RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 ARHGAP33O14559 1287 aa9.51□□□□□ -0.89
RFC4-213ENST00000489028 EN1Q05925 392 aaPredicted RBP9.51□□□□□ -0.89
RFC4-213ENST00000489028 FBXW7Q969H0 707 aa9.51□□□□□ -0.89
RFC4-213ENST00000489028 PLSCR2Q9NRY7 297 aa9.5□□□□□ -0.89
RFC4-213ENST00000489028 LSM11P83369 360 aaKnown RBP eCLIP9.49□□□□□ -0.89
RFC4-213ENST00000489028 TSR1Q2NL82 804 aaKnown RBP9.49□□□□□ -0.89
RFC4-213ENST00000489028 COL9A1P20849 921 aa9.48□□□□□ -0.89
RFC4-213ENST00000489028 PTPREP23469 700 aa9.48□□□□□ -0.89
RFC4-213ENST00000489028 C6orf132Q5T0Z8 1188 aa9.48□□□□□ -0.89
RFC4-213ENST00000489028 MAP3K7O43318 606 aa9.47□□□□□ -0.89
RFC4-213ENST00000489028 CDHR5Q9HBB8 845 aa9.46□□□□□ -0.9
RFC4-213ENST00000489028 ANKRD13DQ6ZTN6 518 aa9.45□□□□□ -0.9
RFC4-213ENST00000489028 PPP1R3GB7ZBB8 358 aa9.43□□□□□ -0.9
RFC4-213ENST00000489028 ZBED2Q9BTP6 218 aa9.43□□□□□ -0.9
RFC4-213ENST00000489028 RBM26Q5T8P6 1007 aaKnown RBP9.42□□□□□ -0.9
RFC4-213ENST00000489028 PROX2Q3B8N5 592 aa9.41□□□□□ -0.9
RFC4-213ENST00000489028 ADGRD1Q6QNK2 874 aa9.41□□□□□ -0.9
RFC4-213ENST00000489028 SPNS2Q8IVW8 549 aa9.41□□□□□ -0.9
RFC4-213ENST00000489028 KCNH8Q96L42 1107 aa9.41□□□□□ -0.9
RFC4-213ENST00000489028 VPS9D1Q9Y2B5 631 aa9.41□□□□□ -0.9
RFC4-213ENST00000489028 NPDC1Q9NQX5 325 aaPredicted RBP9.4□□□□□ -0.9
RFC4-213ENST00000489028 TK2O00142 265 aa9.39□□□□□ -0.91
RFC4-213ENST00000489028 SLC4A5Q9BY07 1137 aa9.39□□□□□ -0.91
RFC4-213ENST00000489028 HRO43593 1189 aa9.38□□□□□ -0.91
RFC4-213ENST00000489028 NUTM2FA1L443 756 aa9.36□□□□□ -0.91
RFC4-213ENST00000489028 SMYD5Q6GMV2 418 aa9.36□□□□□ -0.91
RFC4-213ENST00000489028 FAM198AQ9UFP1 575 aa9.36□□□□□ -0.91
RFC4-213ENST00000489028 GPR37O15354 613 aa9.35□□□□□ -0.91
RFC4-213ENST00000489028 PTGDRQ13258 359 aa9.35□□□□□ -0.91
RFC4-213ENST00000489028 TSKSQ9UJT2 592 aa9.35□□□□□ -0.91
RFC4-213ENST00000489028 TRIM6-TRIM34B2RNG4 842 aa9.34□□□□□ -0.91
RFC4-213ENST00000489028 BHMG1C9JSJ3 638 aaPredicted RBP9.33□□□□□ -0.92
RFC4-213ENST00000489028 C3orf80F5H4A9 247 aa9.33□□□□□ -0.92
RFC4-213ENST00000489028 PRSS12P56730 875 aa9.33□□□□□ -0.92
RFC4-213ENST00000489028 CDCA7LQ96GN5 454 aa9.33□□□□□ -0.92
RFC4-213ENST00000489028 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.32□□□□□ -0.92
RFC4-213ENST00000489028 CERKQ8TCT0 537 aa9.32□□□□□ -0.92
RFC4-213ENST00000489028 KIAA1468Q9P260 1216 aa9.32□□□□□ -0.92
RFC4-213ENST00000489028 MMRN1Q13201 1228 aa9.31□□□□□ -0.92
RFC4-213ENST00000489028 PADI6Q6TGC4 694 aa9.31□□□□□ -0.92
RFC4-213ENST00000489028 TTC13Q8NBP0 860 aa9.31□□□□□ -0.92
RFC4-213ENST00000489028 RABGEF1Q9UJ41 708 aa9.31□□□□□ -0.92
RFC4-213ENST00000489028 ONECUT3O60422 494 aaPredicted RBP9.29□□□□□ -0.92
RFC4-213ENST00000489028 MYT1LQ9UL68 1186 aa9.29□□□□□ -0.92
RFC4-213ENST00000489028 FCHSD2O94868 740 aa9.28□□□□□ -0.92
RFC4-213ENST00000489028 LMOD2Q6P5Q4 547 aa9.28□□□□□ -0.92
RFC4-213ENST00000489028 GPIHBP1Q8IV16 184 aa9.28□□□□□ -0.92
RFC4-213ENST00000489028 RBM27Q9P2N5 1060 aaKnown RBP9.28□□□□□ -0.92
RFC4-213ENST00000489028 FECHP22830 423 aa9.27□□□□□ -0.93
RFC4-213ENST00000489028 SEPT9Q9UHD8 586 aaPredicted RBP9.27□□□□□ -0.93
RFC4-213ENST00000489028 SMAPO00193 183 aa9.26□□□□□ -0.93
RFC4-213ENST00000489028 TULP1O00294 542 aaPredicted RBP9.25□□□□□ -0.93
RFC4-213ENST00000489028 BCANQ96GW7 911 aa9.25□□□□□ -0.93
RFC4-213ENST00000489028 NBPF3Q9H094 633 aa9.25□□□□□ -0.93
RFC4-213ENST00000489028 HIC1Q14526 733 aa9.24□□□□□ -0.93
RFC4-213ENST00000489028 FAM161AQ3B820 660 aa9.24□□□□□ -0.93
RFC4-213ENST00000489028 PACS2Q86VP3 889 aa9.24□□□□□ -0.93
RFC4-213ENST00000489028 MRPL50Q8N5N7 158 aaKnown RBP9.24□□□□□ -0.93
RFC4-213ENST00000489028 RNF166Q96A37 237 aaPredicted RBP9.24□□□□□ -0.93
RFC4-213ENST00000489028 GNPATO15228 680 aa9.23□□□□□ -0.93
RFC4-213ENST00000489028 TATDN2Q93075 761 aa9.23□□□□□ -0.93
RFC4-213ENST00000489028 NUDT18Q6ZVK8 323 aa9.22□□□□□ -0.93
RFC4-213ENST00000489028 PNMA3Q9UL41 463 aa9.22□□□□□ -0.93
RFC4-213ENST00000489028 ADGRG1Q9Y653 693 aa9.22□□□□□ -0.93
RFC4-213ENST00000489028 NBPF26B4DH59 902 aa9.21□□□□□ -0.94
RFC4-213ENST00000489028 KCTD12Q96CX2 325 aaKnown RBP9.21□□□□□ -0.94
RFC4-213ENST00000489028 STAC3Q96MF2 364 aa9.21□□□□□ -0.94
RFC4-213ENST00000489028 FAM98CQ17RN3 349 aaKnown RBP9.2□□□□□ -0.94
RFC4-213ENST00000489028 LAPTM4BQ86VI4 370 aa9.2□□□□□ -0.94
RFC4-213ENST00000489028 EYA1Q99502 592 aa9.2□□□□□ -0.94
RFC4-213ENST00000489028 ZFRQ96KR1 1074 aaKnown RBP9.19□□□□□ -0.94
RFC4-213ENST00000489028 ZC3H15Q8WU90 426 aaKnown RBP9.18□□□□□ -0.94
RFC4-213ENST00000489028 WNT2BQ93097 391 aa9.17□□□□□ -0.94
RFC4-213ENST00000489028 GOLGA8CPA6NN73 597 aa9.16□□□□□ -0.94
RFC4-213ENST00000489028 THSD4Q6ZMP0 1018 aa9.16□□□□□ -0.94
RFC4-213ENST00000489028 BCAMP50895 628 aa9.15□□□□□ -0.94
RFC4-213ENST00000489028 ZMYND10O75800 440 aa9.14□□□□□ -0.95
RFC4-213ENST00000489028 ANKK1Q8NFD2 765 aa9.14□□□□□ -0.95
RFC4-213ENST00000489028 PXYLP1Q8TE99 480 aa9.14□□□□□ -0.95
RFC4-213ENST00000489028 MAP2K5Q13163 448 aa9.13□□□□□ -0.95
RFC4-213ENST00000489028 SAMD7Q7Z3H4 446 aa9.13□□□□□ -0.95
RFC4-213ENST00000489028 METTL3Q86U44 580 aaKnown RBP9.13□□□□□ -0.95
RFC4-213ENST00000489028 RBM46Q8TBY0 533 aaKnown RBP9.13□□□□□ -0.95
RFC4-213ENST00000489028 PHOX2BQ99453 314 aa9.13□□□□□ -0.95
RFC4-213ENST00000489028 RCCD1A6NED2 376 aa9.12□□□□□ -0.95
RFC4-213ENST00000489028 SOWAHBA6NEL2 793 aa9.12□□□□□ -0.95
RFC4-213ENST00000489028 BARGINQ6ZT62 677 aa9.12□□□□□ -0.95
RFC4-213ENST00000489028 NLRP7Q8WX94 980 aa9.12□□□□□ -0.95
RFC4-213ENST00000489028 SWT1Q5T5J6 900 aaKnown RBP9.11□□□□□ -0.95
RFC4-213ENST00000489028 IRF6O14896 467 aa9.1□□□□□ -0.95
RFC4-213ENST00000489028 OATP04181 439 aa9.1□□□□□ -0.95
RFC4-213ENST00000489028 PTPN5P54829 565 aa9.1□□□□□ -0.95
RFC4-213ENST00000489028 CCDC102AQ96A19 550 aa9.1□□□□□ -0.95
RFC4-213ENST00000489028 LRCH3Q96II8 777 aa9.1□□□□□ -0.95
RFC4-213ENST00000489028 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.1□□□□□ -0.95
RFC4-213ENST00000489028 DNAJB2P25686 324 aa9.09□□□□□ -0.95
RFC4-213ENST00000489028 TMEM134Q9H6X4 195 aa9.09□□□□□ -0.95
RFC4-213ENST00000489028 MINK1Q8N4C8 1332 aaPredicted RBP9.08□□□□□ -0.96
RFC4-213ENST00000489028 WBP1LQ9NX94 342 aa9.07□□□□□ -0.96
RFC4-213ENST00000489028 HCSTQ9UBK5 93 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms