RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 PANK3Q9H999 370 aa16.11■□□□□ 0.17
SHROOM3-208ENST00000486758 NUTM2DQ5VT03 806 aaPredicted RBP16.11■□□□□ 0.17
SHROOM3-208ENST00000486758 SPRYD3Q8NCJ5 442 aa16.11■□□□□ 0.17
SHROOM3-208ENST00000486758 ABCC5O15440 1437 aa16.11■□□□□ 0.17
SHROOM3-208ENST00000486758 GSE1Q14687 1217 aa16.1■□□□□ 0.17
SHROOM3-208ENST00000486758 CCDC146Q8IYE0 955 aa16.1■□□□□ 0.17
SHROOM3-208ENST00000486758 ANKRD30BQ9BXX2 1392 aa16.1■□□□□ 0.17
SHROOM3-208ENST00000486758 KIF15Q9NS87 1388 aa16.1■□□□□ 0.17
SHROOM3-208ENST00000486758 IQGAP2Q13576 1575 aa16.1■□□□□ 0.17
SHROOM3-208ENST00000486758 SLKQ9H2G2 1235 aaPredicted RBP16.1■□□□□ 0.17
SHROOM3-208ENST00000486758 TMF1P82094 1093 aa16.09■□□□□ 0.17
SHROOM3-208ENST00000486758 CRBNQ96SW2 442 aa16.08■□□□□ 0.17
SHROOM3-208ENST00000486758 PTPRGP23470 1445 aa16.08■□□□□ 0.17
SHROOM3-208ENST00000486758 CHD1O14646 1710 aa16.08■□□□□ 0.16
SHROOM3-208ENST00000486758 KTN1Q86UP2 1357 aaKnown RBP16.07■□□□□ 0.16
SHROOM3-208ENST00000486758 NFKBIBQ15653 356 aa16.07■□□□□ 0.16
SHROOM3-208ENST00000486758 FRAT1Q92837 279 aaPredicted RBP16.07■□□□□ 0.16
SHROOM3-208ENST00000486758 HECW1Q76N89 1606 aa16.06■□□□□ 0.16
SHROOM3-208ENST00000486758 MIA2Q96PC5 1412 aa16.05■□□□□ 0.16
SHROOM3-208ENST00000486758 GGT6Q6P531 493 aa16.05■□□□□ 0.16
SHROOM3-208ENST00000486758 KIF3BO15066 747 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 CTTNBP2Q8WZ74 1663 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 CCDC144AA2RUR9 1427 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 NCOA1Q15788 1441 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 GRIN2AQ12879 1464 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 NLRP13Q86W25 1043 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 ADAMTS12P58397 1594 aa16.04■□□□□ 0.16
SHROOM3-208ENST00000486758 GZF1Q9H116 711 aaPredicted RBP16.03■□□□□ 0.16
SHROOM3-208ENST00000486758 MYBBP1AQ9BQG0 1328 aaKnown RBP16.02■□□□□ 0.16
SHROOM3-208ENST00000486758 TROQ12816 1431 aaPredicted RBP16.02■□□□□ 0.16
SHROOM3-208ENST00000486758 UGGT2Q9NYU1 1516 aa16.02■□□□□ 0.16
SHROOM3-208ENST00000486758 AFAP1Q8N556 730 aa16.02■□□□□ 0.15
SHROOM3-208ENST00000486758 NAP1L5Q96NT1 182 aaPredicted RBP16.02■□□□□ 0.15
SHROOM3-208ENST00000486758 BACH2Q9BYV9 841 aa16.02■□□□□ 0.15
SHROOM3-208ENST00000486758 USP35Q9P2H5 1018 aa16.02■□□□□ 0.15
SHROOM3-208ENST00000486758 RALBP1Q15311 655 aa16.01■□□□□ 0.15
SHROOM3-208ENST00000486758 PNISRQ8TF01 805 aaKnown RBP16.01■□□□□ 0.15
SHROOM3-208ENST00000486758 FRAT2O75474 233 aaPredicted RBP16■□□□□ 0.15
SHROOM3-208ENST00000486758 KIAA1107Q9UPP5 1409 aa16■□□□□ 0.15
SHROOM3-208ENST00000486758 RIMBP3CA6NJZ7 1639 aa16■□□□□ 0.15
SHROOM3-208ENST00000486758 RIMBP3BA6NNM3 1639 aa16■□□□□ 0.15
SHROOM3-208ENST00000486758 RIMBP3Q9UFD9 1639 aa16■□□□□ 0.15
SHROOM3-208ENST00000486758 EFCAB2Q5VUJ9 269 aa15.99■□□□□ 0.15
SHROOM3-208ENST00000486758 ESF1Q9H501 851 aaKnown RBP15.99■□□□□ 0.15
SHROOM3-208ENST00000486758 C9orf84Q5VXU9 1444 aa15.98■□□□□ 0.15
SHROOM3-208ENST00000486758 KIAA0586Q9BVV6 1533 aa15.98■□□□□ 0.15
SHROOM3-208ENST00000486758 UBE2Q2Q8WVN8 375 aa15.98■□□□□ 0.15
SHROOM3-208ENST00000486758 SMG6Q86US8 1419 aaKnown RBP15.98■□□□□ 0.15
SHROOM3-208ENST00000486758 PLEKHG5O94827 1062 aa15.98■□□□□ 0.15
SHROOM3-208ENST00000486758 CAMSAP2Q08AD1 1489 aa15.98■□□□□ 0.15
SHROOM3-208ENST00000486758 DHX29Q7Z478 1369 aaKnown RBP15.97■□□□□ 0.15
SHROOM3-208ENST00000486758 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.97■□□□□ 0.15
SHROOM3-208ENST00000486758 MLECQ14165 292 aa15.97■□□□□ 0.15
SHROOM3-208ENST00000486758 STAG3Q9UJ98 1225 aa15.97■□□□□ 0.15
SHROOM3-208ENST00000486758 C20orf194Q5TEA3 1177 aa15.96■□□□□ 0.15
SHROOM3-208ENST00000486758 RRP7AQ9Y3A4 280 aaKnown RBP15.96■□□□□ 0.15
SHROOM3-208ENST00000486758 RPRD2Q5VT52 1461 aaKnown RBP15.96■□□□□ 0.15
SHROOM3-208ENST00000486758 SPAG9O60271 1321 aaKnown RBP15.96■□□□□ 0.15
SHROOM3-208ENST00000486758 NUP153P49790 1475 aaKnown RBP15.96■□□□□ 0.14
SHROOM3-208ENST00000486758 STK26Q9P289 416 aa15.95■□□□□ 0.14
SHROOM3-208ENST00000486758 UPF2Q9HAU5 1272 aaKnown RBP15.95■□□□□ 0.14
SHROOM3-208ENST00000486758 TRAK1Q9UPV9 953 aa15.94■□□□□ 0.14
SHROOM3-208ENST00000486758 ADAMTS8Q9UP79 889 aa15.92■□□□□ 0.14
SHROOM3-208ENST00000486758 ROCK1Q13464 1354 aa15.91■□□□□ 0.14
SHROOM3-208ENST00000486758 BCORL1Q5H9F3 1711 aa15.91■□□□□ 0.14
SHROOM3-208ENST00000486758 BCL2L13Q9BXK5 485 aa15.91■□□□□ 0.14
SHROOM3-208ENST00000486758 NUP160Q12769 1436 aa15.91■□□□□ 0.14
SHROOM3-208ENST00000486758 CEP170Q5SW79 1584 aa15.91■□□□□ 0.14
SHROOM3-208ENST00000486758 SPATA31E1Q6ZUB1 1445 aa15.9■□□□□ 0.14
SHROOM3-208ENST00000486758 GPATCH8Q9UKJ3 1502 aaKnown RBP15.9■□□□□ 0.14
SHROOM3-208ENST00000486758 APAF1O14727 1248 aa15.89■□□□□ 0.13
SHROOM3-208ENST00000486758 MS4A1P11836 297 aa15.89■□□□□ 0.13
SHROOM3-208ENST00000486758 BECN1Q14457 450 aa15.89■□□□□ 0.13
SHROOM3-208ENST00000486758 CLUAP1Q96AJ1 413 aa15.89■□□□□ 0.13
SHROOM3-208ENST00000486758 U2SURPO15042 1029 aaKnown RBP15.89■□□□□ 0.13
SHROOM3-208ENST00000486758 GLIPR1L2Q4G1C9 344 aa15.89■□□□□ 0.13
SHROOM3-208ENST00000486758 CDCA8Q53HL2 280 aa15.88■□□□□ 0.13
SHROOM3-208ENST00000486758 TEX14Q8IWB6 1497 aa15.88■□□□□ 0.13
SHROOM3-208ENST00000486758 FAM161AQ3B820 660 aa15.87■□□□□ 0.13
SHROOM3-208ENST00000486758 CFAP70Q5T0N1 1121 aa15.87■□□□□ 0.13
SHROOM3-208ENST00000486758 HSP90AA1P07900 732 aaKnown RBP15.86■□□□□ 0.13
SHROOM3-208ENST00000486758 MORC1Q86VD1 984 aa15.86■□□□□ 0.13
SHROOM3-208ENST00000486758 ARHGAP5Q13017 1502 aa15.86■□□□□ 0.13
SHROOM3-208ENST00000486758 CLASP1Q7Z460 1538 aa15.85■□□□□ 0.13
SHROOM3-208ENST00000486758 SAMD9Q5K651 1589 aa15.85■□□□□ 0.13
SHROOM3-208ENST00000486758 TMEM132EQ6IEE7 984 aa15.85■□□□□ 0.13
SHROOM3-208ENST00000486758 RSPH4AQ5TD94 716 aa15.85■□□□□ 0.13
SHROOM3-208ENST00000486758 GOLGA2Q08379 1002 aa15.84■□□□□ 0.13
SHROOM3-208ENST00000486758 DISP1Q96F81 1524 aa15.82■□□□□ 0.12
SHROOM3-208ENST00000486758 PDE3BQ13370 1112 aa15.82■□□□□ 0.12
SHROOM3-208ENST00000486758 TCOF1Q13428 1488 aaKnown RBP15.82■□□□□ 0.12
SHROOM3-208ENST00000486758 VSIG10Q8N0Z9 540 aa15.82■□□□□ 0.12
SHROOM3-208ENST00000486758 PKNOX2Q96KN3 472 aa15.82■□□□□ 0.12
SHROOM3-208ENST00000486758 POGKQ9P215 609 aa15.82■□□□□ 0.12
SHROOM3-208ENST00000486758 SRPK2P78362 688 aaKnown RBP15.81■□□□□ 0.12
SHROOM3-208ENST00000486758 PODXL2Q9NZ53 605 aa15.81■□□□□ 0.12
SHROOM3-208ENST00000486758 CENPQQ7L2Z9 268 aaPredicted RBP15.8■□□□□ 0.12
SHROOM3-208ENST00000486758 KANK1Q14678 1352 aa15.8■□□□□ 0.12
SHROOM3-208ENST00000486758 ARID3AQ99856 593 aa15.8■□□□□ 0.12
SHROOM3-208ENST00000486758 PNNQ9H307 717 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms