RNA–Protein interactions for RNA: ENST00000487689.1

UBR3-211, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 3

Gene UBR3, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-211ENST00000487689 SOWAHBA6NEL2 793 aa11.57□□□□□ -0.56
UBR3-211ENST00000487689 LAPTM4BQ86VI4 370 aa11.56□□□□□ -0.56
UBR3-211ENST00000487689 EMILIN3Q9NT22 766 aa11.55□□□□□ -0.56
UBR3-211ENST00000487689 KIAA1468Q9P260 1216 aa11.54□□□□□ -0.56
UBR3-211ENST00000487689 TYW1BQ6NUM6 668 aa11.53□□□□□ -0.56
UBR3-211ENST00000487689 NYAP1Q6ZVC0 841 aa11.53□□□□□ -0.56
UBR3-211ENST00000487689 ZFRQ96KR1 1074 aaKnown RBP11.53□□□□□ -0.56
UBR3-211ENST00000487689 WBP1LQ9NX94 342 aa11.53□□□□□ -0.56
UBR3-211ENST00000487689 KCNC4Q03721 635 aa11.52□□□□□ -0.57
UBR3-211ENST00000487689 MFSD10Q14728 455 aa11.52□□□□□ -0.57
UBR3-211ENST00000487689 FBXW7Q969H0 707 aa11.52□□□□□ -0.57
UBR3-211ENST00000487689 PHF14O94880 888 aa11.51□□□□□ -0.57
UBR3-211ENST00000487689 SEPT9Q9UHD8 586 aaPredicted RBP11.5□□□□□ -0.57
UBR3-211ENST00000487689 GTPBP6O43824 516 aaPredicted RBP11.48□□□□□ -0.57
UBR3-211ENST00000487689 ONECUT3O60422 494 aaPredicted RBP11.46□□□□□ -0.57
UBR3-211ENST00000487689 C6orf132Q5T0Z8 1188 aa11.44□□□□□ -0.58
UBR3-211ENST00000487689 TRIM6-TRIM34B2RNG4 842 aa11.43□□□□□ -0.58
UBR3-211ENST00000487689 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.43□□□□□ -0.58
UBR3-211ENST00000487689 HPS5Q9UPZ3 1129 aa11.43□□□□□ -0.58
UBR3-211ENST00000487689 LAPTM4AQ15012 233 aa11.42□□□□□ -0.58
UBR3-211ENST00000487689 FAM98CQ17RN3 349 aaKnown RBP11.42□□□□□ -0.58
UBR3-211ENST00000487689 TSR3Q9UJK0 312 aaKnown RBP11.42□□□□□ -0.58
UBR3-211ENST00000487689 LCE2BO14633 110 aa11.41□□□□□ -0.58
UBR3-211ENST00000487689 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
UBR3-211ENST00000487689 LRCH3Q96II8 777 aa11.41□□□□□ -0.58
UBR3-211ENST00000487689 EPAS1Q99814 870 aa11.41□□□□□ -0.58
UBR3-211ENST00000487689 GFRA3O60609 400 aa11.39□□□□□ -0.59
UBR3-211ENST00000487689 RBM33Q96EV2 1170 aaKnown RBP11.38□□□□□ -0.59
UBR3-211ENST00000487689 TRAF7Q6Q0C0 670 aa11.37□□□□□ -0.59
UBR3-211ENST00000487689 CADPS2Q86UW7 1296 aa11.36□□□□□ -0.59
UBR3-211ENST00000487689 DPYSL4O14531 572 aa11.34□□□□□ -0.59
UBR3-211ENST00000487689 PPP4CP60510 307 aa11.32□□□□□ -0.6
UBR3-211ENST00000487689 DDX12PQ92771 950 aa11.32□□□□□ -0.6
UBR3-211ENST00000487689 CAMK2BQ13554 666 aa11.31□□□□□ -0.6
UBR3-211ENST00000487689 PRKD2Q9BZL6 878 aa11.31□□□□□ -0.6
UBR3-211ENST00000487689 TSKSQ9UJT2 592 aa11.31□□□□□ -0.6
UBR3-211ENST00000487689 TJAP1Q5JTD0 557 aa11.3□□□□□ -0.6
UBR3-211ENST00000487689 PACS2Q86VP3 889 aa11.3□□□□□ -0.6
UBR3-211ENST00000487689 NRG2O14511 850 aaPredicted RBP11.27□□□□□ -0.61
UBR3-211ENST00000487689 TSR1Q2NL82 804 aaKnown RBP11.26□□□□□ -0.61
UBR3-211ENST00000487689 MAP3K7O43318 606 aa11.25□□□□□ -0.61
UBR3-211ENST00000487689 EN1Q05925 392 aaPredicted RBP11.25□□□□□ -0.61
UBR3-211ENST00000487689 NBR1Q14596 966 aa11.25□□□□□ -0.61
UBR3-211ENST00000487689 SAMD7Q7Z3H4 446 aa11.25□□□□□ -0.61
UBR3-211ENST00000487689 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
UBR3-211ENST00000487689 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.25□□□□□ -0.61
UBR3-211ENST00000487689 SMAPO00193 183 aa11.24□□□□□ -0.61
UBR3-211ENST00000487689 PPP1R18Q6NYC8 613 aa11.24□□□□□ -0.61
UBR3-211ENST00000487689 MTRQ99707 1265 aa11.24□□□□□ -0.61
UBR3-211ENST00000487689 IL21Q9HBE4 155 aa11.23□□□□□ -0.61
UBR3-211ENST00000487689 V9GY48 417 aaPredicted RBP11.21□□□□□ -0.61
UBR3-211ENST00000487689 CDCA7LQ96GN5 454 aa11.2□□□□□ -0.62
UBR3-211ENST00000487689 RTN4Q9NQC3 1192 aaKnown RBP11.2□□□□□ -0.62
UBR3-211ENST00000487689 ZNF516Q92618 1163 aa11.19□□□□□ -0.62
UBR3-211ENST00000487689 FAM198AQ9UFP1 575 aa11.19□□□□□ -0.62
UBR3-211ENST00000487689 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.18□□□□□ -0.62
UBR3-211ENST00000487689 C3orf80F5H4A9 247 aa11.17□□□□□ -0.62
UBR3-211ENST00000487689 PRSS12P56730 875 aa11.17□□□□□ -0.62
UBR3-211ENST00000487689 ZNF787Q6DD87 383 aa11.17□□□□□ -0.62
UBR3-211ENST00000487689 SPRYD3Q8NCJ5 442 aa11.16□□□□□ -0.62
UBR3-211ENST00000487689 TATDN2Q93075 761 aa11.15□□□□□ -0.62
UBR3-211ENST00000487689 PNMA3Q9UL41 463 aa11.15□□□□□ -0.62
UBR3-211ENST00000487689 PDZRN3Q9UPQ7 1066 aa11.15□□□□□ -0.62
UBR3-211ENST00000487689 RNF40O75150 1001 aa11.14□□□□□ -0.63
UBR3-211ENST00000487689 PDIA6Q15084 440 aa11.14□□□□□ -0.63
UBR3-211ENST00000487689 NBPF26B4DH59 902 aa11.13□□□□□ -0.63
UBR3-211ENST00000487689 APLP1P51693 650 aa11.12□□□□□ -0.63
UBR3-211ENST00000487689 NKX2-3Q8TAU0 364 aa11.12□□□□□ -0.63
UBR3-211ENST00000487689 CERKQ8TCT0 537 aa11.11□□□□□ -0.63
UBR3-211ENST00000487689 SPDYE16A6NNV3 312 aaPredicted RBP11.1□□□□□ -0.63
UBR3-211ENST00000487689 PRIM1P49642 420 aaKnown RBP11.1□□□□□ -0.63
UBR3-211ENST00000487689 HDGFP51858 240 aaKnown RBP11.08□□□□□ -0.64
UBR3-211ENST00000487689 NUDT18Q6ZVK8 323 aa11.08□□□□□ -0.64
UBR3-211ENST00000487689 ZNF775Q96BV0 537 aaPredicted RBP11.08□□□□□ -0.64
UBR3-211ENST00000487689 GGCXP38435 758 aa11.07□□□□□ -0.64
UBR3-211ENST00000487689 CFAP44Q96MT7 982 aa11.07□□□□□ -0.64
UBR3-211ENST00000487689 GRXCR2A6NFK2 248 aa11.05□□□□□ -0.64
UBR3-211ENST00000487689 COPS2P61201 443 aa11.05□□□□□ -0.64
UBR3-211ENST00000487689 PAXIP1Q6ZW49 1069 aaPredicted RBP11.04□□□□□ -0.64
UBR3-211ENST00000487689 CDHR5Q9HBB8 845 aa11.04□□□□□ -0.64
UBR3-211ENST00000487689 SWT1Q5T5J6 900 aaKnown RBP11.01□□□□□ -0.65
UBR3-211ENST00000487689 NECTIN2Q92692 538 aa11.01□□□□□ -0.65
UBR3-211ENST00000487689 TMUB1Q9BVT8 246 aa11.01□□□□□ -0.65
UBR3-211ENST00000487689 WDR70Q9NW82 654 aa11□□□□□ -0.65
UBR3-211ENST00000487689 RBM27Q9P2N5 1060 aaKnown RBP11□□□□□ -0.65
UBR3-211ENST00000487689 SLF2Q8IX21 1173 aa10.99□□□□□ -0.65
UBR3-211ENST00000487689 ZPR1O75312 459 aa10.98□□□□□ -0.65
UBR3-211ENST00000487689 TRIM67Q6ZTA4 783 aa10.98□□□□□ -0.65
UBR3-211ENST00000487689 OSBPP22059 807 aa10.97□□□□□ -0.65
UBR3-211ENST00000487689 SLC19A1P41440 591 aa10.95□□□□□ -0.66
UBR3-211ENST00000487689 E2F4Q16254 413 aa10.95□□□□□ -0.66
UBR3-211ENST00000487689 PKDCCQ504Y2 493 aa10.94□□□□□ -0.66
UBR3-211ENST00000487689 PADI6Q6TGC4 694 aa10.94□□□□□ -0.66
UBR3-211ENST00000487689 TTC13Q8NBP0 860 aa10.94□□□□□ -0.66
UBR3-211ENST00000487689 EMID1Q96A84 441 aaPredicted RBP10.94□□□□□ -0.66
UBR3-211ENST00000487689 RNF223E7ERA6 249 aa10.93□□□□□ -0.66
UBR3-211ENST00000487689 MYT1Q01538 1121 aa10.93□□□□□ -0.66
UBR3-211ENST00000487689 ARIH1Q9Y4X5 557 aaPredicted RBP10.92□□□□□ -0.66
UBR3-211ENST00000487689 PCDHB3Q9Y5E6 796 aa10.92□□□□□ -0.66
UBR3-211ENST00000487689 SLC4A3P48751 1232 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms