RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 TPRNQ4KMQ1 711 aa9.79□□□□□ -0.84
PTCD3-219ENST00000494323 ARHGEF1Q92888 912 aaKnown RBP9.79□□□□□ -0.84
PTCD3-219ENST00000494323 KDM4FA0A1W2PPD8 638 aa9.78□□□□□ -0.84
PTCD3-219ENST00000494323 PBX2P40425 430 aa9.75□□□□□ -0.85
PTCD3-219ENST00000494323 CAMK2BQ13554 666 aa9.75□□□□□ -0.85
PTCD3-219ENST00000494323 PPP4R3BQ5MIZ7 849 aa9.74□□□□□ -0.85
PTCD3-219ENST00000494323 WIZO95785 1651 aa9.74□□□□□ -0.85
PTCD3-219ENST00000494323 MAP3K9P80192 1104 aa9.73□□□□□ -0.85
PTCD3-219ENST00000494323 ARIH1Q9Y4X5 557 aaPredicted RBP9.73□□□□□ -0.85
PTCD3-219ENST00000494323 EVI5O60447 810 aa9.71□□□□□ -0.86
PTCD3-219ENST00000494323 LSM11P83369 360 aaKnown RBP eCLIP9.71□□□□□ -0.86
PTCD3-219ENST00000494323 ANKRD13DQ6ZTN6 518 aa9.71□□□□□ -0.86
PTCD3-219ENST00000494323 EMILIN3Q9NT22 766 aa9.71□□□□□ -0.86
PTCD3-219ENST00000494323 AXIN2Q9Y2T1 843 aa9.71□□□□□ -0.86
PTCD3-219ENST00000494323 MRC2Q9UBG0 1479 aa9.71□□□□□ -0.86
PTCD3-219ENST00000494323 POTEEQ6S8J3 1075 aa9.69□□□□□ -0.86
PTCD3-219ENST00000494323 ARHGAP33O14559 1287 aa9.68□□□□□ -0.86
PTCD3-219ENST00000494323 ZNF454Q8N9F8 522 aa9.68□□□□□ -0.86
PTCD3-219ENST00000494323 TULP1O00294 542 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-219ENST00000494323 ANO8Q9HCE9 1232 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-219ENST00000494323 WDR62O43379 1518 aa9.66□□□□□ -0.86
PTCD3-219ENST00000494323 PTGER2P43116 358 aa9.66□□□□□ -0.86
PTCD3-219ENST00000494323 KCNH8Q96L42 1107 aa9.66□□□□□ -0.86
PTCD3-219ENST00000494323 FANCD2Q9BXW9 1451 aa9.66□□□□□ -0.86
PTCD3-219ENST00000494323 JPH4Q96JJ6 628 aa9.65□□□□□ -0.86
PTCD3-219ENST00000494323 CEP164Q9UPV0 1460 aa9.65□□□□□ -0.87
PTCD3-219ENST00000494323 FOSBP53539 338 aa9.64□□□□□ -0.87
PTCD3-219ENST00000494323 MYT1LQ9UL68 1186 aa9.64□□□□□ -0.87
PTCD3-219ENST00000494323 DPYSL4O14531 572 aa9.63□□□□□ -0.87
PTCD3-219ENST00000494323 PSEN2P49810 448 aa9.63□□□□□ -0.87
PTCD3-219ENST00000494323 KCNK17Q96T54 332 aa9.63□□□□□ -0.87
PTCD3-219ENST00000494323 RSF1Q96T23 1441 aaPredicted RBP9.63□□□□□ -0.87
PTCD3-219ENST00000494323 CFTRP13569 1480 aa9.62□□□□□ -0.87
PTCD3-219ENST00000494323 TESPA1A2RU30 521 aaPredicted RBP9.62□□□□□ -0.87
PTCD3-219ENST00000494323 SEMA3EO15041 775 aa9.62□□□□□ -0.87
PTCD3-219ENST00000494323 RNF166Q96A37 237 aaPredicted RBP9.62□□□□□ -0.87
PTCD3-219ENST00000494323 SMYD5Q6GMV2 418 aa9.61□□□□□ -0.87
PTCD3-219ENST00000494323 BCL2L12Q9HB09 334 aa9.61□□□□□ -0.87
PTCD3-219ENST00000494323 SPDYE16A6NNV3 312 aaPredicted RBP9.6□□□□□ -0.87
PTCD3-219ENST00000494323 DMRTA1Q5VZB9 504 aa9.6□□□□□ -0.87
PTCD3-219ENST00000494323 ADGRD1Q6QNK2 874 aa9.6□□□□□ -0.87
PTCD3-219ENST00000494323 ZDHHC16Q969W1 377 aa9.6□□□□□ -0.87
PTCD3-219ENST00000494323 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.59□□□□□ -0.87
PTCD3-219ENST00000494323 URB2Q14146 1524 aaKnown RBP9.58□□□□□ -0.88
PTCD3-219ENST00000494323 TK2O00142 265 aa9.58□□□□□ -0.88
PTCD3-219ENST00000494323 PTPREP23469 700 aa9.58□□□□□ -0.88
PTCD3-219ENST00000494323 LMOD2Q6P5Q4 547 aa9.58□□□□□ -0.88
PTCD3-219ENST00000494323 PDIA6Q15084 440 aa9.57□□□□□ -0.88
PTCD3-219ENST00000494323 ADAM33Q9BZ11 813 aa9.57□□□□□ -0.88
PTCD3-219ENST00000494323 PHF14O94880 888 aa9.56□□□□□ -0.88
PTCD3-219ENST00000494323 PCDHGA10Q9Y5H3 936 aa9.56□□□□□ -0.88
PTCD3-219ENST00000494323 TOP2AP11388 1531 aaKnown RBP9.55□□□□□ -0.88
PTCD3-219ENST00000494323 TYW1BQ6NUM6 668 aa9.54□□□□□ -0.88
PTCD3-219ENST00000494323 FBXW7Q969H0 707 aa9.54□□□□□ -0.88
PTCD3-219ENST00000494323 STAC3Q96MF2 364 aa9.53□□□□□ -0.88
PTCD3-219ENST00000494323 DDX12PQ92771 950 aa9.52□□□□□ -0.89
PTCD3-219ENST00000494323 EPAS1Q99814 870 aa9.52□□□□□ -0.89
PTCD3-219ENST00000494323 CCDC88BA6NC98 1476 aa9.52□□□□□ -0.89
PTCD3-219ENST00000494323 ZNF608Q9ULD9 1512 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-219ENST00000494323 HRO43593 1189 aa9.51□□□□□ -0.89
PTCD3-219ENST00000494323 VPS9D1Q9Y2B5 631 aa9.51□□□□□ -0.89
PTCD3-219ENST00000494323 SLC4A5Q9BY07 1137 aa9.5□□□□□ -0.89
PTCD3-219ENST00000494323 PPP1R3GB7ZBB8 358 aa9.49□□□□□ -0.89
PTCD3-219ENST00000494323 MLLT3P42568 568 aaPredicted RBP9.49□□□□□ -0.89
PTCD3-219ENST00000494323 CYB5RLQ6IPT4 315 aa9.49□□□□□ -0.89
PTCD3-219ENST00000494323 ZBED2Q9BTP6 218 aa9.49□□□□□ -0.89
PTCD3-219ENST00000494323 IFT140Q96RY7 1462 aa9.47□□□□□ -0.89
PTCD3-219ENST00000494323 RIMBP3CA6NJZ7 1639 aa9.46□□□□□ -0.89
PTCD3-219ENST00000494323 RIMBP3BA6NNM3 1639 aa9.46□□□□□ -0.89
PTCD3-219ENST00000494323 RIMBP3Q9UFD9 1639 aa9.46□□□□□ -0.89
PTCD3-219ENST00000494323 RBM33Q96EV2 1170 aaKnown RBP9.46□□□□□ -0.9
PTCD3-219ENST00000494323 TOPBP1Q92547 1522 aa9.46□□□□□ -0.9
PTCD3-219ENST00000494323 ZC3H15Q8WU90 426 aaKnown RBP9.45□□□□□ -0.9
PTCD3-219ENST00000494323 AQRO60306 1485 aaKnown RBP eCLIP9.45□□□□□ -0.91e-8■■■■■ 29.2
PTCD3-219ENST00000494323 COL9A1P20849 921 aa9.44□□□□□ -0.9
PTCD3-219ENST00000494323 C6orf132Q5T0Z8 1188 aa9.44□□□□□ -0.9
PTCD3-219ENST00000494323 PRDM2Q13029 1718 aa9.43□□□□□ -0.9
PTCD3-219ENST00000494323 GRXCR2A6NFK2 248 aa9.43□□□□□ -0.9
PTCD3-219ENST00000494323 MAP3K7O43318 606 aa9.43□□□□□ -0.9
PTCD3-219ENST00000494323 EN1Q05925 392 aaPredicted RBP9.43□□□□□ -0.9
PTCD3-219ENST00000494323 NBPF3Q9H094 633 aa9.43□□□□□ -0.9
PTCD3-219ENST00000494323 ARHGEF11O15085 1522 aa9.42□□□□□ -0.9
PTCD3-219ENST00000494323 RBM26Q5T8P6 1007 aaKnown RBP9.42□□□□□ -0.9
PTCD3-219ENST00000494323 MRPL50Q8N5N7 158 aaKnown RBP9.42□□□□□ -0.9
PTCD3-219ENST00000494323 KCTD12Q96CX2 325 aaKnown RBP9.42□□□□□ -0.9
PTCD3-219ENST00000494323 GOLGA8CPA6NN73 597 aa9.41□□□□□ -0.9
PTCD3-219ENST00000494323 BHMG1C9JSJ3 638 aaPredicted RBP9.41□□□□□ -0.9
PTCD3-219ENST00000494323 PROX2Q3B8N5 592 aa9.41□□□□□ -0.9
PTCD3-219ENST00000494323 GPIHBP1Q8IV16 184 aa9.41□□□□□ -0.9
PTCD3-219ENST00000494323 HCSTQ9UBK5 93 aa9.4□□□□□ -0.9
PTCD3-219ENST00000494323 RABGEF1Q9UJ41 708 aa9.4□□□□□ -0.9
PTCD3-219ENST00000494323 ABCC8Q09428 1581 aa9.4□□□□□ -0.9
PTCD3-219ENST00000494323 TDRD9Q8NDG6 1382 aaKnown RBP9.39□□□□□ -0.91
PTCD3-219ENST00000494323 TSR1Q2NL82 804 aaKnown RBP9.39□□□□□ -0.91
PTCD3-219ENST00000494323 RAD54L2Q9Y4B4 1467 aa9.38□□□□□ -0.91
PTCD3-219ENST00000494323 EIF4G3O43432 1585 aaKnown RBP9.37□□□□□ -0.91
PTCD3-219ENST00000494323 DNMBPQ6XZF7 1577 aa9.37□□□□□ -0.91
PTCD3-219ENST00000494323 ZMYND10O75800 440 aa9.37□□□□□ -0.91
PTCD3-219ENST00000494323 OSBPP22059 807 aa9.37□□□□□ -0.91
PTCD3-219ENST00000494323 SOGA1O94964 1423 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms