38■■□□□ 1.17
CCDC88B-210ENST00000494566 ARID4BQ4LE39 1312 aaPredicted RBP22.38■■□□□ 1.17
CCDC88B-210ENST00000494566 MYT1LQ9UL68 1186 aa22.37■■□□□ 1.17
CCDC88B-210ENST00000494566 PLXNC1O60486 1568 aa22.36■■□□□ 1.17
CCDC88B-210ENST00000494566 TRPM1Q7Z4N2 1603 aa22.36■■□□□ 1.17
CCDC88B-210ENST00000494566 DUOX2Q9NRD8 1548 aa22.35■■□□□ 1.17
CCDC88B-210ENST00000494566 SPAG9O60271 1321 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-210ENST00000494566 PNISRQ8TF01 805 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-210ENST00000494566 IQGAP3Q86VI3 1631 aa22.34■■□□□ 1.17
CCDC88B-210ENST00000494566 ABCC1P33527 1531 aa22.33■■□□□ 1.17
CCDC88B-210ENST00000494566 DISP3Q9P2K9 1392 aa22.31■■□□□ 1.16
CCDC88B-210ENST00000494566 CC2D1BQ5T0F9 858 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-210ENST00000494566 ERBINQ96RT1 1412 aa22.29■■□□□ 1.16
CCDC88B-210ENST00000494566 PAK3O75914 559 aaPredicted RBP22.29■■□□□ 1.16
CCDC88B-210ENST00000494566 UHRF1BP1LA0JNW5 1464 aa22.27■■□□□ 1.16
CCDC88B-210ENST00000494566 TESK2Q96S53 571 aa22.27■■□□□ 1.16
CCDC88B-210ENST00000494566 MYBBP1AQ9BQG0 1328 aaKnown RBP22.26■■□□□ 1.15
CCDC88B-210ENST00000494566 CCDC136Q96JN2 1154 aa22.26■■□□□ 1.15
CCDC88B-210ENST00000494566 FANCIQ9NVI1 1328 aa22.26■■□□□ 1.15
CCDC88B-210ENST00000494566 NPM2Q86SE8 214 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-210ENST00000494566 MAGI2Q86UL8 1455 aa22.24■■□□□ 1.15
CCDC88B-210ENST00000494566 E9PCH4 1651 aa22.24■■□□□ 1.15
CCDC88B-210ENST00000494566 NUDCQ9Y266 331 aa22.24■■□□□ 1.15
CCDC88B-210ENST00000494566 KIF3BO15066 747 aa22.23■■□□□ 1.15
CCDC88B-210ENST00000494566 PANK3Q9H999 370 aa22.23■■□□□ 1.15
CCDC88B-210ENST00000494566 GPRASP1Q5JY77 1395 aa22.22■■□□□ 1.15
CCDC88B-210ENST00000494566 RALBP1Q15311 655 aa22.21■■□□□ 1.15
CCDC88B-210ENST00000494566 PER1O15534 1290 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-210ENST00000494566 ZFYVE16Q7Z3T8 1539 aa22.21■■□□□ 1.15
CCDC88B-210ENST00000494566 SMG6Q86US8 1419 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-210ENST00000494566 SCAPERQ9BY12 1400 aa22.2■■□□□ 1.14
CCDC88B-210ENST00000494566 KTN1Q86UP2 1357 aaKnown RBP22.2■■□□□ 1.14
CCDC88B-210ENST00000494566 FANCAO15360 1455 aa22.2■■□□□ 1.14
CCDC88B-210ENST00000494566 PRDM15P57071 1507 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-210ENST00000494566 WDR7Q9Y4E6 1490 aa22.19■■□□□ 1.14
CCDC88B-210ENST00000494566 COL17A1Q9UMD9 1497 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-210ENST00000494566 BRD4O60885 1362 aaPredicted RBP22.18■■□□□ 1.14
CCDC88B-210ENST00000494566 ATP10AO60312 1499 aa22.17■■□□□ 1.14
CCDC88B-210ENST00000494566 TMF1P82094 1093 aa22.17■■□□□ 1.14
CCDC88B-210ENST00000494566 SKAP1Q86WV1 359 aa22.16■■□□□ 1.14
CCDC88B-210ENST00000494566 LRPPRCP42704 1394 aaKnown RBP22.15■■□□□ 1.14
CCDC88B-210ENST00000494566 NLRP13Q86W25 1043 aa22.15■■□□□ 1.14
CCDC88B-210ENST00000494566 PARD3Q8TEW0 1356 aa22.15■■□□□ 1.14
CCDC88B-210ENST00000494566 DEKP35659 375 aaKnown RBP22.13■■□□□ 1.13
CCDC88B-210ENST00000494566 ADGRL1O94910 1474 aa22.13■■□□□ 1.13
CCDC88B-210ENST00000494566 ERICH6BQ5W0A0 696 aa22.13■■□□□ 1.13
CCDC88B-210ENST00000494566 EIF2AK4Q9P2K8 1649 aaKnown RBP22.12■■□□□ 1.13
CCDC88B-210ENST00000494566 ATP7AQ04656 1500 aa22.12■■□□□ 1.13
CCDC88B-210ENST00000494566 UGGT1Q9NYU2 1555 aa22.11■■□□□ 1.13
CCDC88B-210ENST00000494566 ASXL2Q76L83 1435 aa22.11■■□□□ 1.13
CCDC88B-210ENST00000494566 CLTCL1P53675 1640 aa22.11■■□□□ 1.13
CCDC88B-210ENST00000494566 RTEL1-TNFRSF6BF6WH68 1400 aa22.11■■□□□ 1.13
CCDC88B-210ENST00000494566 NOP58Q9Y2X3 529 aaKnown RBP22.1■■□□□ 1.13
CCDC88B-210ENST00000494566 SPHKAPQ2M3C7 1700 aa22.08■■□□□ 1.13
CCDC88B-210ENST00000494566 MADDQ8WXG6 1647 aa22.08■■□□□ 1.13
CCDC88B-210ENST00000494566 CDCA7LQ96GN5 454 aa22.08■■□□□ 1.12
CCDC88B-210ENST00000494566 TRPM2O94759 1503 aa22.07■■□□□ 1.12
CCDC88B-210ENST00000494566 LAMC1P11047 1609 aa22.07■■□□□ 1.12
CCDC88B-210ENST00000494566 ABCA9Q8IUA7 1624 aa22.07■■□□□ 1.12
CCDC88B-210ENST00000494566 KANK1Q14678 1352 aa22.06■■□□□ 1.12
CCDC88B-210ENST00000494566 EXOC6Q8TAG9 804 aa22.06■■□□□ 1.12
CCDC88B-210ENST00000494566 RNF17Q9BXT8 1623 aaKnown RBP22.06■■□□□ 1.12
CCDC88B-210ENST00000494566 CFAP70Q5T0N1 1121 aa22.05■■□□□ 1.12
CCDC88B-210ENST00000494566 PLIN1O60240 522 aa22.05■■□□□ 1.12
CCDC88B-210ENST00000494566 CHGAP10645 457 aaKnown RBP22.05■■□□□ 1.12
CCDC88B-210ENST00000494566 INO80Q9ULG1 1556 aaPredicted RBP22.05■■□□□ 1.12
CCDC88B-210ENST00000494566 ARAP3Q8WWN8 1544 aa22.04■■□□□ 1.12
CCDC88B-210ENST00000494566 PTPRTO14522 1441 aa22.04■■□□□ 1.12
CCDC88B-210ENST00000494566 CFAP65Q6ZU64 1925 aaKnown RBP22.03■■□□□ 1.12
CCDC88B-210ENST00000494566 CEP152O94986 1710 aa22.03■■□□□ 1.12
CCDC88B-210ENST00000494566 RNF123Q5XPI4 1314 aa22.03■■□□□ 1.12
CCDC88B-210ENST00000494566 ADGRF5Q8IZF2 1346 aa22.03■■□□□ 1.12
CCDC88B-210ENST00000494566 DEPDC5O75140 1603 aa22.02■■□□□ 1.12
CCDC88B-210ENST00000494566 TET3O43151 1660 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms