RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 THSD4Q6ZMP0 1018 aa9.29□□□□□ -0.92
PTCD3-214ENST00000483925 WNT2BQ93097 391 aa9.29□□□□□ -0.92
PTCD3-214ENST00000483925 SPRYD3Q8NCJ5 442 aa9.28□□□□□ -0.92
PTCD3-214ENST00000483925 EPAS1Q99814 870 aa9.27□□□□□ -0.93
PTCD3-214ENST00000483925 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.27□□□□□ -0.93
PTCD3-214ENST00000483925 RABGEF1Q9UJ41 708 aa9.27□□□□□ -0.93
PTCD3-214ENST00000483925 COL9A1P20849 921 aa9.26□□□□□ -0.93
PTCD3-214ENST00000483925 PROX2Q3B8N5 592 aa9.25□□□□□ -0.93
PTCD3-214ENST00000483925 C6orf132Q5T0Z8 1188 aa9.24□□□□□ -0.93
PTCD3-214ENST00000483925 ONECUT3O60422 494 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-214ENST00000483925 LAPTM4BQ86VI4 370 aa9.21□□□□□ -0.94
PTCD3-214ENST00000483925 DDX12PQ92771 950 aa9.21□□□□□ -0.94
PTCD3-214ENST00000483925 ANKK1Q8NFD2 765 aa9.2□□□□□ -0.94
PTCD3-214ENST00000483925 RBM33Q96EV2 1170 aaKnown RBP9.2□□□□□ -0.94
PTCD3-214ENST00000483925 KIAA1468Q9P260 1216 aa9.2□□□□□ -0.94
PTCD3-214ENST00000483925 IFFO2Q5TF58 517 aa9.19□□□□□ -0.94
PTCD3-214ENST00000483925 SPDYE16A6NNV3 312 aaPredicted RBP9.18□□□□□ -0.94
PTCD3-214ENST00000483925 PDIA6Q15084 440 aa9.18□□□□□ -0.94
PTCD3-214ENST00000483925 PAXIP1Q6ZW49 1069 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-214ENST00000483925 CFAP44Q96MT7 982 aa9.17□□□□□ -0.94
PTCD3-214ENST00000483925 TRIM6-TRIM34B2RNG4 842 aa9.16□□□□□ -0.94
PTCD3-214ENST00000483925 NBR1Q14596 966 aa9.16□□□□□ -0.94
PTCD3-214ENST00000483925 E2F4Q16254 413 aa9.16□□□□□ -0.94
PTCD3-214ENST00000483925 ZFRQ96KR1 1074 aaKnown RBP9.16□□□□□ -0.94
PTCD3-214ENST00000483925 WDR70Q9NW82 654 aa9.16□□□□□ -0.94
PTCD3-214ENST00000483925 EN1Q05925 392 aaPredicted RBP9.15□□□□□ -0.94
PTCD3-214ENST00000483925 SOWAHBA6NEL2 793 aa9.14□□□□□ -0.95
PTCD3-214ENST00000483925 MAP3K7O43318 606 aa9.14□□□□□ -0.95
PTCD3-214ENST00000483925 BCAMP50895 628 aa9.14□□□□□ -0.95
PTCD3-214ENST00000483925 SEPT9Q9UHD8 586 aaPredicted RBP9.14□□□□□ -0.95
PTCD3-214ENST00000483925 PLCB2Q00722 1185 aa9.13□□□□□ -0.95
PTCD3-214ENST00000483925 RGS20O76081 388 aa9.12□□□□□ -0.95
PTCD3-214ENST00000483925 FAM98CQ17RN3 349 aaKnown RBP9.12□□□□□ -0.95
PTCD3-214ENST00000483925 NYAP1Q6ZVC0 841 aa9.12□□□□□ -0.95
PTCD3-214ENST00000483925 ARIH1Q9Y4X5 557 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-214ENST00000483925 TSR1Q2NL82 804 aaKnown RBP9.11□□□□□ -0.95
PTCD3-214ENST00000483925 PACS2Q86VP3 889 aa9.11□□□□□ -0.95
PTCD3-214ENST00000483925 A0A0G2JS52 829 aa9.1□□□□□ -0.95
PTCD3-214ENST00000483925 BCANQ96GW7 911 aa9.1□□□□□ -0.95
PTCD3-214ENST00000483925 WBP1LQ9NX94 342 aa9.09□□□□□ -0.95
PTCD3-214ENST00000483925 GRXCR2A6NFK2 248 aa9.08□□□□□ -0.96
PTCD3-214ENST00000483925 ITGBL1O95965 494 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-214ENST00000483925 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-214ENST00000483925 TSKSQ9UJT2 592 aa9.08□□□□□ -0.96
PTCD3-214ENST00000483925 CERKQ8TCT0 537 aa9.07□□□□□ -0.96
PTCD3-214ENST00000483925 LRCH3Q96II8 777 aa9.07□□□□□ -0.96
PTCD3-214ENST00000483925 PRSS12P56730 875 aa9.06□□□□□ -0.96
PTCD3-214ENST00000483925 CDCA7LQ96GN5 454 aa9.06□□□□□ -0.96
PTCD3-214ENST00000483925 TSR3Q9UJK0 312 aaKnown RBP9.06□□□□□ -0.96
PTCD3-214ENST00000483925 HPS5Q9UPZ3 1129 aa9.05□□□□□ -0.96
PTCD3-214ENST00000483925 PRIM1P49642 420 aaKnown RBP9.03□□□□□ -0.96
PTCD3-214ENST00000483925 KCNC4Q03721 635 aa9.03□□□□□ -0.96
PTCD3-214ENST00000483925 OSBPP22059 807 aa9.02□□□□□ -0.97
PTCD3-214ENST00000483925 HAP1P54257 671 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-214ENST00000483925 FAM198AQ9UFP1 575 aa9.01□□□□□ -0.97
PTCD3-214ENST00000483925 SMAPO00193 183 aa9□□□□□ -0.97
PTCD3-214ENST00000483925 PPP4CP60510 307 aa9□□□□□ -0.97
PTCD3-214ENST00000483925 TATDN2Q93075 761 aa9□□□□□ -0.97
PTCD3-214ENST00000483925 NBPF26B4DH59 902 aa8.99□□□□□ -0.97
PTCD3-214ENST00000483925 SAMD7Q7Z3H4 446 aa8.99□□□□□ -0.97
PTCD3-214ENST00000483925 IRX2Q9BZI1 471 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-214ENST00000483925 PRKCSHP14314 528 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-214ENST00000483925 PNMA3Q9UL41 463 aa8.98□□□□□ -0.97
PTCD3-214ENST00000483925 CDHR5Q9HBB8 845 aa8.97□□□□□ -0.97
PTCD3-214ENST00000483925 RBM27Q9P2N5 1060 aaKnown RBP8.97□□□□□ -0.97
PTCD3-214ENST00000483925 C3orf80F5H4A9 247 aa8.96□□□□□ -0.98
PTCD3-214ENST00000483925 HDGFP51858 240 aaKnown RBP8.96□□□□□ -0.98
PTCD3-214ENST00000483925 NUDT18Q6ZVK8 323 aa8.95□□□□□ -0.98
PTCD3-214ENST00000483925 VSIG10Q8N0Z9 540 aa8.93□□□□□ -0.98
PTCD3-214ENST00000483925 ARHGEF1Q92888 912 aaKnown RBP8.93□□□□□ -0.98
PTCD3-214ENST00000483925 NPDC1Q9NQX5 325 aaPredicted RBP8.93□□□□□ -0.98
PTCD3-214ENST00000483925 TSHZ2Q9NRE2 1034 aa8.93□□□□□ -0.98
PTCD3-214ENST00000483925 TTC13Q8NBP0 860 aa8.92□□□□□ -0.98
PTCD3-214ENST00000483925 TJAP1Q5JTD0 557 aa8.91□□□□□ -0.98
PTCD3-214ENST00000483925 PADI6Q6TGC4 694 aa8.9□□□□□ -0.98
PTCD3-214ENST00000483925 RNF40O75150 1001 aa8.89□□□□□ -0.99
PTCD3-214ENST00000483925 KCNV2Q8TDN2 545 aa8.88□□□□□ -0.99
PTCD3-214ENST00000483925 NECTIN2Q92692 538 aa8.88□□□□□ -0.99
PTCD3-214ENST00000483925 MTRQ99707 1265 aa8.88□□□□□ -0.99
PTCD3-214ENST00000483925 IL21Q9HBE4 155 aa8.88□□□□□ -0.99
PTCD3-214ENST00000483925 MLLT3P42568 568 aaPredicted RBP8.87□□□□□ -0.99
PTCD3-214ENST00000483925 SWT1Q5T5J6 900 aaKnown RBP8.86□□□□□ -0.99
PTCD3-214ENST00000483925 SLC4A3P48751 1232 aa8.85□□□□□ -0.99
PTCD3-214ENST00000483925 APLP1P51693 650 aa8.85□□□□□ -0.99
PTCD3-214ENST00000483925 SLF2Q8IX21 1173 aa8.85□□□□□ -0.99
PTCD3-214ENST00000483925 EYA1Q99502 592 aa8.85□□□□□ -0.99
PTCD3-214ENST00000483925 ZNF516Q92618 1163 aa8.83□□□□□ -1
PTCD3-214ENST00000483925 PTGDRQ13258 359 aa8.82□□□□□ -1
PTCD3-214ENST00000483925 TPRNQ4KMQ1 711 aa8.82□□□□□ -1
PTCD3-214ENST00000483925 PPP1R18Q6NYC8 613 aa8.81□□□□□ -1
PTCD3-214ENST00000483925 P3H3Q8IVL6 736 aa8.81□□□□□ -1
PTCD3-214ENST00000483925 Q6ZNB5 142 aa8.8□□□□□ -1
PTCD3-214ENST00000483925 NUTM2FA1L443 756 aa8.79□□□□□ -1
PTCD3-214ENST00000483925 LAPTM4AQ15012 233 aa8.79□□□□□ -1
PTCD3-214ENST00000483925 PRR14Q9BWN1 585 aa8.79□□□□□ -1
PTCD3-214ENST00000483925 PRKD2Q9BZL6 878 aa8.79□□□□□ -1
PTCD3-214ENST00000483925 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.79□□□□□ -1
PTCD3-214ENST00000483925 COPS2P61201 443 aa8.78□□□□□ -1
PTCD3-214ENST00000483925 RBM46Q8TBY0 533 aaKnown RBP8.78□□□□□ -1
PTCD3-214ENST00000483925 DNAJB2P25686 324 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms