RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 NESP48681 1621 aa13.86□□□□□ -0.19
CCDC171-208ENST00000486641 KIF21AQ7Z4S6 1674 aa13.86□□□□□ -0.19
CCDC171-208ENST00000486641 RGS3P49796 1198 aa13.86□□□□□ -0.19
CCDC171-208ENST00000486641 UHRF1BP1Q6BDS2 1440 aa13.86□□□□□ -0.19
CCDC171-208ENST00000486641 PKD2Q13563 968 aa13.85□□□□□ -0.19
CCDC171-208ENST00000486641 GLIPR1L2Q4G1C9 344 aa13.84□□□□□ -0.19
CCDC171-208ENST00000486641 BLMP54132 1417 aaPredicted RBP13.83□□□□□ -0.2
CCDC171-208ENST00000486641 PER1O15534 1290 aaPredicted RBP13.82□□□□□ -0.2
CCDC171-208ENST00000486641 KDM2AQ9Y2K7 1162 aa13.82□□□□□ -0.2
CCDC171-208ENST00000486641 L1TD1Q5T7N2 865 aaKnown RBP13.81□□□□□ -0.2
CCDC171-208ENST00000486641 USP19O94966 1318 aa13.81□□□□□ -0.2
CCDC171-208ENST00000486641 VSIG10Q8N0Z9 540 aa13.81□□□□□ -0.2
CCDC171-208ENST00000486641 TDRD9Q8NDG6 1382 aaKnown RBP13.81□□□□□ -0.2
CCDC171-208ENST00000486641 ZMYND15Q9H091 742 aa13.8□□□□□ -0.2
CCDC171-208ENST00000486641 ZMYM4Q5VZL5 1548 aa13.8□□□□□ -0.2
CCDC171-208ENST00000486641 CC2D1BQ5T0F9 858 aaKnown RBP13.8□□□□□ -0.2
CCDC171-208ENST00000486641 INSRP06213 1382 aa13.8□□□□□ -0.2
CCDC171-208ENST00000486641 NAP1L5Q96NT1 182 aaPredicted RBP13.78□□□□□ -0.2
CCDC171-208ENST00000486641 DUSP27Q5VZP5 1158 aa13.78□□□□□ -0.2
CCDC171-208ENST00000486641 SLKQ9H2G2 1235 aaPredicted RBP13.78□□□□□ -0.2
CCDC171-208ENST00000486641 PLEKHH2Q8IVE3 1493 aa13.77□□□□□ -0.2
CCDC171-208ENST00000486641 SEC24BO95487 1268 aa13.77□□□□□ -0.21
CCDC171-208ENST00000486641 XRCC6P12956 609 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC171-208ENST00000486641 ARXQ96QS3 562 aa13.76□□□□□ -0.21
CCDC171-208ENST00000486641 ADAMTS8Q9UP79 889 aa13.76□□□□□ -0.21
CCDC171-208ENST00000486641 LAMC3Q9Y6N6 1575 aa13.76□□□□□ -0.21
CCDC171-208ENST00000486641 HSP90AA2PQ14568 343 aaPredicted RBP13.75□□□□□ -0.21
CCDC171-208ENST00000486641 WDR62O43379 1518 aa13.75□□□□□ -0.21
CCDC171-208ENST00000486641 PNNQ9H307 717 aaKnown RBP13.75□□□□□ -0.21
CCDC171-208ENST00000486641 GAPVD1Q14C86 1478 aa13.75□□□□□ -0.21
CCDC171-208ENST00000486641 KIAA0586Q9BVV6 1533 aa13.75□□□□□ -0.21
CCDC171-208ENST00000486641 ZNF608Q9ULD9 1512 aaPredicted RBP13.75□□□□□ -0.21
CCDC171-208ENST00000486641 CLCN1P35523 988 aa13.74□□□□□ -0.21
CCDC171-208ENST00000486641 BECN1Q14457 450 aa13.74□□□□□ -0.21
CCDC171-208ENST00000486641 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.74□□□□□ -0.21
CCDC171-208ENST00000486641 ANTXR1Q9H6X2 564 aa13.74□□□□□ -0.21
CCDC171-208ENST00000486641 ARHGEF12Q9NZN5 1544 aa13.74□□□□□ -0.21
CCDC171-208ENST00000486641 VIRMAQ69YN4 1812 aaKnown RBP13.73□□□□□ -0.21
CCDC171-208ENST00000486641 PLEKHH1Q9ULM0 1364 aa13.73□□□□□ -0.21
CCDC171-208ENST00000486641 HSP90AA1P07900 732 aaKnown RBP13.73□□□□□ -0.21
CCDC171-208ENST00000486641 RRP9O43818 475 aaKnown RBP13.73□□□□□ -0.21
CCDC171-208ENST00000486641 IGHDP01880 384 aa13.73□□□□□ -0.21
CCDC171-208ENST00000486641 GOLGA6L3A6NEY3 463 aa13.72□□□□□ -0.21
CCDC171-208ENST00000486641 PANK2Q9BZ23 570 aa13.72□□□□□ -0.21
CCDC171-208ENST00000486641 FSD2A1L4K1 749 aa13.72□□□□□ -0.21
CCDC171-208ENST00000486641 PANK3Q9H999 370 aa13.72□□□□□ -0.21
CCDC171-208ENST00000486641 ADGBQ8N7X0 1667 aa13.71□□□□□ -0.21
CCDC171-208ENST00000486641 GOLGA2Q08379 1002 aa13.7□□□□□ -0.22
CCDC171-208ENST00000486641 ZNF521Q96K83 1311 aa13.7□□□□□ -0.22
CCDC171-208ENST00000486641 CAMSAP2Q08AD1 1489 aa13.69□□□□□ -0.22
CCDC171-208ENST00000486641 NUP155O75694 1391 aa13.69□□□□□ -0.22
CCDC171-208ENST00000486641 GZF1Q9H116 711 aaPredicted RBP13.68□□□□□ -0.22
CCDC171-208ENST00000486641 EIF3AQ14152 1382 aaKnown RBP13.68□□□□□ -0.22
CCDC171-208ENST00000486641 SLFN5Q08AF3 891 aa13.68□□□□□ -0.22
CCDC171-208ENST00000486641 NBPF1Q3BBV0 1214 aa13.68□□□□□ -0.22
CCDC171-208ENST00000486641 CFDP1Q9UEE9 299 aaPredicted RBP13.68□□□□□ -0.22
CCDC171-208ENST00000486641 ADGRL2O95490 1459 aa13.68□□□□□ -0.22
CCDC171-208ENST00000486641 NLRP1Q9C000 1473 aa13.68□□□□□ -0.22
CCDC171-208ENST00000486641 BCAR3O75815 825 aa13.67□□□□□ -0.22
CCDC171-208ENST00000486641 ZNF777Q9ULD5 760 aaPredicted RBP13.67□□□□□ -0.22
CCDC171-208ENST00000486641 ANKRD50Q9ULJ7 1429 aa13.67□□□□□ -0.22
CCDC171-208ENST00000486641 DISP3Q9P2K9 1392 aa13.67□□□□□ -0.22
CCDC171-208ENST00000486641 URB2Q14146 1524 aaKnown RBP13.67□□□□□ -0.22
CCDC171-208ENST00000486641 ANKRD30AQ9BXX3 1397 aa13.66□□□□□ -0.22
CCDC171-208ENST00000486641 TBC1D2Q9BYX2 928 aa13.66□□□□□ -0.22
CCDC171-208ENST00000486641 IQGAP2Q13576 1575 aa13.66□□□□□ -0.22
CCDC171-208ENST00000486641 MCM4P33991 863 aa13.65□□□□□ -0.22
CCDC171-208ENST00000486641 WDR43Q15061 677 aaKnown RBP eCLIP13.65□□□□□ -0.22
CCDC171-208ENST00000486641 TRMT2AQ8IZ69 625 aaKnown RBP13.65□□□□□ -0.22
CCDC171-208ENST00000486641 TESK2Q96S53 571 aa13.65□□□□□ -0.22
CCDC171-208ENST00000486641 CEP170Q5SW79 1584 aa13.65□□□□□ -0.22
CCDC171-208ENST00000486641 TRPM1Q7Z4N2 1603 aa13.64□□□□□ -0.23
CCDC171-208ENST00000486641 SPINK5Q9NQ38 1064 aaPredicted RBP13.64□□□□□ -0.23
CCDC171-208ENST00000486641 COL17A1Q9UMD9 1497 aaPredicted RBP13.64□□□□□ -0.23
CCDC171-208ENST00000486641 SPRYD3Q8NCJ5 442 aa13.64□□□□□ -0.23
CCDC171-208ENST00000486641 MAPK8IP3Q9UPT6 1336 aa13.64□□□□□ -0.23
CCDC171-208ENST00000486641 CROCC2H7BZ55 1655 aa13.63□□□□□ -0.23
CCDC171-208ENST00000486641 PPP2R1AP30153 589 aa13.63□□□□□ -0.23
CCDC171-208ENST00000486641 DNAJC5BQ9UF47 199 aa13.63□□□□□ -0.23
CCDC171-208ENST00000486641 PRAG1Q86YV5 1406 aa13.63□□□□□ -0.23
CCDC171-208ENST00000486641 TBC1D32Q96NH3 1257 aa13.62□□□□□ -0.23
CCDC171-208ENST00000486641 KDM5DQ9BY66 1539 aa13.62□□□□□ -0.23
CCDC171-208ENST00000486641 NUP153P49790 1475 aaKnown RBP13.62□□□□□ -0.23
CCDC171-208ENST00000486641 MRE11P49959 708 aa13.62□□□□□ -0.23
CCDC171-208ENST00000486641 TRAK2O60296 914 aa13.61□□□□□ -0.23
CCDC171-208ENST00000486641 PRG4Q92954 1404 aaPredicted RBP13.61□□□□□ -0.23
CCDC171-208ENST00000486641 ERBB4Q15303 1308 aa13.6□□□□□ -0.23
CCDC171-208ENST00000486641 GPATCH8Q9UKJ3 1502 aaKnown RBP13.6□□□□□ -0.23
CCDC171-208ENST00000486641 ESPNB1AK53 854 aa13.6□□□□□ -0.23
CCDC171-208ENST00000486641 CCDC146Q8IYE0 955 aa13.6□□□□□ -0.23
CCDC171-208ENST00000486641 CLUAP1Q96AJ1 413 aa13.6□□□□□ -0.23
CCDC171-208ENST00000486641 NKTRP30414 1462 aaKnown RBP13.6□□□□□ -0.23
CCDC171-208ENST00000486641 ERBINQ96RT1 1412 aa13.6□□□□□ -0.23
CCDC171-208ENST00000486641 RGL3Q3MIN7 710 aa13.59□□□□□ -0.23
CCDC171-208ENST00000486641 UPF2Q9HAU5 1272 aaKnown RBP13.59□□□□□ -0.23
CCDC171-208ENST00000486641 MYH16Q9H6N6 1097 aa13.59□□□□□ -0.23
CCDC171-208ENST00000486641 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
CCDC171-208ENST00000486641 TMF1P82094 1093 aa13.58□□□□□ -0.23
CCDC171-208ENST00000486641 GRPEL1Q9HAV7 217 aa13.58□□□□□ -0.23
CCDC171-208ENST00000486641 COG6Q9Y2V7 657 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms