RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 MAGI2Q86UL8 1455 aa15.21■□□□□ 0.03
USP4-214ENST00000491791 RTEL1-TNFRSF6BF6WH68 1400 aa15.21■□□□□ 0.03
USP4-214ENST00000491791 ZFYVE16Q7Z3T8 1539 aa15.21■□□□□ 0.03
USP4-214ENST00000491791 DUOX2Q9NRD8 1548 aa15.21■□□□□ 0.03
USP4-214ENST00000491791 ARHGEF12Q9NZN5 1544 aa15.21■□□□□ 0.03
USP4-214ENST00000491791 SCAF1Q9H7N4 1312 aaKnown RBP15.2■□□□□ 0.02
USP4-214ENST00000491791 UHRF1BP1Q6BDS2 1440 aa15.2■□□□□ 0.02
USP4-214ENST00000491791 ZMYM4Q5VZL5 1548 aa15.2■□□□□ 0.02
USP4-214ENST00000491791 NUP155O75694 1391 aa15.2■□□□□ 0.02
USP4-214ENST00000491791 RIMS1Q86UR5 1692 aaKnown RBP15.19■□□□□ 0.02
USP4-214ENST00000491791 ERBINQ96RT1 1412 aa15.18■□□□□ 0.02
USP4-214ENST00000491791 PKD2Q13563 968 aa15.18■□□□□ 0.02
USP4-214ENST00000491791 LMTK3Q96Q04 1460 aa15.18■□□□□ 0.02
USP4-214ENST00000491791 SPATA31E1Q6ZUB1 1445 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 SCAPERQ9BY12 1400 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 IQGAP3Q86VI3 1631 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 ATP10AO60312 1499 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 FOXD1Q16676 465 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 PLPPR3Q6T4P5 718 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 FAM135AQ9P2D6 1515 aa15.17■□□□□ 0.02
USP4-214ENST00000491791 CCER2I3L3R5 266 aa15.16■□□□□ 0.02
USP4-214ENST00000491791 EIF4G2P78344 907 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP4-214ENST00000491791 MLECQ14165 292 aa15.16■□□□□ 0.02
USP4-214ENST00000491791 YEATS2Q9ULM3 1422 aa15.16■□□□□ 0.02
USP4-214ENST00000491791 DDX10Q13206 875 aaKnown RBP15.14■□□□□ 0.01
USP4-214ENST00000491791 POLR1AO95602 1720 aaPredicted RBP15.13■□□□□ 0.01
USP4-214ENST00000491791 NBPF8Q3BBV2 869 aa15.13■□□□□ 0.01
USP4-214ENST00000491791 HSPA5P11021 654 aaKnown RBP15.12■□□□□ 0.01
USP4-214ENST00000491791 HSPA2P54652 639 aa15.11■□□□□ 0.01
USP4-214ENST00000491791 MYT1LQ9UL68 1186 aa15.1■□□□□ 0.01
USP4-214ENST00000491791 FER1L4A9Z1Z3 1794 aa15.1■□□□□ 0.01
USP4-214ENST00000491791 TRAPPC8Q9Y2L5 1435 aa15.09■□□□□ 0.01
USP4-214ENST00000491791 RALGAPBQ86X10 1494 aa15.09■□□□□ 0.01
USP4-214ENST00000491791 ZNF518AQ6AHZ1 1483 aa15.08■□□□□ 0.01
USP4-214ENST00000491791 INO80Q9ULG1 1556 aaPredicted RBP15.08■□□□□ 0
USP4-214ENST00000491791 WASHC2AQ641Q2 1341 aa15.08■□□□□ 0
USP4-214ENST00000491791 DEPDC5O75140 1603 aa15.07■□□□□ 0
USP4-214ENST00000491791 PLA2R1Q13018 1463 aa15.07■□□□□ 0
USP4-214ENST00000491791 CCDC7Q96M83 1385 aa15.06■□□□□ 0
USP4-214ENST00000491791 SIGLEC1Q9BZZ2 1709 aa15.06■□□□□ 0
USP4-214ENST00000491791 ANP32CO43423 234 aa15.05■□□□□ -0
USP4-214ENST00000491791 VWDEQ8N2E2 1590 aa15.05■□□□□ -0
USP4-214ENST00000491791 EIF2AK4Q9P2K8 1649 aaKnown RBP15.05■□□□□ -0
USP4-214ENST00000491791 AFAP1Q8N556 730 aa15.04■□□□□ -0
USP4-214ENST00000491791 KDM5CP41229 1560 aa15.03■□□□□ -0
USP4-214ENST00000491791 CNTLNQ9NXG0 1405 aa15.03■□□□□ -0
USP4-214ENST00000491791 SPAG9O60271 1321 aaKnown RBP15.03■□□□□ -0
USP4-214ENST00000491791 YTHDC1Q96MU7 727 aaKnown RBP15.03■□□□□ -0
USP4-214ENST00000491791 HIRIP3Q9BW71 556 aaPredicted RBP15.03■□□□□ -0
USP4-214ENST00000491791 ESF1Q9H501 851 aaKnown RBP15.03■□□□□ -0
USP4-214ENST00000491791 ATP7AQ04656 1500 aa15.02■□□□□ -0
USP4-214ENST00000491791 GTF3C3Q9Y5Q9 886 aa15.02■□□□□ -0
USP4-214ENST00000491791 DMRT2Q9Y5R5 561 aa15.02■□□□□ -0
USP4-214ENST00000491791 NEURL4Q96JN8 1562 aa15.02□□□□□ -0.01
USP4-214ENST00000491791 CCDC144AA2RUR9 1427 aa15.01□□□□□ -0.01
USP4-214ENST00000491791 CERKQ8TCT0 537 aa15.01□□□□□ -0.01
USP4-214ENST00000491791 LAMC1P11047 1609 aa15.01□□□□□ -0.01
USP4-214ENST00000491791 PREX1Q8TCU6 1659 aa15□□□□□ -0.01
USP4-214ENST00000491791 PTPRTO14522 1441 aa15□□□□□ -0.01
USP4-214ENST00000491791 CEBPAP49715 358 aaPredicted RBP14.99□□□□□ -0.01
USP4-214ENST00000491791 STAC3Q96MF2 364 aa14.99□□□□□ -0.01
USP4-214ENST00000491791 GPRASP1Q5JY77 1395 aa14.98□□□□□ -0.01
USP4-214ENST00000491791 TET3O43151 1660 aa14.98□□□□□ -0.01
USP4-214ENST00000491791 MLH3Q9UHC1 1453 aa14.98□□□□□ -0.01
USP4-214ENST00000491791 REREQ9P2R6 1566 aa14.98□□□□□ -0.01
USP4-214ENST00000491791 DHX29Q7Z478 1369 aaKnown RBP14.98□□□□□ -0.01
USP4-214ENST00000491791 USP47Q96K76 1375 aa14.98□□□□□ -0.01
USP4-214ENST00000491791 PRDM15P57071 1507 aaPredicted RBP14.97□□□□□ -0.01
USP4-214ENST00000491791 TRPM1Q7Z4N2 1603 aa14.97□□□□□ -0.01
USP4-214ENST00000491791 C11orf95C9JLR9 678 aaPredicted RBP14.97□□□□□ -0.01
USP4-214ENST00000491791 PRAG1Q86YV5 1406 aa14.97□□□□□ -0.01
USP4-214ENST00000491791 DIP2CQ9Y2E4 1556 aa14.97□□□□□ -0.01
USP4-214ENST00000491791 SETD1BQ9UPS6 1966 aaKnown RBP14.96□□□□□ -0.01
USP4-214ENST00000491791 TRPM2O94759 1503 aa14.96□□□□□ -0.02
USP4-214ENST00000491791 KIF7Q2M1P5 1343 aa14.95□□□□□ -0.02
USP4-214ENST00000491791 E9PCH4 1651 aa14.95□□□□□ -0.02
USP4-214ENST00000491791 LMTK2Q8IWU2 1503 aa14.95□□□□□ -0.02
USP4-214ENST00000491791 ROCK2O75116 1388 aaKnown RBP14.95□□□□□ -0.02
USP4-214ENST00000491791 A2MP01023 1474 aa14.95□□□□□ -0.02
USP4-214ENST00000491791 KIDINS220Q9ULH0 1771 aa14.94□□□□□ -0.02
USP4-214ENST00000491791 AGLP35573 1532 aa14.93□□□□□ -0.02
USP4-214ENST00000491791 MROH1Q8NDA8 1641 aa14.93□□□□□ -0.02
USP4-214ENST00000491791 RNF17Q9BXT8 1623 aaKnown RBP14.93□□□□□ -0.02
USP4-214ENST00000491791 ABCA6Q8N139 1617 aa14.92□□□□□ -0.02
USP4-214ENST00000491791 SPHKAPQ2M3C7 1700 aa14.91□□□□□ -0.02
USP4-214ENST00000491791 KANK1Q14678 1352 aa14.9□□□□□ -0.02
USP4-214ENST00000491791 DCAF11Q8TEB1 546 aa14.9□□□□□ -0.02
USP4-214ENST00000491791 CEP152O94986 1710 aa14.89□□□□□ -0.03
USP4-214ENST00000491791 PRKRIP1Q9H875 184 aaPredicted RBP14.89□□□□□ -0.03
USP4-214ENST00000491791 C3P01024 1663 aa14.88□□□□□ -0.03
USP4-214ENST00000491791 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.88□□□□□ -0.037e-6■□□□□ 10.8
USP4-214ENST00000491791 CARD11Q9BXL7 1154 aa14.88□□□□□ -0.03
USP4-214ENST00000491791 STRCQ7RTU9 1775 aa14.87□□□□□ -0.03
USP4-214ENST00000491791 EFCAB6Q5THR3 1501 aa14.86□□□□□ -0.03
USP4-214ENST00000491791 KTN1Q86UP2 1357 aaKnown RBP14.85□□□□□ -0.03
USP4-214ENST00000491791 CLTCL1P53675 1640 aa14.84□□□□□ -0.03
USP4-214ENST00000491791 KIAA1210Q9ULL0 1709 aa14.84□□□□□ -0.03
USP4-214ENST00000491791 NPATQ14207 1427 aa14.83□□□□□ -0.03
USP4-214ENST00000491791 ZMYM3Q14202 1370 aa14.82□□□□□ -0.04
USP4-214ENST00000491791 ZNF326Q5BKZ1 582 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms