RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 NOL10Q9BSC4 688 aaKnown RBP13.18□□□□□ -0.3
SRGAP3-207ENST00000485983 A0A0U1RQG5 324 aaPredicted RBP13.18□□□□□ -0.3
SRGAP3-207ENST00000485983 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.18□□□□□ -0.3
SRGAP3-207ENST00000485983 FOXD1Q16676 465 aa13.17□□□□□ -0.3
SRGAP3-207ENST00000485983 CREBRFQ8IUR6 639 aa13.17□□□□□ -0.3
SRGAP3-207ENST00000485983 AMOTL1Q8IY63 956 aa13.17□□□□□ -0.3
SRGAP3-207ENST00000485983 TCEAL9Q9UHQ7 104 aa13.16□□□□□ -0.3
SRGAP3-207ENST00000485983 SETD5Q9C0A6 1442 aa13.16□□□□□ -0.3
SRGAP3-207ENST00000485983 CCER2I3L3R5 266 aa13.16□□□□□ -0.3
SRGAP3-207ENST00000485983 MPHOSPH9Q99550 1183 aa13.15□□□□□ -0.3
SRGAP3-207ENST00000485983 RCAN3Q9UKA8 241 aa13.15□□□□□ -0.3
SRGAP3-207ENST00000485983 CHMP4CQ96CF2 233 aa13.15□□□□□ -0.3
SRGAP3-207ENST00000485983 AKAP17AQ02040 695 aaKnown RBP13.15□□□□□ -0.3
SRGAP3-207ENST00000485983 HNRNPMP52272 730 aaKnown RBP eCLIP13.15□□□□□ -0.31
SRGAP3-207ENST00000485983 SF3A1Q15459 793 aaKnown RBP13.15□□□□□ -0.31
SRGAP3-207ENST00000485983 AMER1Q5JTC6 1135 aaPredicted RBP13.15□□□□□ -0.31
SRGAP3-207ENST00000485983 TTC5Q8N0Z6 440 aa13.14□□□□□ -0.31
SRGAP3-207ENST00000485983 TEFQ10587 303 aa13.14□□□□□ -0.31
SRGAP3-207ENST00000485983 SOGA1O94964 1423 aa13.13□□□□□ -0.31
SRGAP3-207ENST00000485983 LRRFIP1Q32MZ4 808 aaKnown RBP13.13□□□□□ -0.31
SRGAP3-207ENST00000485983 TPM3P06753 285 aa13.13□□□□□ -0.31
SRGAP3-207ENST00000485983 CWC22Q9HCG8 908 aaKnown RBP13.13□□□□□ -0.31
SRGAP3-207ENST00000485983 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
SRGAP3-207ENST00000485983 TCERG1O14776 1098 aaKnown RBP13.12□□□□□ -0.31
SRGAP3-207ENST00000485983 COG3Q96JB2 828 aa13.12□□□□□ -0.31
SRGAP3-207ENST00000485983 TDRD9Q8NDG6 1382 aaKnown RBP13.12□□□□□ -0.31
SRGAP3-207ENST00000485983 TRAK1Q9UPV9 953 aa13.12□□□□□ -0.31
SRGAP3-207ENST00000485983 NEXNQ0ZGT2 675 aa13.12□□□□□ -0.31
SRGAP3-207ENST00000485983 SYNE3Q6ZMZ3 975 aa13.12□□□□□ -0.31
SRGAP3-207ENST00000485983 FMN1Q68DA7 1419 aa13.11□□□□□ -0.31
SRGAP3-207ENST00000485983 RAD21O60216 631 aa13.11□□□□□ -0.31
SRGAP3-207ENST00000485983 ABCC8Q09428 1581 aa13.11□□□□□ -0.31
SRGAP3-207ENST00000485983 CCDC88BA6NC98 1476 aa13.11□□□□□ -0.31
SRGAP3-207ENST00000485983 CNKSR2Q8WXI2 1034 aa13.11□□□□□ -0.31
SRGAP3-207ENST00000485983 USP35Q9P2H5 1018 aa13.11□□□□□ -0.31
SRGAP3-207ENST00000485983 MFAP1P55081 439 aaKnown RBP13.1□□□□□ -0.31
SRGAP3-207ENST00000485983 SYTL4Q96C24 671 aaPredicted RBP13.1□□□□□ -0.31
SRGAP3-207ENST00000485983 VGFO15240 615 aaPredicted RBP13.1□□□□□ -0.31
SRGAP3-207ENST00000485983 CLUAP1Q96AJ1 413 aa13.09□□□□□ -0.31
SRGAP3-207ENST00000485983 TPD52L1Q16890 204 aaPredicted RBP13.09□□□□□ -0.31
SRGAP3-207ENST00000485983 GOLGA6L1Q8N7Z2 621 aa13.09□□□□□ -0.31
SRGAP3-207ENST00000485983 PES1O00541 588 aaKnown RBP13.09□□□□□ -0.31
SRGAP3-207ENST00000485983 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
SRGAP3-207ENST00000485983 CENPJQ9HC77 1338 aaPredicted RBP13.08□□□□□ -0.31
SRGAP3-207ENST00000485983 VPS37DQ86XT2 251 aa13.08□□□□□ -0.32
SRGAP3-207ENST00000485983 TSR1Q2NL82 804 aaKnown RBP13.08□□□□□ -0.32
SRGAP3-207ENST00000485983 CPLX2Q6PUV4 134 aaKnown RBP13.08□□□□□ -0.32
SRGAP3-207ENST00000485983 NOL8Q76FK4 1167 aaKnown RBP13.08□□□□□ -0.32
SRGAP3-207ENST00000485983 ST18O60284 1047 aa13.08□□□□□ -0.32
SRGAP3-207ENST00000485983 WIZO95785 1651 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 WWC1Q8IX03 1113 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 H3BQV1 296 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 IFFO2Q5TF58 517 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 TPM2P07951 284 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 PSME1Q06323 249 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 CCDC146Q8IYE0 955 aa13.07□□□□□ -0.32
SRGAP3-207ENST00000485983 NGEFQ8N5V2 710 aa13.06□□□□□ -0.32
SRGAP3-207ENST00000485983 FAM184AQ8NB25 1140 aa13.06□□□□□ -0.32
SRGAP3-207ENST00000485983 FBXW7Q969H0 707 aa13.06□□□□□ -0.32
SRGAP3-207ENST00000485983 SLKQ9H2G2 1235 aaPredicted RBP13.06□□□□□ -0.32
SRGAP3-207ENST00000485983 JPH4Q96JJ6 628 aa13.06□□□□□ -0.32
SRGAP3-207ENST00000485983 NLRP13Q86W25 1043 aa13.05□□□□□ -0.32
SRGAP3-207ENST00000485983 DHX16O60231 1041 aaKnown RBP13.05□□□□□ -0.32
SRGAP3-207ENST00000485983 GZF1Q9H116 711 aaPredicted RBP13.04□□□□□ -0.32
SRGAP3-207ENST00000485983 C9orf78Q9NZ63 289 aaPredicted RBP13.04□□□□□ -0.32
SRGAP3-207ENST00000485983 EVC2Q86UK5 1308 aa13.04□□□□□ -0.32
SRGAP3-207ENST00000485983 UACAQ9BZF9 1416 aa13.04□□□□□ -0.32
SRGAP3-207ENST00000485983 PHF14O94880 888 aa13.04□□□□□ -0.32
SRGAP3-207ENST00000485983 RILPL2Q969X0 211 aa13.04□□□□□ -0.32
SRGAP3-207ENST00000485983 DDX58O95786 925 aaKnown RBP13.03□□□□□ -0.32
SRGAP3-207ENST00000485983 ATF3P18847 181 aa13.03□□□□□ -0.32
SRGAP3-207ENST00000485983 OSCARQ8IYS5 282 aa13.03□□□□□ -0.32
SRGAP3-207ENST00000485983 CCDC47Q96A33 483 aaKnown RBP13.03□□□□□ -0.32
SRGAP3-207ENST00000485983 RBM33Q96EV2 1170 aaKnown RBP13.02□□□□□ -0.32
SRGAP3-207ENST00000485983 ANO8Q9HCE9 1232 aaPredicted RBP13.02□□□□□ -0.32
SRGAP3-207ENST00000485983 EIF2S2P20042 333 aaKnown RBP13.02□□□□□ -0.32
SRGAP3-207ENST00000485983 TRIM29Q14134 588 aa13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 ELL2O00472 640 aaPredicted RBP13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 TPM1P09493 284 aa13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 PDE3BQ13370 1112 aa13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 CCDC43Q96MW1 224 aaKnown RBP13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 CGNL1Q0VF96 1302 aa13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 APPP05067 770 aa13.02□□□□□ -0.33
SRGAP3-207ENST00000485983 WASHC2AQ641Q2 1341 aa13.01□□□□□ -0.33
SRGAP3-207ENST00000485983 DIAPH3Q9NSV4 1193 aa13.01□□□□□ -0.33
SRGAP3-207ENST00000485983 KANK4Q5T7N3 995 aaPredicted RBP13.01□□□□□ -0.33
SRGAP3-207ENST00000485983 RUFY2Q8WXA3 655 aa13.01□□□□□ -0.33
SRGAP3-207ENST00000485983 PHLDB1Q86UU1 1377 aa13.01□□□□□ -0.33
SRGAP3-207ENST00000485983 CCDC18Q5T9S5 1454 aa13□□□□□ -0.33
SRGAP3-207ENST00000485983 ATP6V1DQ9Y5K8 247 aa13□□□□□ -0.33
SRGAP3-207ENST00000485983 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.99□□□□□ -0.33
SRGAP3-207ENST00000485983 TRDNQ13061 729 aa12.99□□□□□ -0.33
SRGAP3-207ENST00000485983 RAPGEF4Q8WZA2 1011 aa12.99□□□□□ -0.33
SRGAP3-207ENST00000485983 MINK1Q8N4C8 1332 aaPredicted RBP12.99□□□□□ -0.33
SRGAP3-207ENST00000485983 VPS8Q8N3P4 1428 aa12.98□□□□□ -0.33
SRGAP3-207ENST00000485983 L3MBTL2Q969R5 705 aa12.98□□□□□ -0.33
SRGAP3-207ENST00000485983 RRP7AQ9Y3A4 280 aaKnown RBP12.98□□□□□ -0.33
SRGAP3-207ENST00000485983 FOXD4L1Q9NU39 408 aa12.98□□□□□ -0.33
SRGAP3-207ENST00000485983 CPLX1O14810 134 aa12.97□□□□□ -0.33
SRGAP3-207ENST00000485983 IFIT2P09913 472 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms