RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 FAM135AQ9P2D6 1515 aa16.94■□□□□ 0.3
C9orf3-220ENST00000489318 A2MP01023 1474 aa16.93■□□□□ 0.3
C9orf3-220ENST00000489318 DHX29Q7Z478 1369 aaKnown RBP16.92■□□□□ 0.3
C9orf3-220ENST00000489318 ARHGEF40Q8TER5 1519 aa16.91■□□□□ 0.3
C9orf3-220ENST00000489318 COL17A1Q9UMD9 1497 aaPredicted RBP16.9■□□□□ 0.3
C9orf3-220ENST00000489318 TET3O43151 1660 aa16.88■□□□□ 0.29
C9orf3-220ENST00000489318 RAPGEF3O95398 923 aa16.88■□□□□ 0.29
C9orf3-220ENST00000489318 MPHOSPH9Q99550 1183 aa16.88■□□□□ 0.29
C9orf3-220ENST00000489318 YEATS2Q9ULM3 1422 aa16.87■□□□□ 0.29
C9orf3-220ENST00000489318 TRIM52Q96A61 297 aa16.87■□□□□ 0.29
C9orf3-220ENST00000489318 NUP155O75694 1391 aa16.87■□□□□ 0.29
C9orf3-220ENST00000489318 LMTK2Q8IWU2 1503 aa16.86■□□□□ 0.29
C9orf3-220ENST00000489318 ZC3H13Q5T200 1668 aaKnown RBP16.85■□□□□ 0.29
C9orf3-220ENST00000489318 AGLP35573 1532 aa16.85■□□□□ 0.29
C9orf3-220ENST00000489318 E9PCH4 1651 aa16.84■□□□□ 0.29
C9orf3-220ENST00000489318 ANKRD30BQ9BXX2 1392 aa16.83■□□□□ 0.28
C9orf3-220ENST00000489318 CEP152O94986 1710 aa16.82■□□□□ 0.28
C9orf3-220ENST00000489318 SIGLEC1Q9BZZ2 1709 aa16.82■□□□□ 0.28
C9orf3-220ENST00000489318 ATP10AO60312 1499 aa16.82■□□□□ 0.28
C9orf3-220ENST00000489318 SLC4A1APQ9BWU0 796 aaKnown RBP16.82■□□□□ 0.28
C9orf3-220ENST00000489318 EFCAB6Q5THR3 1501 aa16.8■□□□□ 0.28
C9orf3-220ENST00000489318 RPRD2Q5VT52 1461 aaKnown RBP16.8■□□□□ 0.28
C9orf3-220ENST00000489318 SPHKAPQ2M3C7 1700 aa16.79■□□□□ 0.28
C9orf3-220ENST00000489318 MYT1LQ9UL68 1186 aa16.78■□□□□ 0.28
C9orf3-220ENST00000489318 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
C9orf3-220ENST00000489318 CAMSAP1Q5T5Y3 1602 aa16.78■□□□□ 0.28
C9orf3-220ENST00000489318 ABCC3O15438 1527 aa16.77■□□□□ 0.28
C9orf3-220ENST00000489318 KANK1Q14678 1352 aa16.77■□□□□ 0.27
C9orf3-220ENST00000489318 PKD2Q13563 968 aa16.76■□□□□ 0.27
C9orf3-220ENST00000489318 TRPM2O94759 1503 aa16.75■□□□□ 0.27
C9orf3-220ENST00000489318 KIF3BO15066 747 aa16.75■□□□□ 0.27
C9orf3-220ENST00000489318 SIN3AQ96ST3 1273 aa16.74■□□□□ 0.27
C9orf3-220ENST00000489318 TRHP20396 242 aaPredicted RBP16.73■□□□□ 0.27
C9orf3-220ENST00000489318 PLA2R1Q13018 1463 aa16.73■□□□□ 0.27
C9orf3-220ENST00000489318 PTPRTO14522 1441 aa16.72■□□□□ 0.27
C9orf3-220ENST00000489318 FOXD1Q16676 465 aa16.72■□□□□ 0.27
C9orf3-220ENST00000489318 NEURL4Q96JN8 1562 aa16.7■□□□□ 0.26
C9orf3-220ENST00000489318 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.7■□□□□ 0.26
C9orf3-220ENST00000489318 ARHGAP31Q2M1Z3 1444 aa16.69■□□□□ 0.26
C9orf3-220ENST00000489318 TONSLQ96HA7 1378 aa16.68■□□□□ 0.26
C9orf3-220ENST00000489318 CLTCL1P53675 1640 aa16.67■□□□□ 0.26
C9orf3-220ENST00000489318 CCDC144AA2RUR9 1427 aa16.66■□□□□ 0.26
C9orf3-220ENST00000489318 NPATQ14207 1427 aa16.66■□□□□ 0.26
C9orf3-220ENST00000489318 NEUROD1Q13562 356 aa16.65■□□□□ 0.26
C9orf3-220ENST00000489318 CLTCQ00610 1675 aaKnown RBP16.65■□□□□ 0.26
C9orf3-220ENST00000489318 PIK3C2BO00750 1634 aa16.64■□□□□ 0.25
C9orf3-220ENST00000489318 MROH2AA6NES4 1674 aa16.64■□□□□ 0.25
C9orf3-220ENST00000489318 PREX1Q8TCU6 1659 aa16.64■□□□□ 0.25
C9orf3-220ENST00000489318 PPP6R1Q9UPN7 881 aa16.63■□□□□ 0.25
C9orf3-220ENST00000489318 CNTLNQ9NXG0 1405 aa16.62■□□□□ 0.25
C9orf3-220ENST00000489318 NOS1P29475 1434 aa16.62■□□□□ 0.25
C9orf3-220ENST00000489318 SYNMO15061 1565 aa16.61■□□□□ 0.25
C9orf3-220ENST00000489318 GGT6Q6P531 493 aa16.61■□□□□ 0.25
C9orf3-220ENST00000489318 KIF1BO60333 1816 aa16.61■□□□□ 0.25
C9orf3-220ENST00000489318 SPATA31E1Q6ZUB1 1445 aa16.6■□□□□ 0.25
C9orf3-220ENST00000489318 PPP1R15AO75807 674 aaPredicted RBP16.59■□□□□ 0.25
C9orf3-220ENST00000489318 WASHC2CQ9Y4E1 1318 aa16.59■□□□□ 0.25
C9orf3-220ENST00000489318 IFT172Q9UG01 1749 aa16.59■□□□□ 0.25
C9orf3-220ENST00000489318 ADGRB3O60242 1522 aa16.58■□□□□ 0.24
C9orf3-220ENST00000489318 SPATA31D1Q6ZQQ2 1576 aa16.58■□□□□ 0.24
C9orf3-220ENST00000489318 UGGT1Q9NYU2 1555 aa16.57■□□□□ 0.24
C9orf3-220ENST00000489318 UHRF1BP1Q6BDS2 1440 aa16.56■□□□□ 0.24
C9orf3-220ENST00000489318 FER1L4A9Z1Z3 1794 aa16.56■□□□□ 0.24
C9orf3-220ENST00000489318 L3MBTL2Q969R5 705 aa16.55■□□□□ 0.24
C9orf3-220ENST00000489318 ERVK-7P63135 1459 aa16.54■□□□□ 0.24
C9orf3-220ENST00000489318 CFAP65Q6ZU64 1925 aaKnown RBP16.53■□□□□ 0.24
C9orf3-220ENST00000489318 TRPM1Q7Z4N2 1603 aa16.51■□□□□ 0.23
C9orf3-220ENST00000489318 MADDQ8WXG6 1647 aa16.51■□□□□ 0.23
C9orf3-220ENST00000489318 PPLO60437 1756 aa16.5■□□□□ 0.23
C9orf3-220ENST00000489318 MYOM2P54296 1465 aa16.49■□□□□ 0.23
C9orf3-220ENST00000489318 RALGAPBQ86X10 1494 aa16.49■□□□□ 0.23
C9orf3-220ENST00000489318 C3P01024 1663 aa16.49■□□□□ 0.23
C9orf3-220ENST00000489318 KDM5AP29375 1690 aaKnown RBP16.49■□□□□ 0.23
C9orf3-220ENST00000489318 ADAMTSL3P82987 1691 aa16.49■□□□□ 0.23
C9orf3-220ENST00000489318 LAMC1P11047 1609 aa16.48■□□□□ 0.23
C9orf3-220ENST00000489318 TMEM131LA2VDJ0 1609 aa16.48■□□□□ 0.23
C9orf3-220ENST00000489318 PRAG1Q86YV5 1406 aa16.47■□□□□ 0.23
C9orf3-220ENST00000489318 KIAA1210Q9ULL0 1709 aa16.47■□□□□ 0.23
C9orf3-220ENST00000489318 MYO5BQ9ULV0 1848 aa16.46■□□□□ 0.23
C9orf3-220ENST00000489318 NRXN1Q9ULB1 1477 aa16.44■□□□□ 0.22
C9orf3-220ENST00000489318 ZMYM3Q14202 1370 aa16.44■□□□□ 0.22
C9orf3-220ENST00000489318 NEXMIFQ5QGS0 1516 aa16.44■□□□□ 0.22
C9orf3-220ENST00000489318 ARID4BQ4LE39 1312 aaPredicted RBP16.44■□□□□ 0.22
C9orf3-220ENST00000489318 NBPF8Q3BBV2 869 aa16.43■□□□□ 0.22
C9orf3-220ENST00000489318 STAC3Q96MF2 364 aa16.43■□□□□ 0.22
C9orf3-220ENST00000489318 MLECQ14165 292 aa16.42■□□□□ 0.22
C9orf3-220ENST00000489318 SLC52A1Q9NWF4 448 aa16.42■□□□□ 0.22
C9orf3-220ENST00000489318 RIMS1Q86UR5 1692 aaKnown RBP16.42■□□□□ 0.22
C9orf3-220ENST00000489318 GPRASP1Q5JY77 1395 aa16.39■□□□□ 0.21
C9orf3-220ENST00000489318 ZNF316A6NFI3 1004 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-220ENST00000489318 DCAF11Q8TEB1 546 aa16.39■□□□□ 0.21
C9orf3-220ENST00000489318 POLR1AO95602 1720 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-220ENST00000489318 UBR1Q8IWV7 1749 aa16.39■□□□□ 0.21
C9orf3-220ENST00000489318 ESF1Q9H501 851 aaKnown RBP16.38■□□□□ 0.21
C9orf3-220ENST00000489318 FBXO31Q5XUX0 539 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-220ENST00000489318 MYO3AQ8NEV4 1616 aa16.37■□□□□ 0.21
C9orf3-220ENST00000489318 IQGAP1P46940 1657 aa16.37■□□□□ 0.21
C9orf3-220ENST00000489318 ZFYVE9O95405 1425 aa16.36■□□□□ 0.21
C9orf3-220ENST00000489318 NLRP1Q9C000 1473 aa16.36■□□□□ 0.21
C9orf3-220ENST00000489318 RGL3Q3MIN7 710 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms