RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 ADGRD1Q6QNK2 874 aa12.04□□□□□ -0.48
PTCD3-211ENST00000476215 ANKRD13DQ6ZTN6 518 aa12.04□□□□□ -0.48
PTCD3-211ENST00000476215 KCNH8Q96L42 1107 aa12.04□□□□□ -0.48
PTCD3-211ENST00000476215 HRO43593 1189 aa12.03□□□□□ -0.48
PTCD3-211ENST00000476215 DDX12PQ92771 950 aa12.02□□□□□ -0.49
PTCD3-211ENST00000476215 ZBED2Q9BTP6 218 aa12.01□□□□□ -0.49
PTCD3-211ENST00000476215 PPP1R3GB7ZBB8 358 aa12□□□□□ -0.49
PTCD3-211ENST00000476215 EN1Q05925 392 aaPredicted RBP12□□□□□ -0.49
PTCD3-211ENST00000476215 VPS9D1Q9Y2B5 631 aa11.99□□□□□ -0.49
PTCD3-211ENST00000476215 C6orf132Q5T0Z8 1188 aa11.98□□□□□ -0.49
PTCD3-211ENST00000476215 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
PTCD3-211ENST00000476215 NBR1Q14596 966 aa11.97□□□□□ -0.49
PTCD3-211ENST00000476215 COL9A1P20849 921 aa11.95□□□□□ -0.5
PTCD3-211ENST00000476215 OSBPP22059 807 aa11.95□□□□□ -0.5
PTCD3-211ENST00000476215 PRIM1P49642 420 aaKnown RBP11.95□□□□□ -0.5
PTCD3-211ENST00000476215 BHMG1C9JSJ3 638 aaPredicted RBP11.94□□□□□ -0.5
PTCD3-211ENST00000476215 RNF166Q96A37 237 aaPredicted RBP11.94□□□□□ -0.5
PTCD3-211ENST00000476215 ONECUT3O60422 494 aaPredicted RBP11.93□□□□□ -0.5
PTCD3-211ENST00000476215 GRXCR2A6NFK2 248 aa11.9□□□□□ -0.5
PTCD3-211ENST00000476215 MAP3K7O43318 606 aa11.89□□□□□ -0.51
PTCD3-211ENST00000476215 RBM33Q96EV2 1170 aaKnown RBP11.89□□□□□ -0.51
PTCD3-211ENST00000476215 TSR1Q2NL82 804 aaKnown RBP11.88□□□□□ -0.51
PTCD3-211ENST00000476215 RABGEF1Q9UJ41 708 aa11.88□□□□□ -0.51
PTCD3-211ENST00000476215 MLLT3P42568 568 aaPredicted RBP11.87□□□□□ -0.51
PTCD3-211ENST00000476215 CERKQ8TCT0 537 aa11.87□□□□□ -0.51
PTCD3-211ENST00000476215 PROX2Q3B8N5 592 aa11.85□□□□□ -0.51
PTCD3-211ENST00000476215 TRIM6-TRIM34B2RNG4 842 aa11.84□□□□□ -0.51
PTCD3-211ENST00000476215 TESPA1A2RU30 521 aaPredicted RBP11.83□□□□□ -0.52
PTCD3-211ENST00000476215 RBM27Q9P2N5 1060 aaKnown RBP11.83□□□□□ -0.52
PTCD3-211ENST00000476215 SEMA3EO15041 775 aa11.82□□□□□ -0.52
PTCD3-211ENST00000476215 BCANQ96GW7 911 aa11.82□□□□□ -0.52
PTCD3-211ENST00000476215 NBPF3Q9H094 633 aa11.82□□□□□ -0.52
PTCD3-211ENST00000476215 CDHR5Q9HBB8 845 aa11.81□□□□□ -0.52
PTCD3-211ENST00000476215 NPDC1Q9NQX5 325 aaPredicted RBP11.81□□□□□ -0.52
PTCD3-211ENST00000476215 LAPTM4BQ86VI4 370 aa11.8□□□□□ -0.52
PTCD3-211ENST00000476215 PRSS12P56730 875 aa11.79□□□□□ -0.52
PTCD3-211ENST00000476215 MRPL50Q8N5N7 158 aaKnown RBP11.78□□□□□ -0.52
PTCD3-211ENST00000476215 TTC13Q8NBP0 860 aa11.78□□□□□ -0.52
PTCD3-211ENST00000476215 KIAA1468Q9P260 1216 aa11.78□□□□□ -0.52
PTCD3-211ENST00000476215 TSKSQ9UJT2 592 aa11.78□□□□□ -0.52
PTCD3-211ENST00000476215 CDCA7LQ96GN5 454 aa11.77□□□□□ -0.53
PTCD3-211ENST00000476215 STAC3Q96MF2 364 aa11.77□□□□□ -0.53
PTCD3-211ENST00000476215 FAM198AQ9UFP1 575 aa11.76□□□□□ -0.53
PTCD3-211ENST00000476215 PTGDRQ13258 359 aa11.73□□□□□ -0.53
PTCD3-211ENST00000476215 HCSTQ9UBK5 93 aa11.73□□□□□ -0.53
PTCD3-211ENST00000476215 PACS2Q86VP3 889 aa11.72□□□□□ -0.53
PTCD3-211ENST00000476215 KCTD12Q96CX2 325 aaKnown RBP11.72□□□□□ -0.53
PTCD3-211ENST00000476215 FAM98CQ17RN3 349 aaKnown RBP11.71□□□□□ -0.53
PTCD3-211ENST00000476215 SMYD5Q6GMV2 418 aa11.71□□□□□ -0.53
PTCD3-211ENST00000476215 THSD4Q6ZMP0 1018 aa11.71□□□□□ -0.53
PTCD3-211ENST00000476215 C3orf80F5H4A9 247 aa11.68□□□□□ -0.54
PTCD3-211ENST00000476215 WNT2BQ93097 391 aa11.68□□□□□ -0.54
PTCD3-211ENST00000476215 ZFRQ96KR1 1074 aaKnown RBP11.68□□□□□ -0.54
PTCD3-211ENST00000476215 NBPF26B4DH59 902 aa11.67□□□□□ -0.54
PTCD3-211ENST00000476215 PADI6Q6TGC4 694 aa11.67□□□□□ -0.54
PTCD3-211ENST00000476215 SEPT9Q9UHD8 586 aaPredicted RBP11.67□□□□□ -0.54
PTCD3-211ENST00000476215 GOLGA8CPA6NN73 597 aa11.66□□□□□ -0.54
PTCD3-211ENST00000476215 ANKK1Q8NFD2 765 aa11.66□□□□□ -0.54
PTCD3-211ENST00000476215 TATDN2Q93075 761 aa11.66□□□□□ -0.54
PTCD3-211ENST00000476215 SOWAHBA6NEL2 793 aa11.65□□□□□ -0.54
PTCD3-211ENST00000476215 GPR37O15354 613 aa11.65□□□□□ -0.54
PTCD3-211ENST00000476215 FCHSD2O94868 740 aa11.64□□□□□ -0.55
PTCD3-211ENST00000476215 RBM26Q5T8P6 1007 aaKnown RBP11.63□□□□□ -0.55
PTCD3-211ENST00000476215 NUTM2FA1L443 756 aa11.62□□□□□ -0.55
PTCD3-211ENST00000476215 PNMA3Q9UL41 463 aa11.62□□□□□ -0.55
PTCD3-211ENST00000476215 EYA1Q99502 592 aa11.61□□□□□ -0.55
PTCD3-211ENST00000476215 NUDT18Q6ZVK8 323 aa11.6□□□□□ -0.55
PTCD3-211ENST00000476215 SMAPO00193 183 aa11.59□□□□□ -0.55
PTCD3-211ENST00000476215 HIC1Q14526 733 aa11.59□□□□□ -0.55
PTCD3-211ENST00000476215 BCAMP50895 628 aa11.57□□□□□ -0.56
PTCD3-211ENST00000476215 NYAP1Q6ZVC0 841 aa11.57□□□□□ -0.56
PTCD3-211ENST00000476215 ADGRG1Q9Y653 693 aa11.57□□□□□ -0.56
PTCD3-211ENST00000476215 PTPN5P54829 565 aa11.56□□□□□ -0.56
PTCD3-211ENST00000476215 LRCH3Q96II8 777 aa11.56□□□□□ -0.56
PTCD3-211ENST00000476215 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.56□□□□□ -0.56
PTCD3-211ENST00000476215 GNPATO15228 680 aa11.54□□□□□ -0.56
PTCD3-211ENST00000476215 SAMD7Q7Z3H4 446 aa11.53□□□□□ -0.56
PTCD3-211ENST00000476215 TSR3Q9UJK0 312 aaKnown RBP11.53□□□□□ -0.56
PTCD3-211ENST00000476215 IFFO2Q5TF58 517 aa11.52□□□□□ -0.57
PTCD3-211ENST00000476215 GPIHBP1Q8IV16 184 aa11.51□□□□□ -0.57
PTCD3-211ENST00000476215 RBM46Q8TBY0 533 aaKnown RBP11.51□□□□□ -0.57
PTCD3-211ENST00000476215 TULP1O00294 542 aaPredicted RBP11.5□□□□□ -0.57
PTCD3-211ENST00000476215 WBP1LQ9NX94 342 aa11.5□□□□□ -0.57
PTCD3-211ENST00000476215 HPS5Q9UPZ3 1129 aa11.5□□□□□ -0.57
PTCD3-211ENST00000476215 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.49□□□□□ -0.57
PTCD3-211ENST00000476215 PLA2G2EQ9NZK7 142 aa11.49□□□□□ -0.57
PTCD3-211ENST00000476215 FECHP22830 423 aa11.48□□□□□ -0.57
PTCD3-211ENST00000476215 DNAJB2P25686 324 aa11.48□□□□□ -0.57
PTCD3-211ENST00000476215 PXYLP1Q8TE99 480 aa11.48□□□□□ -0.57
PTCD3-211ENST00000476215 TMEM134Q9H6X4 195 aa11.48□□□□□ -0.57
PTCD3-211ENST00000476215 ITGBL1O95965 494 aaPredicted RBP11.47□□□□□ -0.57
PTCD3-211ENST00000476215 OATP04181 439 aa11.47□□□□□ -0.57
PTCD3-211ENST00000476215 SWT1Q5T5J6 900 aaKnown RBP11.46□□□□□ -0.57
PTCD3-211ENST00000476215 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.45□□□□□ -0.58
PTCD3-211ENST00000476215 METTL3Q86U44 580 aaKnown RBP11.45□□□□□ -0.58
PTCD3-211ENST00000476215 NECTIN2Q92692 538 aa11.45□□□□□ -0.58
PTCD3-211ENST00000476215 RCCD1A6NED2 376 aa11.44□□□□□ -0.58
PTCD3-211ENST00000476215 HDGFP51858 240 aaKnown RBP11.44□□□□□ -0.58
PTCD3-211ENST00000476215 FAM161AQ3B820 660 aa11.44□□□□□ -0.58
PTCD3-211ENST00000476215 SLF2Q8IX21 1173 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms