RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 RGL3Q3MIN7 710 aa20.32■□□□□ 0.84
CHD3-211ENST00000481999 UNC13BO14795 1591 aa20.31■□□□□ 0.84
CHD3-211ENST00000481999 KIF13AQ9H1H9 1805 aa20.31■□□□□ 0.84
CHD3-211ENST00000481999 PLA2R1Q13018 1463 aa20.3■□□□□ 0.84
CHD3-211ENST00000481999 DCAF11Q8TEB1 546 aa20.3■□□□□ 0.84
CHD3-211ENST00000481999 ARAP3Q8WWN8 1544 aa20.3■□□□□ 0.84
CHD3-211ENST00000481999 ERBINQ96RT1 1412 aa20.28■□□□□ 0.84
CHD3-211ENST00000481999 CD109Q6YHK3 1445 aa20.27■□□□□ 0.84
CHD3-211ENST00000481999 GLI2P10070 1586 aa20.26■□□□□ 0.83
CHD3-211ENST00000481999 ATP7AQ04656 1500 aa20.26■□□□□ 0.83
CHD3-211ENST00000481999 IQGAP3Q86VI3 1631 aa20.25■□□□□ 0.83
CHD3-211ENST00000481999 CCDC144AA2RUR9 1427 aa20.25■□□□□ 0.83
CHD3-211ENST00000481999 KIF3BO15066 747 aa20.24■□□□□ 0.83
CHD3-211ENST00000481999 MAGI2Q86UL8 1455 aa20.22■□□□□ 0.83
CHD3-211ENST00000481999 INO80Q9ULG1 1556 aaPredicted RBP20.22■□□□□ 0.83
CHD3-211ENST00000481999 SPATA31E1Q6ZUB1 1445 aa20.22■□□□□ 0.83
CHD3-211ENST00000481999 RTEL1-TNFRSF6BF6WH68 1400 aa20.21■□□□□ 0.83
CHD3-211ENST00000481999 RAPGEF3O95398 923 aa20.21■□□□□ 0.83
CHD3-211ENST00000481999 MAP3K4Q9Y6R4 1608 aa20.21■□□□□ 0.83
CHD3-211ENST00000481999 POLR3GLQ9BT43 218 aa20.19■□□□□ 0.82
CHD3-211ENST00000481999 USP47Q96K76 1375 aa20.19■□□□□ 0.82
CHD3-211ENST00000481999 TSPOAP1O95153 1857 aa20.18■□□□□ 0.82
CHD3-211ENST00000481999 ANP32CO43423 234 aa20.18■□□□□ 0.82
CHD3-211ENST00000481999 KIDINS220Q9ULH0 1771 aa20.17■□□□□ 0.82
CHD3-211ENST00000481999 KIF7Q2M1P5 1343 aa20.16■□□□□ 0.82
CHD3-211ENST00000481999 CARD11Q9BXL7 1154 aa20.16■□□□□ 0.82
CHD3-211ENST00000481999 CCDC7Q96M83 1385 aa20.16■□□□□ 0.82
CHD3-211ENST00000481999 CNGB1Q14028 1251 aaPredicted RBP20.15■□□□□ 0.82
CHD3-211ENST00000481999 E9PCH4 1651 aa20.15■□□□□ 0.82
CHD3-211ENST00000481999 NBPF1Q3BBV0 1214 aa20.14■□□□□ 0.82
CHD3-211ENST00000481999 PPRC1Q5VV67 1664 aaKnown RBP20.14■□□□□ 0.81
CHD3-211ENST00000481999 A2MP01023 1474 aa20.14■□□□□ 0.81
CHD3-211ENST00000481999 ZNF518AQ6AHZ1 1483 aa20.14■□□□□ 0.81
CHD3-211ENST00000481999 UHRF1BP1Q6BDS2 1440 aa20.13■□□□□ 0.81
CHD3-211ENST00000481999 BCORL1Q5H9F3 1711 aa20.13■□□□□ 0.81
CHD3-211ENST00000481999 DHX29Q7Z478 1369 aaKnown RBP20.13■□□□□ 0.81
CHD3-211ENST00000481999 POGZQ7Z3K3 1410 aa20.12■□□□□ 0.81
CHD3-211ENST00000481999 RALGAPBQ86X10 1494 aa20.11■□□□□ 0.81
CHD3-211ENST00000481999 KDM5CP41229 1560 aa20.11■□□□□ 0.81
CHD3-211ENST00000481999 ATP10AO60312 1499 aa20.1■□□□□ 0.81
CHD3-211ENST00000481999 ST20-MTHFSA0A0A6YYL1 179 aa20.1■□□□□ 0.81
CHD3-211ENST00000481999 DEPDC5O75140 1603 aa20.09■□□□□ 0.81
CHD3-211ENST00000481999 MROH1Q8NDA8 1641 aa20.09■□□□□ 0.81
CHD3-211ENST00000481999 SUPT16HQ9Y5B9 1047 aaKnown RBP20.09■□□□□ 0.81
CHD3-211ENST00000481999 ROCK2O75116 1388 aaKnown RBP20.09■□□□□ 0.81
CHD3-211ENST00000481999 GGT6Q6P531 493 aa20.09■□□□□ 0.81
CHD3-211ENST00000481999 PRAG1Q86YV5 1406 aa20.08■□□□□ 0.81
CHD3-211ENST00000481999 UGGT1Q9NYU2 1555 aa20.07■□□□□ 0.8
CHD3-211ENST00000481999 CNTLNQ9NXG0 1405 aa20.07■□□□□ 0.8
CHD3-211ENST00000481999 CCDC184Q52MB2 194 aa20.06■□□□□ 0.8
CHD3-211ENST00000481999 FRMPD1Q5SYB0 1578 aa20.05■□□□□ 0.8
CHD3-211ENST00000481999 CCER2I3L3R5 266 aa20.05■□□□□ 0.8
CHD3-211ENST00000481999 CFAP65Q6ZU64 1925 aaKnown RBP20.04■□□□□ 0.8
CHD3-211ENST00000481999 KANK1Q14678 1352 aa20.03■□□□□ 0.8
CHD3-211ENST00000481999 PRDM15P57071 1507 aaPredicted RBP20.03■□□□□ 0.8
CHD3-211ENST00000481999 ABCA6Q8N139 1617 aa20.03■□□□□ 0.8
CHD3-211ENST00000481999 VWDEQ8N2E2 1590 aa20.03■□□□□ 0.8
CHD3-211ENST00000481999 CLTCL1P53675 1640 aa20.02■□□□□ 0.8
CHD3-211ENST00000481999 TRPM1Q7Z4N2 1603 aa20.02■□□□□ 0.8
CHD3-211ENST00000481999 TET3O43151 1660 aa20.02■□□□□ 0.8
CHD3-211ENST00000481999 HECW2Q9P2P5 1572 aa20.02■□□□□ 0.8
CHD3-211ENST00000481999 SPHKAPQ2M3C7 1700 aa20.02■□□□□ 0.79
CHD3-211ENST00000481999 CFAP74Q9C0B2 1584 aa20.01■□□□□ 0.79
CHD3-211ENST00000481999 NEO1Q92859 1461 aa20■□□□□ 0.79
CHD3-211ENST00000481999 CEP152O94986 1710 aa20■□□□□ 0.79
CHD3-211ENST00000481999 TRPM2O94759 1503 aa20■□□□□ 0.79
CHD3-211ENST00000481999 YEATS2Q9ULM3 1422 aa20■□□□□ 0.79
CHD3-211ENST00000481999 MLH3Q9UHC1 1453 aa20■□□□□ 0.79
CHD3-211ENST00000481999 EIF2AK4Q9P2K8 1649 aaKnown RBP19.99■□□□□ 0.79
CHD3-211ENST00000481999 PTPRTO14522 1441 aa19.99■□□□□ 0.79
CHD3-211ENST00000481999 POLR1AO95602 1720 aaPredicted RBP19.98■□□□□ 0.79
CHD3-211ENST00000481999 COL17A1Q9UMD9 1497 aaPredicted RBP19.97■□□□□ 0.79
CHD3-211ENST00000481999 PRKRIP1Q9H875 184 aaPredicted RBP19.97■□□□□ 0.79
CHD3-211ENST00000481999 EFCAB6Q5THR3 1501 aa19.94■□□□□ 0.78
CHD3-211ENST00000481999 RICTORQ6R327 1708 aa19.94■□□□□ 0.78
CHD3-211ENST00000481999 WASHC2CQ9Y4E1 1318 aa19.93■□□□□ 0.78
CHD3-211ENST00000481999 CHGAP10645 457 aaKnown RBP19.93■□□□□ 0.78
CHD3-211ENST00000481999 NPATQ14207 1427 aa19.92■□□□□ 0.78
CHD3-211ENST00000481999 DIP2CQ9Y2E4 1556 aa19.92■□□□□ 0.78
CHD3-211ENST00000481999 SENP3Q9H4L4 574 aaPredicted RBP19.91■□□□□ 0.78
CHD3-211ENST00000481999 RNF17Q9BXT8 1623 aaKnown RBP19.9■□□□□ 0.78
CHD3-211ENST00000481999 GPRASP1Q5JY77 1395 aa19.89■□□□□ 0.77
CHD3-211ENST00000481999 MADDQ8WXG6 1647 aa19.88■□□□□ 0.77
CHD3-211ENST00000481999 DISP3Q9P2K9 1392 aa19.88■□□□□ 0.77
CHD3-211ENST00000481999 TESK2Q96S53 571 aa19.88■□□□□ 0.77
CHD3-211ENST00000481999 ADGRF5Q8IZF2 1346 aa19.88■□□□□ 0.77
CHD3-211ENST00000481999 MROH2AA6NES4 1674 aa19.87■□□□□ 0.77
CHD3-211ENST00000481999 NUTM2DQ5VT03 806 aaPredicted RBP19.86■□□□□ 0.77
CHD3-211ENST00000481999 FAM9BQ8IZU0 186 aa19.86■□□□□ 0.77
CHD3-211ENST00000481999 ABCC3O15438 1527 aa19.85■□□□□ 0.77
CHD3-211ENST00000481999 CFAP70Q5T0N1 1121 aa19.85■□□□□ 0.77
CHD3-211ENST00000481999 MRS2Q9HD23 443 aa19.85■□□□□ 0.77
CHD3-211ENST00000481999 SENP3-EIF4A1A0A087X0R7 540 aa19.84■□□□□ 0.77
CHD3-211ENST00000481999 LMTK2Q8IWU2 1503 aa19.84■□□□□ 0.77
CHD3-211ENST00000481999 HNRNPUQ00839 825 aaKnown RBP eCLIP19.83■□□□□ 0.77
CHD3-211ENST00000481999 SIGLEC1Q9BZZ2 1709 aa19.83■□□□□ 0.76
CHD3-211ENST00000481999 KIF1BO60333 1816 aa19.8■□□□□ 0.76
CHD3-211ENST00000481999 ARID4BQ4LE39 1312 aaPredicted RBP19.79■□□□□ 0.76
CHD3-211ENST00000481999 CAMSAP1Q5T5Y3 1602 aa19.79■□□□□ 0.76
CHD3-211ENST00000481999 NOS1P29475 1434 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms