RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 SPRYD3Q8NCJ5 442 aa12.58□□□□□ -0.4
PHC3-213ENST00000491258 PROX2Q3B8N5 592 aa12.57□□□□□ -0.4
PHC3-213ENST00000491258 AMER1Q5JTC6 1135 aaPredicted RBP12.57□□□□□ -0.4
PHC3-213ENST00000491258 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.57□□□□□ -0.4
PHC3-213ENST00000491258 IFFO2Q5TF58 517 aa12.54□□□□□ -0.4
PHC3-213ENST00000491258 EPAS1Q99814 870 aa12.54□□□□□ -0.4
PHC3-213ENST00000491258 RABGEF1Q9UJ41 708 aa12.53□□□□□ -0.4
PHC3-213ENST00000491258 RGS20O76081 388 aa12.52□□□□□ -0.41
PHC3-213ENST00000491258 DDX12PQ92771 950 aa12.52□□□□□ -0.41
PHC3-213ENST00000491258 RBM33Q96EV2 1170 aaKnown RBP12.52□□□□□ -0.41
PHC3-213ENST00000491258 C6orf132Q5T0Z8 1188 aa12.51□□□□□ -0.41
PHC3-213ENST00000491258 CFAP44Q96MT7 982 aa12.5□□□□□ -0.41
PHC3-213ENST00000491258 RTN4Q9NQC3 1192 aaKnown RBP12.5□□□□□ -0.41
PHC3-213ENST00000491258 PAXIP1Q6ZW49 1069 aaPredicted RBP12.48□□□□□ -0.41
PHC3-213ENST00000491258 ANKK1Q8NFD2 765 aa12.48□□□□□ -0.41
PHC3-213ENST00000491258 KIAA1468Q9P260 1216 aa12.47□□□□□ -0.41
PHC3-213ENST00000491258 NBR1Q14596 966 aa12.45□□□□□ -0.42
PHC3-213ENST00000491258 PDIA6Q15084 440 aa12.44□□□□□ -0.42
PHC3-213ENST00000491258 LAPTM4BQ86VI4 370 aa12.43□□□□□ -0.42
PHC3-213ENST00000491258 SEPT9Q9UHD8 586 aaPredicted RBP12.43□□□□□ -0.42
PHC3-213ENST00000491258 A0A0G2JS52 829 aa12.42□□□□□ -0.42
PHC3-213ENST00000491258 TRIM6-TRIM34B2RNG4 842 aa12.42□□□□□ -0.42
PHC3-213ENST00000491258 BCAMP50895 628 aa12.42□□□□□ -0.42
PHC3-213ENST00000491258 E2F4Q16254 413 aa12.42□□□□□ -0.42
PHC3-213ENST00000491258 WDR70Q9NW82 654 aa12.42□□□□□ -0.42
PHC3-213ENST00000491258 SPDYE16A6NNV3 312 aaPredicted RBP12.41□□□□□ -0.42
PHC3-213ENST00000491258 MAP3K7O43318 606 aa12.41□□□□□ -0.42
PHC3-213ENST00000491258 ONECUT3O60422 494 aaPredicted RBP12.41□□□□□ -0.42
PHC3-213ENST00000491258 EN1Q05925 392 aaPredicted RBP12.4□□□□□ -0.42
PHC3-213ENST00000491258 ZFRQ96KR1 1074 aaKnown RBP12.4□□□□□ -0.42
PHC3-213ENST00000491258 IRX2Q9BZI1 471 aaPredicted RBP12.4□□□□□ -0.42
PHC3-213ENST00000491258 TSR1Q2NL82 804 aaKnown RBP12.39□□□□□ -0.43
PHC3-213ENST00000491258 SOWAHBA6NEL2 793 aa12.37□□□□□ -0.43
PHC3-213ENST00000491258 GRXCR2A6NFK2 248 aa12.34□□□□□ -0.43
PHC3-213ENST00000491258 FAM98CQ17RN3 349 aaKnown RBP12.34□□□□□ -0.43
PHC3-213ENST00000491258 PACS2Q86VP3 889 aa12.32□□□□□ -0.44
PHC3-213ENST00000491258 WBP1LQ9NX94 342 aa12.32□□□□□ -0.44
PHC3-213ENST00000491258 TSKSQ9UJT2 592 aa12.32□□□□□ -0.44
PHC3-213ENST00000491258 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.31□□□□□ -0.44
PHC3-213ENST00000491258 LRCH3Q96II8 777 aa12.3□□□□□ -0.44
PHC3-213ENST00000491258 ARIH1Q9Y4X5 557 aaPredicted RBP12.3□□□□□ -0.44
PHC3-213ENST00000491258 PRIM1P49642 420 aaKnown RBP12.29□□□□□ -0.44
PHC3-213ENST00000491258 NYAP1Q6ZVC0 841 aa12.29□□□□□ -0.44
PHC3-213ENST00000491258 HPS5Q9UPZ3 1129 aa12.29□□□□□ -0.44
PHC3-213ENST00000491258 CDCA7LQ96GN5 454 aa12.28□□□□□ -0.44
PHC3-213ENST00000491258 ITGBL1O95965 494 aaPredicted RBP12.27□□□□□ -0.45
PHC3-213ENST00000491258 TSR3Q9UJK0 312 aaKnown RBP12.27□□□□□ -0.45
PHC3-213ENST00000491258 SMAPO00193 183 aa12.26□□□□□ -0.45
PHC3-213ENST00000491258 PRSS12P56730 875 aa12.26□□□□□ -0.45
PHC3-213ENST00000491258 CERKQ8TCT0 537 aa12.24□□□□□ -0.45
PHC3-213ENST00000491258 CDHR5Q9HBB8 845 aa12.23□□□□□ -0.45
PHC3-213ENST00000491258 FAM198AQ9UFP1 575 aa12.23□□□□□ -0.45
PHC3-213ENST00000491258 OSBPP22059 807 aa12.22□□□□□ -0.45
PHC3-213ENST00000491258 KCNC4Q03721 635 aa12.22□□□□□ -0.45
PHC3-213ENST00000491258 NBPF26B4DH59 902 aa12.21□□□□□ -0.45
PHC3-213ENST00000491258 PNMA3Q9UL41 463 aa12.21□□□□□ -0.45
PHC3-213ENST00000491258 PPP4CP60510 307 aa12.2□□□□□ -0.46
PHC3-213ENST00000491258 SAMD7Q7Z3H4 446 aa12.2□□□□□ -0.46
PHC3-213ENST00000491258 TATDN2Q93075 761 aa12.19□□□□□ -0.46
PHC3-213ENST00000491258 C3orf80F5H4A9 247 aa12.18□□□□□ -0.46
PHC3-213ENST00000491258 TSHZ2Q9NRE2 1034 aa12.16□□□□□ -0.46
PHC3-213ENST00000491258 NUDT18Q6ZVK8 323 aa12.15□□□□□ -0.46
PHC3-213ENST00000491258 RNF40O75150 1001 aa12.14□□□□□ -0.47
PHC3-213ENST00000491258 RBM27Q9P2N5 1060 aaKnown RBP12.13□□□□□ -0.47
PHC3-213ENST00000491258 HDGFP51858 240 aaKnown RBP12.11□□□□□ -0.47
PHC3-213ENST00000491258 PADI6Q6TGC4 694 aa12.11□□□□□ -0.47
PHC3-213ENST00000491258 Q6ZNB5 142 aa12.09□□□□□ -0.47
PHC3-213ENST00000491258 KCNV2Q8TDN2 545 aa12.08□□□□□ -0.48
PHC3-213ENST00000491258 ARHGEF1Q92888 912 aaKnown RBP12.08□□□□□ -0.48
PHC3-213ENST00000491258 NPDC1Q9NQX5 325 aaPredicted RBP12.08□□□□□ -0.48
PHC3-213ENST00000491258 MLLT3P42568 568 aaPredicted RBP12.07□□□□□ -0.48
PHC3-213ENST00000491258 TJAP1Q5JTD0 557 aa12.06□□□□□ -0.48
PHC3-213ENST00000491258 TTC13Q8NBP0 860 aa12.06□□□□□ -0.48
PHC3-213ENST00000491258 MTRQ99707 1265 aa12.05□□□□□ -0.48
PHC3-213ENST00000491258 SWT1Q5T5J6 900 aaKnown RBP12.04□□□□□ -0.48
PHC3-213ENST00000491258 IL21Q9HBE4 155 aa12.03□□□□□ -0.48
PHC3-213ENST00000491258 LCE2BO14633 110 aa12.02□□□□□ -0.49
PHC3-213ENST00000491258 APLP1P51693 650 aa12.01□□□□□ -0.49
PHC3-213ENST00000491258 SLF2Q8IX21 1173 aa12□□□□□ -0.49
PHC3-213ENST00000491258 NECTIN2Q92692 538 aa11.99□□□□□ -0.49
PHC3-213ENST00000491258 SLC4A3P48751 1232 aa11.98□□□□□ -0.49
PHC3-213ENST00000491258 LAPTM4AQ15012 233 aa11.98□□□□□ -0.49
PHC3-213ENST00000491258 ZNF516Q92618 1163 aa11.98□□□□□ -0.49
PHC3-213ENST00000491258 EYA1Q99502 592 aa11.97□□□□□ -0.49
PHC3-213ENST00000491258 NUTM2FA1L443 756 aa11.95□□□□□ -0.5
PHC3-213ENST00000491258 COPS2P61201 443 aa11.94□□□□□ -0.5
PHC3-213ENST00000491258 PTGDRQ13258 359 aa11.94□□□□□ -0.5
PHC3-213ENST00000491258 PPP1R18Q6NYC8 613 aa11.94□□□□□ -0.5
PHC3-213ENST00000491258 P3H3Q8IVL6 736 aa11.94□□□□□ -0.5
PHC3-213ENST00000491258 PRKD2Q9BZL6 878 aa11.92□□□□□ -0.5
PHC3-213ENST00000491258 DNAJB2P25686 324 aa11.9□□□□□ -0.5
PHC3-213ENST00000491258 NKX2-3Q8TAU0 364 aa11.9□□□□□ -0.5
PHC3-213ENST00000491258 RBM46Q8TBY0 533 aaKnown RBP11.9□□□□□ -0.5
PHC3-213ENST00000491258 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.9□□□□□ -0.5
PHC3-213ENST00000491258 SEMA3EO15041 775 aa11.88□□□□□ -0.51
PHC3-213ENST00000491258 TRAF7Q6Q0C0 670 aa11.88□□□□□ -0.51
PHC3-213ENST00000491258 ADGRG1Q9Y653 693 aa11.88□□□□□ -0.51
PHC3-213ENST00000491258 FAM161AQ3B820 660 aa11.87□□□□□ -0.51
PHC3-213ENST00000491258 PRR14Q9BWN1 585 aa11.87□□□□□ -0.51
PHC3-213ENST00000491258 GFRA3O60609 400 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms