RNA–Protein interactions for RNA: ENST00000491685.5

TMEM39A-211, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 852 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-211ENST00000491685 KDM5DQ9BY66 1539 aa17.46■□□□□ 0.39
TMEM39A-211ENST00000491685 RNF17Q9BXT8 1623 aaKnown RBP17.44■□□□□ 0.38
TMEM39A-211ENST00000491685 CROCC2H7BZ55 1655 aa17.44■□□□□ 0.38
TMEM39A-211ENST00000491685 DNMT1P26358 1616 aaKnown RBP17.43■□□□□ 0.38
TMEM39A-211ENST00000491685 MYOM3Q5VTT5 1437 aa17.42■□□□□ 0.38
TMEM39A-211ENST00000491685 MROH1Q8NDA8 1641 aa17.42■□□□□ 0.38
TMEM39A-211ENST00000491685 FAM135AQ9P2D6 1515 aa17.42■□□□□ 0.38
TMEM39A-211ENST00000491685 POLR1AO95602 1720 aaPredicted RBP17.41■□□□□ 0.38
TMEM39A-211ENST00000491685 EIF2AK4Q9P2K8 1649 aaKnown RBP17.41■□□□□ 0.38
TMEM39A-211ENST00000491685 KIF3BO15066 747 aa17.41■□□□□ 0.38
TMEM39A-211ENST00000491685 PLA2R1Q13018 1463 aa17.41■□□□□ 0.38
TMEM39A-211ENST00000491685 TCOF1Q13428 1488 aaKnown RBP17.41■□□□□ 0.38
TMEM39A-211ENST00000491685 CEP152O94986 1710 aa17.41■□□□□ 0.38
TMEM39A-211ENST00000491685 PZPP20742 1482 aa17.4■□□□□ 0.38
TMEM39A-211ENST00000491685 NCKAP5LQ9HCH0 1330 aa17.4■□□□□ 0.38
TMEM39A-211ENST00000491685 A2ML1A8K2U0 1454 aa17.39■□□□□ 0.37
TMEM39A-211ENST00000491685 PPP6R1Q9UPN7 881 aa17.39■□□□□ 0.37
TMEM39A-211ENST00000491685 ZC3H13Q5T200 1668 aaKnown RBP17.39■□□□□ 0.37
TMEM39A-211ENST00000491685 PTPN23Q9H3S7 1636 aa17.38■□□□□ 0.37
TMEM39A-211ENST00000491685 MIA2Q96PC5 1412 aa17.38■□□□□ 0.37
TMEM39A-211ENST00000491685 NEURL4Q96JN8 1562 aa17.37■□□□□ 0.37
TMEM39A-211ENST00000491685 RSPH4AQ5TD94 716 aa17.37■□□□□ 0.37
TMEM39A-211ENST00000491685 FBXO31Q5XUX0 539 aaPredicted RBP17.37■□□□□ 0.37
TMEM39A-211ENST00000491685 ABCC3O15438 1527 aa17.37■□□□□ 0.37
TMEM39A-211ENST00000491685 TNRQ92752 1358 aa17.35■□□□□ 0.37
TMEM39A-211ENST00000491685 TSPY4P0CV99 314 aa17.34■□□□□ 0.37
TMEM39A-211ENST00000491685 TSPY10P0CW01 314 aa17.34■□□□□ 0.37
TMEM39A-211ENST00000491685 ZNF335Q9H4Z2 1342 aaPredicted RBP17.33■□□□□ 0.36
TMEM39A-211ENST00000491685 WASHC2CQ9Y4E1 1318 aa17.32■□□□□ 0.36
TMEM39A-211ENST00000491685 DUOX2Q9NRD8 1548 aa17.31■□□□□ 0.36
TMEM39A-211ENST00000491685 CFAP65Q6ZU64 1925 aaKnown RBP17.31■□□□□ 0.36
TMEM39A-211ENST00000491685 UBAP1LF5GYI3 381 aa17.31■□□□□ 0.36
TMEM39A-211ENST00000491685 SHANK2Q9UPX8 1470 aa17.31■□□□□ 0.36
TMEM39A-211ENST00000491685 ABCC5O15440 1437 aa17.3■□□□□ 0.36
TMEM39A-211ENST00000491685 MED1Q15648 1581 aaPredicted RBP17.29■□□□□ 0.36
TMEM39A-211ENST00000491685 PKD2Q13563 968 aa17.29■□□□□ 0.36
TMEM39A-211ENST00000491685 PRDM15P57071 1507 aaPredicted RBP17.29■□□□□ 0.36
TMEM39A-211ENST00000491685 DEPDC5O75140 1603 aa17.29■□□□□ 0.36
TMEM39A-211ENST00000491685 UGGT1Q9NYU2 1555 aa17.28■□□□□ 0.36
TMEM39A-211ENST00000491685 ERVK-7P63135 1459 aa17.28■□□□□ 0.36
TMEM39A-211ENST00000491685 DAPK1P53355 1430 aa17.28■□□□□ 0.36
TMEM39A-211ENST00000491685 FGD6Q6ZV73 1430 aa17.28■□□□□ 0.36
TMEM39A-211ENST00000491685 NLRP1Q9C000 1473 aa17.27■□□□□ 0.36
TMEM39A-211ENST00000491685 UBR1Q8IWV7 1749 aa17.26■□□□□ 0.35
TMEM39A-211ENST00000491685 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.26■□□□□ 0.35
TMEM39A-211ENST00000491685 KIF15Q9NS87 1388 aa17.26■□□□□ 0.35
TMEM39A-211ENST00000491685 VWDEQ8N2E2 1590 aa17.24■□□□□ 0.35
TMEM39A-211ENST00000491685 IQGAP1P46940 1657 aa17.24■□□□□ 0.35
TMEM39A-211ENST00000491685 ERBINQ96RT1 1412 aa17.23■□□□□ 0.35
TMEM39A-211ENST00000491685 STRCP1A6NGW2 1772 aa17.23■□□□□ 0.35
TMEM39A-211ENST00000491685 CPS1P31327 1500 aa17.22■□□□□ 0.35
TMEM39A-211ENST00000491685 APLP2Q06481 763 aa17.2■□□□□ 0.34
TMEM39A-211ENST00000491685 RRP7BPQ9NSQ0 103 aa17.2■□□□□ 0.34
TMEM39A-211ENST00000491685 MED14O60244 1454 aa17.19■□□□□ 0.34
TMEM39A-211ENST00000491685 PIK3C2BO00750 1634 aa17.19■□□□□ 0.34
TMEM39A-211ENST00000491685 NPHP4O75161 1426 aaPredicted RBP17.19■□□□□ 0.34
TMEM39A-211ENST00000491685 ARHGAP31Q2M1Z3 1444 aa17.16■□□□□ 0.34
TMEM39A-211ENST00000491685 HSPA1LP34931 641 aa17.16■□□□□ 0.34
TMEM39A-211ENST00000491685 THEMISQ8N1K5 641 aaPredicted RBP17.15■□□□□ 0.34
TMEM39A-211ENST00000491685 CHIC2Q9UKJ5 165 aa17.15■□□□□ 0.34
TMEM39A-211ENST00000491685 ADGRL2O95490 1459 aa17.15■□□□□ 0.34
TMEM39A-211ENST00000491685 SYNMO15061 1565 aa17.15■□□□□ 0.34
TMEM39A-211ENST00000491685 ALKQ9UM73 1620 aa17.14■□□□□ 0.33
TMEM39A-211ENST00000491685 ANKLE2Q86XL3 938 aa17.14■□□□□ 0.33
TMEM39A-211ENST00000491685 LMTK2Q8IWU2 1503 aa17.14■□□□□ 0.33
TMEM39A-211ENST00000491685 EFCAB6Q5THR3 1501 aa17.13■□□□□ 0.33
TMEM39A-211ENST00000491685 TOM1O60784 492 aa17.13■□□□□ 0.33
TMEM39A-211ENST00000491685 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.13■□□□□ 0.33
TMEM39A-211ENST00000491685 ANKRD30AQ9BXX3 1397 aa17.13■□□□□ 0.33
TMEM39A-211ENST00000491685 ARHGAP23Q9P227 1491 aa17.12■□□□□ 0.33
TMEM39A-211ENST00000491685 SLIT1O75093 1534 aa17.12■□□□□ 0.33
TMEM39A-211ENST00000491685 SCAF1Q9H7N4 1312 aaKnown RBP17.12■□□□□ 0.33
TMEM39A-211ENST00000491685 SCAF11Q99590 1463 aaKnown RBP17.11■□□□□ 0.33
TMEM39A-211ENST00000491685 PIP4K2BP78356 416 aa17.1■□□□□ 0.33
TMEM39A-211ENST00000491685 KDM5AP29375 1690 aaKnown RBP17.1■□□□□ 0.33
TMEM39A-211ENST00000491685 XIRP1Q702N8 1843 aaKnown RBP17.1■□□□□ 0.33
TMEM39A-211ENST00000491685 MYO5BQ9ULV0 1848 aa17.08■□□□□ 0.33
TMEM39A-211ENST00000491685 KANK1Q14678 1352 aa17.07■□□□□ 0.32
TMEM39A-211ENST00000491685 FAM50AQ14320 339 aaKnown RBP17.07■□□□□ 0.32
TMEM39A-211ENST00000491685 UNC13BO14795 1591 aa17.06■□□□□ 0.32
TMEM39A-211ENST00000491685 LRRC7Q96NW7 1537 aa17.06■□□□□ 0.32
TMEM39A-211ENST00000491685 TET3O43151 1660 aa17.06■□□□□ 0.32
TMEM39A-211ENST00000491685 GCC2Q8IWJ2 1684 aa17.05■□□□□ 0.32
TMEM39A-211ENST00000491685 LTKP29376 864 aa17.05■□□□□ 0.32
TMEM39A-211ENST00000491685 ADGRB3O60242 1522 aa17.05■□□□□ 0.32
TMEM39A-211ENST00000491685 NOS1P29475 1434 aa17.04■□□□□ 0.32
TMEM39A-211ENST00000491685 ANKRD50Q9ULJ7 1429 aa17.04■□□□□ 0.32
TMEM39A-211ENST00000491685 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
TMEM39A-211ENST00000491685 TMEM2Q9UHN6 1383 aa17.02■□□□□ 0.31
TMEM39A-211ENST00000491685 E9PCH4 1651 aa17.01■□□□□ 0.31
TMEM39A-211ENST00000491685 TXNDC2Q86VQ3 553 aa17■□□□□ 0.31
TMEM39A-211ENST00000491685 IDI1Q13907 227 aa16.99■□□□□ 0.31
TMEM39A-211ENST00000491685 IQGAP3Q86VI3 1631 aa16.99■□□□□ 0.31
TMEM39A-211ENST00000491685 RPRD2Q5VT52 1461 aaKnown RBP16.98■□□□□ 0.31
TMEM39A-211ENST00000491685 TMEM131LA2VDJ0 1609 aa16.97■□□□□ 0.31
TMEM39A-211ENST00000491685 PPARGC1BQ86YN6 1023 aaKnown RBP16.95■□□□□ 0.3
TMEM39A-211ENST00000491685 NWD1Q149M9 1564 aa16.94■□□□□ 0.3
TMEM39A-211ENST00000491685 STAG3Q9UJ98 1225 aa16.94■□□□□ 0.3
TMEM39A-211ENST00000491685 ROCK1Q13464 1354 aa16.93■□□□□ 0.3
TMEM39A-211ENST00000491685 EID1Q9Y6B2 187 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms