RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NCOA1Q15788 1441 aa25.86■■□□□ 1.73
LIME1-208ENST00000493265 SETD1BQ9UPS6 1966 aaKnown RBP25.86■■□□□ 1.73
LIME1-208ENST00000493265 PCGF6Q9BYE7 350 aa25.85■■□□□ 1.73
LIME1-208ENST00000493265 PLXNC1O60486 1568 aa25.85■■□□□ 1.73
LIME1-208ENST00000493265 AGLP35573 1532 aa25.84■■□□□ 1.73
LIME1-208ENST00000493265 ROCK1Q13464 1354 aa25.83■■□□□ 1.73
LIME1-208ENST00000493265 ESF1Q9H501 851 aaKnown RBP25.81■■□□□ 1.72
LIME1-208ENST00000493265 A2MP01023 1474 aa25.79■■□□□ 1.72
LIME1-208ENST00000493265 DUOX2Q9NRD8 1548 aa25.78■■□□□ 1.72
LIME1-208ENST00000493265 DMRT2Q9Y5R5 561 aa25.76■■□□□ 1.71
LIME1-208ENST00000493265 DHX29Q7Z478 1369 aaKnown RBP25.76■■□□□ 1.71
LIME1-208ENST00000493265 NAIPQ13075 1403 aa25.75■■□□□ 1.71
LIME1-208ENST00000493265 HFM1A2PYH4 1435 aa25.74■■□□□ 1.71
LIME1-208ENST00000493265 GCC2Q8IWJ2 1684 aa25.74■■□□□ 1.71
LIME1-208ENST00000493265 ANKRD50Q9ULJ7 1429 aa25.72■■□□□ 1.71
LIME1-208ENST00000493265 CNTLNQ9NXG0 1405 aa25.71■■□□□ 1.71
LIME1-208ENST00000493265 KIF3BO15066 747 aa25.7■■□□□ 1.7
LIME1-208ENST00000493265 MROH2AA6NES4 1674 aa25.7■■□□□ 1.7
LIME1-208ENST00000493265 SETD5Q9C0A6 1442 aa25.7■■□□□ 1.7
LIME1-208ENST00000493265 ERBINQ96RT1 1412 aa25.69■■□□□ 1.7
LIME1-208ENST00000493265 PTPRTO14522 1441 aa25.67■■□□□ 1.7
LIME1-208ENST00000493265 CLTCQ00610 1675 aaKnown RBP25.65■■□□□ 1.7
LIME1-208ENST00000493265 GGT6Q6P531 493 aa25.65■■□□□ 1.7
LIME1-208ENST00000493265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.65■■□□□ 1.7
LIME1-208ENST00000493265 RAB3GAP2Q9H2M9 1393 aa25.64■■□□□ 1.69
LIME1-208ENST00000493265 EIF2AK4Q9P2K8 1649 aaKnown RBP25.63■■□□□ 1.69
LIME1-208ENST00000493265 CAMSAP1Q5T5Y3 1602 aa25.61■■□□□ 1.69
LIME1-208ENST00000493265 ZMYM3Q14202 1370 aa25.6■■□□□ 1.69
LIME1-208ENST00000493265 TRIM52Q96A61 297 aa25.6■■□□□ 1.69
LIME1-208ENST00000493265 NPATQ14207 1427 aa25.6■■□□□ 1.69
LIME1-208ENST00000493265 LTBP4Q8N2S1 1624 aa25.59■■□□□ 1.69
LIME1-208ENST00000493265 MYO3AQ8NEV4 1616 aa25.57■■□□□ 1.68
LIME1-208ENST00000493265 RNF17Q9BXT8 1623 aaKnown RBP25.55■■□□□ 1.68
LIME1-208ENST00000493265 ZNF142P52746 1687 aaPredicted RBP25.54■■□□□ 1.68
LIME1-208ENST00000493265 UNC13BO14795 1591 aa25.52■■□□□ 1.68
LIME1-208ENST00000493265 NUP155O75694 1391 aa25.52■■□□□ 1.68
LIME1-208ENST00000493265 KANK1Q14678 1352 aa25.52■■□□□ 1.68
LIME1-208ENST00000493265 DEPDC5O75140 1603 aa25.52■■□□□ 1.68
LIME1-208ENST00000493265 MROH1Q8NDA8 1641 aa25.52■■□□□ 1.68
LIME1-208ENST00000493265 DISP3Q9P2K9 1392 aa25.51■■□□□ 1.67
LIME1-208ENST00000493265 NCKAP5LQ9HCH0 1330 aa25.5■■□□□ 1.67
LIME1-208ENST00000493265 CEP170BQ9Y4F5 1589 aaPredicted RBP25.5■■□□□ 1.67
LIME1-208ENST00000493265 WASHC2CQ9Y4E1 1318 aa25.49■■□□□ 1.67
LIME1-208ENST00000493265 PRDM15P57071 1507 aaPredicted RBP25.48■■□□□ 1.67
LIME1-208ENST00000493265 IQSEC2Q5JU85 1478 aa25.47■■□□□ 1.67
LIME1-208ENST00000493265 CEP152O94986 1710 aa25.46■■□□□ 1.67
LIME1-208ENST00000493265 HRCP23327 699 aa25.44■■□□□ 1.66
LIME1-208ENST00000493265 PLA2R1Q13018 1463 aa25.43■■□□□ 1.66
LIME1-208ENST00000493265 PPP6R1Q9UPN7 881 aa25.43■■□□□ 1.66
LIME1-208ENST00000493265 SPATA31D1Q6ZQQ2 1576 aa25.43■■□□□ 1.66
LIME1-208ENST00000493265 KDM5DQ9BY66 1539 aa25.42■■□□□ 1.66
LIME1-208ENST00000493265 ZNF335Q9H4Z2 1342 aaPredicted RBP25.42■■□□□ 1.66
LIME1-208ENST00000493265 IQGAP3Q86VI3 1631 aa25.42■■□□□ 1.66
LIME1-208ENST00000493265 ABCC3O15438 1527 aa25.42■■□□□ 1.66
LIME1-208ENST00000493265 FAM135AQ9P2D6 1515 aa25.42■■□□□ 1.66
LIME1-208ENST00000493265 ILDR2Q71H61 639 aa25.41■■□□□ 1.66
LIME1-208ENST00000493265 SLC4A1APQ9BWU0 796 aaKnown RBP25.41■■□□□ 1.66
LIME1-208ENST00000493265 VWDEQ8N2E2 1590 aa25.4■■□□□ 1.66
LIME1-208ENST00000493265 PZPP20742 1482 aa25.4■■□□□ 1.66
LIME1-208ENST00000493265 ACIN1Q9UKV3 1341 aaKnown RBP25.39■■□□□ 1.66
LIME1-208ENST00000493265 MPHOSPH9Q99550 1183 aa25.38■■□□□ 1.65
LIME1-208ENST00000493265 ZC3H13Q5T200 1668 aaKnown RBP25.38■■□□□ 1.65
LIME1-208ENST00000493265 PKD2Q13563 968 aa25.37■■□□□ 1.65
LIME1-208ENST00000493265 A2ML1A8K2U0 1454 aa25.35■■□□□ 1.65
LIME1-208ENST00000493265 TET3O43151 1660 aa25.34■■□□□ 1.65
LIME1-208ENST00000493265 LMTK2Q8IWU2 1503 aa25.33■■□□□ 1.65
LIME1-208ENST00000493265 FOXD1Q16676 465 aa25.33■■□□□ 1.65
LIME1-208ENST00000493265 POLR1AO95602 1720 aaPredicted RBP25.32■■□□□ 1.64
LIME1-208ENST00000493265 UBAP1LF5GYI3 381 aa25.31■■□□□ 1.64
LIME1-208ENST00000493265 EFCAB6Q5THR3 1501 aa25.31■■□□□ 1.64
LIME1-208ENST00000493265 FBXO31Q5XUX0 539 aaPredicted RBP25.29■■□□□ 1.64
LIME1-208ENST00000493265 E9PCH4 1651 aa25.29■■□□□ 1.64
LIME1-208ENST00000493265 TNRQ92752 1358 aa25.29■■□□□ 1.64
LIME1-208ENST00000493265 CFAP65Q6ZU64 1925 aaKnown RBP25.26■■□□□ 1.63
LIME1-208ENST00000493265 DHX57Q6P158 1386 aaKnown RBP25.26■■□□□ 1.63
LIME1-208ENST00000493265 NEURL4Q96JN8 1562 aa25.26■■□□□ 1.63
LIME1-208ENST00000493265 SOCS7O14512 581 aa25.25■■□□□ 1.63
LIME1-208ENST00000493265 ARHGAP31Q2M1Z3 1444 aa25.22■■□□□ 1.63
LIME1-208ENST00000493265 RPRD2Q5VT52 1461 aaKnown RBP25.2■■□□□ 1.62
LIME1-208ENST00000493265 CCER1Q8TC90 406 aaPredicted RBP25.18■■□□□ 1.62
LIME1-208ENST00000493265 ERVK-7P63135 1459 aa25.17■■□□□ 1.62
LIME1-208ENST00000493265 UGGT1Q9NYU2 1555 aa25.16■■□□□ 1.62
LIME1-208ENST00000493265 SPHKAPQ2M3C7 1700 aa25.15■■□□□ 1.62
LIME1-208ENST00000493265 CPS1P31327 1500 aa25.15■■□□□ 1.62
LIME1-208ENST00000493265 NLRP1Q9C000 1473 aa25.15■■□□□ 1.62
LIME1-208ENST00000493265 SCAF1Q9H7N4 1312 aaKnown RBP25.14■■□□□ 1.62
LIME1-208ENST00000493265 ANKLE2Q86XL3 938 aa25.12■■□□□ 1.61
LIME1-208ENST00000493265 NOS1P29475 1434 aa25.12■■□□□ 1.61
LIME1-208ENST00000493265 SYNMO15061 1565 aa25.11■■□□□ 1.61
LIME1-208ENST00000493265 PIP4K2BP78356 416 aa25.11■■□□□ 1.61
LIME1-208ENST00000493265 THEMISQ8N1K5 641 aaPredicted RBP25.11■■□□□ 1.61
LIME1-208ENST00000493265 ANKRD30BQ9BXX2 1392 aa25.1■■□□□ 1.61
LIME1-208ENST00000493265 IQGAP1P46940 1657 aa25.09■■□□□ 1.61
LIME1-208ENST00000493265 NPHP4O75161 1426 aaPredicted RBP25.09■■□□□ 1.61
LIME1-208ENST00000493265 TRPM2O94759 1503 aa25.08■■□□□ 1.61
LIME1-208ENST00000493265 CHGAP10645 457 aaKnown RBP25.06■■□□□ 1.6
LIME1-208ENST00000493265 HSPA1LP34931 641 aa25.06■■□□□ 1.6
LIME1-208ENST00000493265 MED14O60244 1454 aa25.06■■□□□ 1.6
LIME1-208ENST00000493265 CLTCL1P53675 1640 aa25.05■■□□□ 1.6
LIME1-208ENST00000493265 CCDC144AA2RUR9 1427 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms