RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 ITGBL1O95965 494 aaPredicted RBP9.11□□□□□ -0.95
PTCD3-212ENST00000477520 ANKK1Q8NFD2 765 aa9.1□□□□□ -0.95
PTCD3-212ENST00000477520 SOWAHBA6NEL2 793 aa9.07□□□□□ -0.96
PTCD3-212ENST00000477520 KIAA1468Q9P260 1216 aa9.07□□□□□ -0.96
PTCD3-212ENST00000477520 TYW1BQ6NUM6 668 aa9.06□□□□□ -0.96
PTCD3-212ENST00000477520 WBP1LQ9NX94 342 aa9.06□□□□□ -0.96
PTCD3-212ENST00000477520 CADPS2Q86UW7 1296 aa9.05□□□□□ -0.96
PTCD3-212ENST00000477520 LAPTM4BQ86VI4 370 aa9.05□□□□□ -0.96
PTCD3-212ENST00000477520 ZFRQ96KR1 1074 aaKnown RBP9.05□□□□□ -0.96
PTCD3-212ENST00000477520 PHF14O94880 888 aa9.04□□□□□ -0.96
PTCD3-212ENST00000477520 FBXW7Q969H0 707 aa9.04□□□□□ -0.96
PTCD3-212ENST00000477520 SEPT9Q9UHD8 586 aaPredicted RBP9.04□□□□□ -0.96
PTCD3-212ENST00000477520 C6orf132Q5T0Z8 1188 aa9.01□□□□□ -0.97
PTCD3-212ENST00000477520 Q6ZNB5 142 aa9.01□□□□□ -0.97
PTCD3-212ENST00000477520 KCNC4Q03721 635 aa9□□□□□ -0.97
PTCD3-212ENST00000477520 ONECUT3O60422 494 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-212ENST00000477520 NYAP1Q6ZVC0 841 aa8.99□□□□□ -0.97
PTCD3-212ENST00000477520 TRIM6-TRIM34B2RNG4 842 aa8.98□□□□□ -0.97
PTCD3-212ENST00000477520 LCE2BO14633 110 aa8.97□□□□□ -0.97
PTCD3-212ENST00000477520 DPYSL4O14531 572 aa8.96□□□□□ -0.98
PTCD3-212ENST00000477520 FAM98CQ17RN3 349 aaKnown RBP8.96□□□□□ -0.98
PTCD3-212ENST00000477520 RBM33Q96EV2 1170 aaKnown RBP8.96□□□□□ -0.98
PTCD3-212ENST00000477520 EPAS1Q99814 870 aa8.96□□□□□ -0.98
PTCD3-212ENST00000477520 CAMK2BQ13554 666 aa8.95□□□□□ -0.98
PTCD3-212ENST00000477520 TSR3Q9UJK0 312 aaKnown RBP8.95□□□□□ -0.98
PTCD3-212ENST00000477520 HPS5Q9UPZ3 1129 aa8.95□□□□□ -0.98
PTCD3-212ENST00000477520 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-212ENST00000477520 DDX12PQ92771 950 aa8.93□□□□□ -0.98
PTCD3-212ENST00000477520 LRCH3Q96II8 777 aa8.93□□□□□ -0.98
PTCD3-212ENST00000477520 TSKSQ9UJT2 592 aa8.92□□□□□ -0.98
PTCD3-212ENST00000477520 TSR1Q2NL82 804 aaKnown RBP8.9□□□□□ -0.98
PTCD3-212ENST00000477520 GFRA3O60609 400 aa8.88□□□□□ -0.99
PTCD3-212ENST00000477520 TJAP1Q5JTD0 557 aa8.87□□□□□ -0.99
PTCD3-212ENST00000477520 C3orf80F5H4A9 247 aa8.86□□□□□ -0.99
PTCD3-212ENST00000477520 EN1Q05925 392 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-212ENST00000477520 NBR1Q14596 966 aa8.86□□□□□ -0.99
PTCD3-212ENST00000477520 LAPTM4AQ15012 233 aa8.86□□□□□ -0.99
PTCD3-212ENST00000477520 PACS2Q86VP3 889 aa8.86□□□□□ -0.99
PTCD3-212ENST00000477520 FAM198AQ9UFP1 575 aa8.86□□□□□ -0.99
PTCD3-212ENST00000477520 SMAPO00193 183 aa8.85□□□□□ -0.99
PTCD3-212ENST00000477520 PPP4CP60510 307 aa8.85□□□□□ -0.99
PTCD3-212ENST00000477520 TRAF7Q6Q0C0 670 aa8.85□□□□□ -0.99
PTCD3-212ENST00000477520 MAP3K7O43318 606 aa8.84□□□□□ -0.99
PTCD3-212ENST00000477520 DCAF8L2P0C7V8 631 aa8.84□□□□□ -0.99
PTCD3-212ENST00000477520 SAMD7Q7Z3H4 446 aa8.84□□□□□ -0.99
PTCD3-212ENST00000477520 PRKD2Q9BZL6 878 aa8.84□□□□□ -0.99
PTCD3-212ENST00000477520 PRIM1P49642 420 aaKnown RBP8.83□□□□□ -1
PTCD3-212ENST00000477520 CDCA7LQ96GN5 454 aa8.81□□□□□ -1
PTCD3-212ENST00000477520 MTRQ99707 1265 aa8.81□□□□□ -1
PTCD3-212ENST00000477520 PRSS12P56730 875 aa8.8□□□□□ -1
PTCD3-212ENST00000477520 PDIA6Q15084 440 aa8.8□□□□□ -1
PTCD3-212ENST00000477520 PPP1R18Q6NYC8 613 aa8.8□□□□□ -1
PTCD3-212ENST00000477520 ZNF516Q92618 1163 aa8.8□□□□□ -1
PTCD3-212ENST00000477520 NRG2O14511 850 aaPredicted RBP8.79□□□□□ -1
PTCD3-212ENST00000477520 TATDN2Q93075 761 aa8.78□□□□□ -1
PTCD3-212ENST00000477520 IL21Q9HBE4 155 aa8.78□□□□□ -1
PTCD3-212ENST00000477520 NKX2-3Q8TAU0 364 aa8.76□□□□□ -1.01
PTCD3-212ENST00000477520 PNMA3Q9UL41 463 aa8.76□□□□□ -1.01
PTCD3-212ENST00000477520 V9GY48 417 aaPredicted RBP8.76□□□□□ -1.01
PTCD3-212ENST00000477520 APLP1P51693 650 aa8.75□□□□□ -1.01
PTCD3-212ENST00000477520 CDHR5Q9HBB8 845 aa8.74□□□□□ -1.01
PTCD3-212ENST00000477520 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.74□□□□□ -1.01
PTCD3-212ENST00000477520 SPDYE16A6NNV3 312 aaPredicted RBP8.73□□□□□ -1.01
PTCD3-212ENST00000477520 NBPF26B4DH59 902 aa8.73□□□□□ -1.01
PTCD3-212ENST00000477520 GRXCR2A6NFK2 248 aa8.72□□□□□ -1.01
PTCD3-212ENST00000477520 RNF40O75150 1001 aa8.72□□□□□ -1.01
PTCD3-212ENST00000477520 NUDT18Q6ZVK8 323 aa8.72□□□□□ -1.01
PTCD3-212ENST00000477520 CERKQ8TCT0 537 aa8.71□□□□□ -1.02
PTCD3-212ENST00000477520 PDZRN3Q9UPQ7 1066 aa8.7□□□□□ -1.02
PTCD3-212ENST00000477520 OSBPP22059 807 aa8.68□□□□□ -1.02
PTCD3-212ENST00000477520 COPS2P61201 443 aa8.68□□□□□ -1.02
PTCD3-212ENST00000477520 ZNF787Q6DD87 383 aa8.68□□□□□ -1.02
PTCD3-212ENST00000477520 SWT1Q5T5J6 900 aaKnown RBP8.66□□□□□ -1.02
PTCD3-212ENST00000477520 ARIH1Q9Y4X5 557 aaPredicted RBP8.66□□□□□ -1.02
PTCD3-212ENST00000477520 E2F4Q16254 413 aa8.65□□□□□ -1.02
PTCD3-212ENST00000477520 TTC13Q8NBP0 860 aa8.65□□□□□ -1.02
PTCD3-212ENST00000477520 RBM27Q9P2N5 1060 aaKnown RBP8.65□□□□□ -1.02
PTCD3-212ENST00000477520 HDGFP51858 240 aaKnown RBP8.64□□□□□ -1.03
PTCD3-212ENST00000477520 TRIM67Q6ZTA4 783 aa8.64□□□□□ -1.03
PTCD3-212ENST00000477520 EMID1Q96A84 441 aaPredicted RBP8.64□□□□□ -1.03
PTCD3-212ENST00000477520 ZNF775Q96BV0 537 aaPredicted RBP8.64□□□□□ -1.03
PTCD3-212ENST00000477520 NPDC1Q9NQX5 325 aaPredicted RBP8.64□□□□□ -1.03
PTCD3-212ENST00000477520 PADI6Q6TGC4 694 aa8.63□□□□□ -1.03
PTCD3-212ENST00000477520 BBXQ8WY36 941 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-212ENST00000477520 ZPR1O75312 459 aa8.61□□□□□ -1.03
PTCD3-212ENST00000477520 GGCXP38435 758 aa8.61□□□□□ -1.03
PTCD3-212ENST00000477520 TMUB1Q9BVT8 246 aa8.61□□□□□ -1.03
PTCD3-212ENST00000477520 SLF2Q8IX21 1173 aa8.6□□□□□ -1.03
PTCD3-212ENST00000477520 RNF223E7ERA6 249 aa8.59□□□□□ -1.03
PTCD3-212ENST00000477520 EYA1Q99502 592 aa8.59□□□□□ -1.03
PTCD3-212ENST00000477520 SLC19A1P41440 591 aa8.57□□□□□ -1.04
PTCD3-212ENST00000477520 BLOC1S3Q6QNY0 202 aa8.57□□□□□ -1.04
PTCD3-212ENST00000477520 NECTIN2Q92692 538 aa8.57□□□□□ -1.04
PTCD3-212ENST00000477520 POTECB2RU33 542 aa8.56□□□□□ -1.04
PTCD3-212ENST00000477520 TLL1O43897 1013 aa8.56□□□□□ -1.04
PTCD3-212ENST00000477520 PCDHB3Q9Y5E6 796 aa8.56□□□□□ -1.04
PTCD3-212ENST00000477520 MYT1Q01538 1121 aa8.55□□□□□ -1.04
PTCD3-212ENST00000477520 SPRYD3Q8NCJ5 442 aa8.55□□□□□ -1.04
PTCD3-212ENST00000477520 SPRYD7Q5W111 196 aa8.54□□□□□ -1.04
PTCD3-212ENST00000477520 PPEF1O14829 653 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms