RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 HNRNPMP52272 730 aaKnown RBP eCLIP16.37■□□□□ 0.21
COL6A3-212ENST00000491769 GBP4Q96PP9 640 aa16.37■□□□□ 0.21
COL6A3-212ENST00000491769 MFAP1P55081 439 aaKnown RBP16.37■□□□□ 0.21
COL6A3-212ENST00000491769 CCDC146Q8IYE0 955 aa16.37■□□□□ 0.21
COL6A3-212ENST00000491769 TTC5Q8N0Z6 440 aa16.36■□□□□ 0.21
COL6A3-212ENST00000491769 AKAP17AQ02040 695 aaKnown RBP16.36■□□□□ 0.21
COL6A3-212ENST00000491769 LMOD3Q0VAK6 560 aa16.36■□□□□ 0.21
COL6A3-212ENST00000491769 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
COL6A3-212ENST00000491769 CYB5RLQ6IPT4 315 aa16.35■□□□□ 0.21
COL6A3-212ENST00000491769 VPS37DQ86XT2 251 aa16.34■□□□□ 0.21
COL6A3-212ENST00000491769 SYAP1Q96A49 352 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-212ENST00000491769 DHX16O60231 1041 aaKnown RBP16.34■□□□□ 0.21
COL6A3-212ENST00000491769 TPD52L1Q16890 204 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-212ENST00000491769 GZF1Q9H116 711 aaPredicted RBP16.34■□□□□ 0.21
COL6A3-212ENST00000491769 TRAK1Q9UPV9 953 aa16.34■□□□□ 0.21
COL6A3-212ENST00000491769 CLUAP1Q96AJ1 413 aa16.34■□□□□ 0.21
COL6A3-212ENST00000491769 FOXD4L1Q9NU39 408 aa16.33■□□□□ 0.2
COL6A3-212ENST00000491769 ARHGAP35Q9NRY4 1499 aa16.32■□□□□ 0.2
COL6A3-212ENST00000491769 TPM3P06753 285 aa16.32■□□□□ 0.2
COL6A3-212ENST00000491769 ARID3AQ99856 593 aa16.32■□□□□ 0.2
COL6A3-212ENST00000491769 TNIKQ9UKE5 1360 aa16.31■□□□□ 0.2
COL6A3-212ENST00000491769 KIF16BQ96L93 1317 aa16.31■□□□□ 0.2
COL6A3-212ENST00000491769 SLKQ9H2G2 1235 aaPredicted RBP16.31■□□□□ 0.2
COL6A3-212ENST00000491769 ANKRD30AQ9BXX3 1397 aa16.31■□□□□ 0.2
COL6A3-212ENST00000491769 TEFQ10587 303 aa16.3■□□□□ 0.2
COL6A3-212ENST00000491769 PMFBP1Q8TBY8 1022 aa16.3■□□□□ 0.2
COL6A3-212ENST00000491769 CSPP1Q1MSJ5 1256 aa16.3■□□□□ 0.2
COL6A3-212ENST00000491769 SYNE3Q6ZMZ3 975 aa16.3■□□□□ 0.2
COL6A3-212ENST00000491769 FOXD4L5Q5VV16 416 aaPredicted RBP16.3■□□□□ 0.2
COL6A3-212ENST00000491769 FOXD4L4Q8WXT5 416 aaPredicted RBP16.3■□□□□ 0.2
COL6A3-212ENST00000491769 H3BQV1 296 aa16.29■□□□□ 0.2
COL6A3-212ENST00000491769 IFFO2Q5TF58 517 aa16.29■□□□□ 0.2
COL6A3-212ENST00000491769 GOLGA6L1Q8N7Z2 621 aa16.29■□□□□ 0.2
COL6A3-212ENST00000491769 EIF2S2P20042 333 aaKnown RBP16.29■□□□□ 0.2
COL6A3-212ENST00000491769 PTMSP20962 102 aa16.29■□□□□ 0.2
COL6A3-212ENST00000491769 COG3Q96JB2 828 aa16.29■□□□□ 0.2
COL6A3-212ENST00000491769 RILPL2Q969X0 211 aa16.29■□□□□ 0.2
COL6A3-212ENST00000491769 PSME1Q06323 249 aa16.28■□□□□ 0.2
COL6A3-212ENST00000491769 RCAN3Q9UKA8 241 aa16.28■□□□□ 0.2
COL6A3-212ENST00000491769 KIF3AQ9Y496 699 aa16.28■□□□□ 0.2
COL6A3-212ENST00000491769 PPP1R1BQ9UD71 204 aaPredicted RBP16.28■□□□□ 0.2
COL6A3-212ENST00000491769 RBM33Q96EV2 1170 aaKnown RBP16.27■□□□□ 0.2
COL6A3-212ENST00000491769 ELL2O00472 640 aaPredicted RBP16.27■□□□□ 0.2
COL6A3-212ENST00000491769 CCDC43Q96MW1 224 aaKnown RBP16.27■□□□□ 0.19
COL6A3-212ENST00000491769 APPP05067 770 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 NEXNQ0ZGT2 675 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 RALBP1Q15311 655 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 PDS5BQ9NTI5 1447 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 FAM184AQ8NB25 1140 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 TPM2P07951 284 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 MPHOSPH9Q99550 1183 aa16.26■□□□□ 0.19
COL6A3-212ENST00000491769 RRP7AQ9Y3A4 280 aaKnown RBP16.25■□□□□ 0.19
COL6A3-212ENST00000491769 TSR1Q2NL82 804 aaKnown RBP16.25■□□□□ 0.19
COL6A3-212ENST00000491769 TDRD9Q8NDG6 1382 aaKnown RBP16.25■□□□□ 0.19
COL6A3-212ENST00000491769 NECTIN2Q92692 538 aa16.24■□□□□ 0.19
COL6A3-212ENST00000491769 SETD5Q9C0A6 1442 aa16.23■□□□□ 0.19
COL6A3-212ENST00000491769 ATF3P18847 181 aa16.23■□□□□ 0.19
COL6A3-212ENST00000491769 C9orf78Q9NZ63 289 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-212ENST00000491769 SOGA1O94964 1423 aa16.22■□□□□ 0.19
COL6A3-212ENST00000491769 CENPJQ9HC77 1338 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-212ENST00000491769 PCMTD1Q96MG8 357 aaPredicted RBP16.21■□□□□ 0.19
COL6A3-212ENST00000491769 MCTP1Q6DN14 999 aa16.21■□□□□ 0.19
COL6A3-212ENST00000491769 NACADO15069 1562 aa16.21■□□□□ 0.18
COL6A3-212ENST00000491769 TCERG1O14776 1098 aaKnown RBP16.2■□□□□ 0.18
COL6A3-212ENST00000491769 SF3B2Q13435 895 aaKnown RBP16.2■□□□□ 0.18
COL6A3-212ENST00000491769 LRRFIP1Q32MZ4 808 aaKnown RBP16.2■□□□□ 0.18
COL6A3-212ENST00000491769 MINK1Q8N4C8 1332 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-212ENST00000491769 ST18O60284 1047 aa16.19■□□□□ 0.18
COL6A3-212ENST00000491769 TRIM29Q14134 588 aa16.19■□□□□ 0.18
COL6A3-212ENST00000491769 FYB1O15117 783 aa16.19■□□□□ 0.18
COL6A3-212ENST00000491769 CCDC180Q9P1Z9 1646 aa16.18■□□□□ 0.18
COL6A3-212ENST00000491769 CECR2Q9BXF3 1484 aa16.18■□□□□ 0.18
COL6A3-212ENST00000491769 CCAR1Q8IX12 1150 aaKnown RBP16.18■□□□□ 0.18
COL6A3-212ENST00000491769 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.18■□□□□ 0.18
COL6A3-212ENST00000491769 FOXD4L6Q3SYB3 417 aaPredicted RBP16.17■□□□□ 0.18
COL6A3-212ENST00000491769 FOXD4L3Q6VB84 417 aaPredicted RBP16.17■□□□□ 0.18
COL6A3-212ENST00000491769 DIAPH3Q9NSV4 1193 aa16.17■□□□□ 0.18
COL6A3-212ENST00000491769 CPLX2Q6PUV4 134 aaKnown RBP16.16■□□□□ 0.18
COL6A3-212ENST00000491769 NFXL1Q6ZNB6 911 aa16.16■□□□□ 0.18
COL6A3-212ENST00000491769 CCDC47Q96A33 483 aaKnown RBP16.16■□□□□ 0.18
COL6A3-212ENST00000491769 TPM1P09493 284 aa16.15■□□□□ 0.18
COL6A3-212ENST00000491769 CCAR2Q8N163 923 aaKnown RBP16.15■□□□□ 0.18
COL6A3-212ENST00000491769 R3HCC1Q9Y3T6 440 aaKnown RBP16.15■□□□□ 0.18
COL6A3-212ENST00000491769 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.14■□□□□ 0.17
COL6A3-212ENST00000491769 CCDC27Q2M243 656 aa16.14■□□□□ 0.17
COL6A3-212ENST00000491769 USP35Q9P2H5 1018 aa16.14■□□□□ 0.17
COL6A3-212ENST00000491769 ERICH2A1L162 156 aa16.14■□□□□ 0.17
COL6A3-212ENST00000491769 VGFO15240 615 aaPredicted RBP16.14■□□□□ 0.17
COL6A3-212ENST00000491769 ANKRD45Q5TZF3 282 aa16.14■□□□□ 0.17
COL6A3-212ENST00000491769 CHMP4CQ96CF2 233 aa16.13■□□□□ 0.17
COL6A3-212ENST00000491769 MTMR7Q9Y216 660 aa16.13■□□□□ 0.17
COL6A3-212ENST00000491769 DDX58O95786 925 aaKnown RBP16.13■□□□□ 0.17
COL6A3-212ENST00000491769 IFIT2P09913 472 aaKnown RBP16.13■□□□□ 0.17
COL6A3-212ENST00000491769 IKQ13123 557 aaPredicted RBP16.13■□□□□ 0.17
COL6A3-212ENST00000491769 BCL2L13Q9BXK5 485 aa16.13■□□□□ 0.17
COL6A3-212ENST00000491769 EVC2Q86UK5 1308 aa16.13■□□□□ 0.17
COL6A3-212ENST00000491769 PHF14O94880 888 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 SLC4A3P48751 1232 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 TRDNQ13061 729 aa16.12■□□□□ 0.17
COL6A3-212ENST00000491769 RAPGEF4Q8WZA2 1011 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms