RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 FAM50AQ14320 339 aaKnown RBP17.29■□□□□ 0.36
CKS1B-206ENST00000474215 CHIC2Q9UKJ5 165 aa17.28■□□□□ 0.36
CKS1B-206ENST00000474215 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
CKS1B-206ENST00000474215 KIF15Q9NS87 1388 aa17.28■□□□□ 0.36
CKS1B-206ENST00000474215 DUOX2Q9NRD8 1548 aa17.27■□□□□ 0.36
CKS1B-206ENST00000474215 FAM135AQ9P2D6 1515 aa17.27■□□□□ 0.36
CKS1B-206ENST00000474215 DNMT1P26358 1616 aaKnown RBP17.27■□□□□ 0.36
CKS1B-206ENST00000474215 KDM5DQ9BY66 1539 aa17.26■□□□□ 0.35
CKS1B-206ENST00000474215 FBXO31Q5XUX0 539 aaPredicted RBP17.26■□□□□ 0.35
CKS1B-206ENST00000474215 ANKRD30AQ9BXX3 1397 aa17.25■□□□□ 0.35
CKS1B-206ENST00000474215 CROCC2H7BZ55 1655 aa17.24■□□□□ 0.35
CKS1B-206ENST00000474215 ILDR1Q86SU0 546 aaPredicted RBP17.24■□□□□ 0.35
CKS1B-206ENST00000474215 PPARGC1BQ86YN6 1023 aaKnown RBP17.24■□□□□ 0.35
CKS1B-206ENST00000474215 EIF2AK4Q9P2K8 1649 aaKnown RBP17.24■□□□□ 0.35
CKS1B-206ENST00000474215 PZPP20742 1482 aa17.23■□□□□ 0.35
CKS1B-206ENST00000474215 RNF17Q9BXT8 1623 aaKnown RBP17.22■□□□□ 0.35
CKS1B-206ENST00000474215 NCOA1Q15788 1441 aa17.21■□□□□ 0.35
CKS1B-206ENST00000474215 ERBINQ96RT1 1412 aa17.21■□□□□ 0.35
CKS1B-206ENST00000474215 TNRQ92752 1358 aa17.21■□□□□ 0.35
CKS1B-206ENST00000474215 STRCQ7RTU9 1775 aa17.2■□□□□ 0.34
CKS1B-206ENST00000474215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.19■□□□□ 0.34
CKS1B-206ENST00000474215 ABCC3O15438 1527 aa17.19■□□□□ 0.34
CKS1B-206ENST00000474215 MYO3AQ8NEV4 1616 aa17.18■□□□□ 0.34
CKS1B-206ENST00000474215 PTPRTO14522 1441 aa17.18■□□□□ 0.34
CKS1B-206ENST00000474215 CAMSAP1Q5T5Y3 1602 aa17.18■□□□□ 0.34
CKS1B-206ENST00000474215 MROH1Q8NDA8 1641 aa17.18■□□□□ 0.34
CKS1B-206ENST00000474215 CEP170BQ9Y4F5 1589 aaPredicted RBP17.17■□□□□ 0.34
CKS1B-206ENST00000474215 A2ML1A8K2U0 1454 aa17.17■□□□□ 0.34
CKS1B-206ENST00000474215 ADGRL2O95490 1459 aa17.17■□□□□ 0.34
CKS1B-206ENST00000474215 NCKAP5LQ9HCH0 1330 aa17.17■□□□□ 0.34
CKS1B-206ENST00000474215 PKD2Q13563 968 aa17.15■□□□□ 0.34
CKS1B-206ENST00000474215 ZNF142P52746 1687 aaPredicted RBP17.15■□□□□ 0.34
CKS1B-206ENST00000474215 ZC3H13Q5T200 1668 aaKnown RBP17.15■□□□□ 0.34
CKS1B-206ENST00000474215 KANK1Q14678 1352 aa17.15■□□□□ 0.34
CKS1B-206ENST00000474215 CERKQ8TCT0 537 aa17.14■□□□□ 0.33
CKS1B-206ENST00000474215 FBXO41Q8TF61 875 aa17.14■□□□□ 0.33
CKS1B-206ENST00000474215 PLA2R1Q13018 1463 aa17.13■□□□□ 0.33
CKS1B-206ENST00000474215 PRDM15P57071 1507 aaPredicted RBP17.13■□□□□ 0.33
CKS1B-206ENST00000474215 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.13■□□□□ 0.33
CKS1B-206ENST00000474215 NLRP1Q9C000 1473 aa17.12■□□□□ 0.33
CKS1B-206ENST00000474215 THEMISQ8N1K5 641 aaPredicted RBP17.12■□□□□ 0.33
CKS1B-206ENST00000474215 ARHGAP31Q2M1Z3 1444 aa17.12■□□□□ 0.33
CKS1B-206ENST00000474215 ANKRD50Q9ULJ7 1429 aa17.12■□□□□ 0.33
CKS1B-206ENST00000474215 ITGAEP38570 1179 aa17.11■□□□□ 0.33
CKS1B-206ENST00000474215 DEPDC5O75140 1603 aa17.1■□□□□ 0.33
CKS1B-206ENST00000474215 ROCK1Q13464 1354 aa17.1■□□□□ 0.33
CKS1B-206ENST00000474215 ERVK-7P63135 1459 aa17.1■□□□□ 0.33
CKS1B-206ENST00000474215 SPATA31D1Q6ZQQ2 1576 aa17.1■□□□□ 0.33
CKS1B-206ENST00000474215 CEP152O94986 1710 aa17.1■□□□□ 0.33
CKS1B-206ENST00000474215 ANKLE2Q86XL3 938 aa17.07■□□□□ 0.32
CKS1B-206ENST00000474215 UGGT1Q9NYU2 1555 aa17.06■□□□□ 0.32
CKS1B-206ENST00000474215 LMTK2Q8IWU2 1503 aa17.06■□□□□ 0.32
CKS1B-206ENST00000474215 VWDEQ8N2E2 1590 aa17.06■□□□□ 0.32
CKS1B-206ENST00000474215 RRBP1Q9P2E9 1410 aaKnown RBP17.03■□□□□ 0.32
CKS1B-206ENST00000474215 ZNF335Q9H4Z2 1342 aaPredicted RBP17.01■□□□□ 0.31
CKS1B-206ENST00000474215 CFAP65Q6ZU64 1925 aaKnown RBP17.01■□□□□ 0.31
CKS1B-206ENST00000474215 LTBP4Q8N2S1 1624 aa17■□□□□ 0.31
CKS1B-206ENST00000474215 IDI1Q13907 227 aa16.99■□□□□ 0.31
CKS1B-206ENST00000474215 EFCAB6Q5THR3 1501 aa16.99■□□□□ 0.31
CKS1B-206ENST00000474215 STAG3Q9UJ98 1225 aa16.98■□□□□ 0.31
CKS1B-206ENST00000474215 NEURL4Q96JN8 1562 aa16.98■□□□□ 0.31
CKS1B-206ENST00000474215 NOS1P29475 1434 aa16.97■□□□□ 0.31
CKS1B-206ENST00000474215 SLC52A1Q9NWF4 448 aa16.97■□□□□ 0.31
CKS1B-206ENST00000474215 MED14O60244 1454 aa16.97■□□□□ 0.31
CKS1B-206ENST00000474215 NPHP4O75161 1426 aaPredicted RBP16.96■□□□□ 0.31
CKS1B-206ENST00000474215 NUP155O75694 1391 aa16.96■□□□□ 0.31
CKS1B-206ENST00000474215 RPRD2Q5VT52 1461 aaKnown RBP16.96■□□□□ 0.31
CKS1B-206ENST00000474215 POLR1AO95602 1720 aaPredicted RBP16.96■□□□□ 0.3
CKS1B-206ENST00000474215 UNC13BO14795 1591 aa16.95■□□□□ 0.3
CKS1B-206ENST00000474215 TXNDC2Q86VQ3 553 aa16.95■□□□□ 0.3
CKS1B-206ENST00000474215 PHF23Q9BUL5 403 aaPredicted RBP16.95■□□□□ 0.3
CKS1B-206ENST00000474215 UBR1Q8IWV7 1749 aa16.95■□□□□ 0.3
CKS1B-206ENST00000474215 LTKP29376 864 aa16.94■□□□□ 0.3
CKS1B-206ENST00000474215 EID1Q9Y6B2 187 aa16.94■□□□□ 0.3
CKS1B-206ENST00000474215 TET3O43151 1660 aa16.93■□□□□ 0.3
CKS1B-206ENST00000474215 SYNMO15061 1565 aa16.93■□□□□ 0.3
CKS1B-206ENST00000474215 IQSEC2Q5JU85 1478 aa16.93■□□□□ 0.3
CKS1B-206ENST00000474215 ARHGAP23Q9P227 1491 aa16.93■□□□□ 0.3
CKS1B-206ENST00000474215 PIK3C2BO00750 1634 aa16.92■□□□□ 0.3
CKS1B-206ENST00000474215 TMEM2Q9UHN6 1383 aa16.92■□□□□ 0.3
CKS1B-206ENST00000474215 SLIT1O75093 1534 aa16.92■□□□□ 0.3
CKS1B-206ENST00000474215 SCAF11Q99590 1463 aaKnown RBP16.91■□□□□ 0.3
CKS1B-206ENST00000474215 IQGAP3Q86VI3 1631 aa16.89■□□□□ 0.29
CKS1B-206ENST00000474215 NAIPQ13075 1403 aa16.89■□□□□ 0.29
CKS1B-206ENST00000474215 KDM5AP29375 1690 aaKnown RBP16.88■□□□□ 0.29
CKS1B-206ENST00000474215 IQGAP1P46940 1657 aa16.88■□□□□ 0.29
CKS1B-206ENST00000474215 GCC2Q8IWJ2 1684 aa16.88■□□□□ 0.29
CKS1B-206ENST00000474215 CPS1P31327 1500 aa16.86■□□□□ 0.29
CKS1B-206ENST00000474215 E9PCH4 1651 aa16.85■□□□□ 0.29
CKS1B-206ENST00000474215 HFM1A2PYH4 1435 aa16.85■□□□□ 0.29
CKS1B-206ENST00000474215 ADGRB3O60242 1522 aa16.85■□□□□ 0.29
CKS1B-206ENST00000474215 UBAP1LF5GYI3 381 aa16.84■□□□□ 0.29
CKS1B-206ENST00000474215 CHGAP10645 457 aaKnown RBP16.84■□□□□ 0.29
CKS1B-206ENST00000474215 HDGFP51858 240 aaKnown RBP16.84■□□□□ 0.29
CKS1B-206ENST00000474215 TRIM52Q96A61 297 aa16.83■□□□□ 0.28
CKS1B-206ENST00000474215 BCANQ96GW7 911 aa16.8■□□□□ 0.28
CKS1B-206ENST00000474215 SLC26A8Q96RN1 970 aa16.8■□□□□ 0.28
CKS1B-206ENST00000474215 TMEM131LA2VDJ0 1609 aa16.8■□□□□ 0.28
CKS1B-206ENST00000474215 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.79■□□□□ 0.28
CKS1B-206ENST00000474215 ZFYVE9O95405 1425 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms