RNA–Protein interactions for RNA: ENST00000474193.1

CCDC171-206, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 363 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-206ENST00000474193 SHANK2Q9UPX8 1470 aa28.66■■■□□ 2.18
CCDC171-206ENST00000474193 DAPK1P53355 1430 aa28.66■■■□□ 2.18
CCDC171-206ENST00000474193 KDM5DQ9BY66 1539 aa28.65■■■□□ 2.18
CCDC171-206ENST00000474193 DUOX2Q9NRD8 1548 aa28.65■■■□□ 2.18
CCDC171-206ENST00000474193 ILDR1Q86SU0 546 aaPredicted RBP28.64■■■□□ 2.18
CCDC171-206ENST00000474193 KIF15Q9NS87 1388 aa28.63■■■□□ 2.17
CCDC171-206ENST00000474193 CHIC2Q9UKJ5 165 aa28.63■■■□□ 2.17
CCDC171-206ENST00000474193 ANKRD30AQ9BXX3 1397 aa28.62■■■□□ 2.17
CCDC171-206ENST00000474193 DNMT1P26358 1616 aaKnown RBP28.61■■■□□ 2.17
CCDC171-206ENST00000474193 EIF2AK4Q9P2K8 1649 aaKnown RBP28.61■■■□□ 2.17
CCDC171-206ENST00000474193 CROCC2H7BZ55 1655 aa28.59■■■□□ 2.17
CCDC171-206ENST00000474193 FBXO31Q5XUX0 539 aaPredicted RBP28.57■■■□□ 2.16
CCDC171-206ENST00000474193 PZPP20742 1482 aa28.56■■■□□ 2.16
CCDC171-206ENST00000474193 TNRQ92752 1358 aa28.56■■■□□ 2.16
CCDC171-206ENST00000474193 ERBINQ96RT1 1412 aa28.56■■■□□ 2.16
CCDC171-206ENST00000474193 RNF17Q9BXT8 1623 aaKnown RBP28.55■■■□□ 2.16
CCDC171-206ENST00000474193 STRCQ7RTU9 1775 aa28.54■■■□□ 2.16
CCDC171-206ENST00000474193 KANK1Q14678 1352 aa28.53■■■□□ 2.16
CCDC171-206ENST00000474193 FBXO41Q8TF61 875 aa28.53■■■□□ 2.16
CCDC171-206ENST00000474193 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.53■■■□□ 2.16
CCDC171-206ENST00000474193 PTPRTO14522 1441 aa28.52■■■□□ 2.16
CCDC171-206ENST00000474193 CAMSAP1Q5T5Y3 1602 aa28.52■■■□□ 2.16
CCDC171-206ENST00000474193 MYO3AQ8NEV4 1616 aa28.52■■■□□ 2.16
CCDC171-206ENST00000474193 NCOA1Q15788 1441 aa28.52■■■□□ 2.16
CCDC171-206ENST00000474193 CEP170BQ9Y4F5 1589 aaPredicted RBP28.51■■■□□ 2.15
CCDC171-206ENST00000474193 PKD2Q13563 968 aa28.51■■■□□ 2.15
CCDC171-206ENST00000474193 ZC3H13Q5T200 1668 aaKnown RBP28.51■■■□□ 2.15
CCDC171-206ENST00000474193 A2ML1A8K2U0 1454 aa28.49■■■□□ 2.15
CCDC171-206ENST00000474193 PPARGC1BQ86YN6 1023 aaKnown RBP28.49■■■□□ 2.15
CCDC171-206ENST00000474193 CERKQ8TCT0 537 aa28.48■■■□□ 2.15
CCDC171-206ENST00000474193 ABCC3O15438 1527 aa28.48■■■□□ 2.15
CCDC171-206ENST00000474193 ZNF142P52746 1687 aaPredicted RBP28.48■■■□□ 2.15
CCDC171-206ENST00000474193 THEMISQ8N1K5 641 aaPredicted RBP28.47■■■□□ 2.15
CCDC171-206ENST00000474193 NCKAP5LQ9HCH0 1330 aa28.46■■■□□ 2.15
CCDC171-206ENST00000474193 PLA2R1Q13018 1463 aa28.45■■■□□ 2.14
CCDC171-206ENST00000474193 NLRP1Q9C000 1473 aa28.43■■■□□ 2.14
CCDC171-206ENST00000474193 ADGRL2O95490 1459 aa28.42■■■□□ 2.14
CCDC171-206ENST00000474193 MROH1Q8NDA8 1641 aa28.4■■■□□ 2.14
CCDC171-206ENST00000474193 PRDM15P57071 1507 aaPredicted RBP28.38■■■□□ 2.13
CCDC171-206ENST00000474193 CEP152O94986 1710 aa28.38■■■□□ 2.13
CCDC171-206ENST00000474193 ANKLE2Q86XL3 938 aa28.38■■■□□ 2.13
CCDC171-206ENST00000474193 ITGAEP38570 1179 aa28.37■■■□□ 2.13
CCDC171-206ENST00000474193 ANKRD50Q9ULJ7 1429 aa28.36■■■□□ 2.13
CCDC171-206ENST00000474193 CFAP65Q6ZU64 1925 aaKnown RBP28.36■■■□□ 2.13
CCDC171-206ENST00000474193 ARHGAP31Q2M1Z3 1444 aa28.35■■■□□ 2.13
CCDC171-206ENST00000474193 UGGT1Q9NYU2 1555 aa28.35■■■□□ 2.13
CCDC171-206ENST00000474193 ERVK-7P63135 1459 aa28.34■■■□□ 2.13
CCDC171-206ENST00000474193 SPATA31D1Q6ZQQ2 1576 aa28.34■■■□□ 2.13
CCDC171-206ENST00000474193 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.34■■■□□ 2.13
CCDC171-206ENST00000474193 DEPDC5O75140 1603 aa28.33■■■□□ 2.13
CCDC171-206ENST00000474193 ROCK1Q13464 1354 aa28.31■■■□□ 2.12
CCDC171-206ENST00000474193 STAG3Q9UJ98 1225 aa28.29■■■□□ 2.12
CCDC171-206ENST00000474193 LMTK2Q8IWU2 1503 aa28.25■■■□□ 2.11
CCDC171-206ENST00000474193 ZNF335Q9H4Z2 1342 aaPredicted RBP28.21■■■□□ 2.11
CCDC171-206ENST00000474193 POLR1AO95602 1720 aaPredicted RBP28.21■■■□□ 2.11
CCDC171-206ENST00000474193 VWDEQ8N2E2 1590 aa28.21■■■□□ 2.11
CCDC171-206ENST00000474193 EID1Q9Y6B2 187 aa28.2■■■□□ 2.1
CCDC171-206ENST00000474193 LTBP4Q8N2S1 1624 aa28.18■■■□□ 2.1
CCDC171-206ENST00000474193 SLC52A1Q9NWF4 448 aa28.17■■■□□ 2.1
CCDC171-206ENST00000474193 NPHP4O75161 1426 aaPredicted RBP28.16■■■□□ 2.1
CCDC171-206ENST00000474193 RRBP1Q9P2E9 1410 aaKnown RBP28.16■■■□□ 2.1
CCDC171-206ENST00000474193 IDI1Q13907 227 aa28.15■■■□□ 2.1
CCDC171-206ENST00000474193 TXNDC2Q86VQ3 553 aa28.15■■■□□ 2.1
CCDC171-206ENST00000474193 IQSEC2Q5JU85 1478 aa28.15■■■□□ 2.1
CCDC171-206ENST00000474193 EFCAB6Q5THR3 1501 aa28.14■■■□□ 2.1
CCDC171-206ENST00000474193 RPRD2Q5VT52 1461 aaKnown RBP28.14■■■□□ 2.09
CCDC171-206ENST00000474193 MED14O60244 1454 aa28.13■■■□□ 2.09
CCDC171-206ENST00000474193 UBR1Q8IWV7 1749 aa28.12■■■□□ 2.09
CCDC171-206ENST00000474193 NUP155O75694 1391 aa28.11■■■□□ 2.09
CCDC171-206ENST00000474193 NEURL4Q96JN8 1562 aa28.11■■■□□ 2.09
CCDC171-206ENST00000474193 NOS1P29475 1434 aa28.09■■■□□ 2.09
CCDC171-206ENST00000474193 UNC13BO14795 1591 aa28.09■■■□□ 2.09
CCDC171-206ENST00000474193 TET3O43151 1660 aa28.09■■■□□ 2.09
CCDC171-206ENST00000474193 SCAF11Q99590 1463 aaKnown RBP28.08■■■□□ 2.09
CCDC171-206ENST00000474193 HDGFP51858 240 aaKnown RBP28.07■■■□□ 2.08
CCDC171-206ENST00000474193 PIK3C2BO00750 1634 aa28.07■■■□□ 2.08
CCDC171-206ENST00000474193 SLIT1O75093 1534 aa28.05■■■□□ 2.08
CCDC171-206ENST00000474193 IQGAP1P46940 1657 aa28.05■■■□□ 2.08
CCDC171-206ENST00000474193 TMEM2Q9UHN6 1383 aa28.05■■■□□ 2.08
CCDC171-206ENST00000474193 GCC2Q8IWJ2 1684 aa28.04■■■□□ 2.08
CCDC171-206ENST00000474193 LTKP29376 864 aa28.04■■■□□ 2.08
CCDC171-206ENST00000474193 ARHGAP23Q9P227 1491 aa28.03■■■□□ 2.08
CCDC171-206ENST00000474193 KDM5AP29375 1690 aaKnown RBP28.03■■■□□ 2.08
CCDC171-206ENST00000474193 CPS1P31327 1500 aa28.02■■■□□ 2.08
CCDC171-206ENST00000474193 UBAP1LF5GYI3 381 aa28.02■■■□□ 2.08
CCDC171-206ENST00000474193 SYNMO15061 1565 aa28.02■■■□□ 2.08
CCDC171-206ENST00000474193 CHGAP10645 457 aaKnown RBP28.01■■■□□ 2.07
CCDC171-206ENST00000474193 IQGAP3Q86VI3 1631 aa28■■■□□ 2.07
CCDC171-206ENST00000474193 BCANQ96GW7 911 aa28■■■□□ 2.07
CCDC171-206ENST00000474193 ADGRB3O60242 1522 aa27.96■■■□□ 2.07
CCDC171-206ENST00000474193 TOM1O60784 492 aa27.95■■■□□ 2.06
CCDC171-206ENST00000474193 TRIM52Q96A61 297 aa27.95■■■□□ 2.06
CCDC171-206ENST00000474193 PPP1R15AO75807 674 aaPredicted RBP27.94■■■□□ 2.06
CCDC171-206ENST00000474193 NAIPQ13075 1403 aa27.93■■■□□ 2.06
CCDC171-206ENST00000474193 E9PCH4 1651 aa27.93■■■□□ 2.06
CCDC171-206ENST00000474193 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.92■■■□□ 2.06
CCDC171-206ENST00000474193 HFM1A2PYH4 1435 aa27.88■■■□□ 2.05
CCDC171-206ENST00000474193 SCAF1Q9H7N4 1312 aaKnown RBP27.88■■■□□ 2.05
CCDC171-206ENST00000474193 SLC26A8Q96RN1 970 aa27.86■■■□□ 2.05
CCDC171-206ENST00000474193 RIMS2Q9UQ26 1411 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms