RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 LETM1O95202 739 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-210ENST00000473258 RBM28Q9NW13 759 aaKnown RBP11.06□□□□□ -0.64
COL6A3-210ENST00000473258 FAM161AQ3B820 660 aa11.06□□□□□ -0.64
COL6A3-210ENST00000473258 ISY1Q9ULR0 285 aaKnown RBP11.06□□□□□ -0.64
COL6A3-210ENST00000473258 BECN2A8MW95 431 aa11.05□□□□□ -0.64
COL6A3-210ENST00000473258 GOLGA6L7A0A1B0GV03 622 aa11.05□□□□□ -0.64
COL6A3-210ENST00000473258 NEXNQ0ZGT2 675 aa11.05□□□□□ -0.64
COL6A3-210ENST00000473258 TRERF1Q96PN7 1200 aa11.05□□□□□ -0.64
COL6A3-210ENST00000473258 CT47A1Q5JQC4 288 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-210ENST00000473258 PSMD1Q99460 953 aa11.04□□□□□ -0.64
COL6A3-210ENST00000473258 FOXD4L1Q9NU39 408 aa11.04□□□□□ -0.64
COL6A3-210ENST00000473258 GOLGA6L10A6NI86 522 aa11.04□□□□□ -0.64
COL6A3-210ENST00000473258 CCDC34Q96HJ3 373 aa11.04□□□□□ -0.64
COL6A3-210ENST00000473258 CTR9Q6PD62 1173 aa11.03□□□□□ -0.64
COL6A3-210ENST00000473258 TAOK2Q9UL54 1235 aa11.03□□□□□ -0.64
COL6A3-210ENST00000473258 ZRSR2Q15696 482 aaKnown RBP11.03□□□□□ -0.64
COL6A3-210ENST00000473258 RCAN3Q9UKA8 241 aa11.03□□□□□ -0.64
COL6A3-210ENST00000473258 SARNPP82979 210 aaKnown RBP11.02□□□□□ -0.64
COL6A3-210ENST00000473258 DHX37Q8IY37 1157 aaKnown RBP11.02□□□□□ -0.64
COL6A3-210ENST00000473258 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.02□□□□□ -0.65
COL6A3-210ENST00000473258 SETSIPP0DME0 302 aa11.01□□□□□ -0.65
COL6A3-210ENST00000473258 RWDD1Q9H446 243 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-210ENST00000473258 CENPHQ9H3R5 247 aa11.01□□□□□ -0.65
COL6A3-210ENST00000473258 TICAM2Q86XR7 235 aa11□□□□□ -0.65
COL6A3-210ENST00000473258 TRHP20396 242 aaPredicted RBP11□□□□□ -0.65
COL6A3-210ENST00000473258 TMX4Q9H1E5 349 aaPredicted RBP11□□□□□ -0.65
COL6A3-210ENST00000473258 SKIDA1Q1XH10 827 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 TSR1Q2NL82 804 aaKnown RBP10.99□□□□□ -0.65
COL6A3-210ENST00000473258 GTPBP4Q9BZE4 634 aaKnown RBP10.99□□□□□ -0.65
COL6A3-210ENST00000473258 ST18O60284 1047 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 TPM1P09493 284 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 TPD52L1Q16890 204 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-210ENST00000473258 DDX11Q96FC9 970 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 FAM107BQ9H098 131 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 TRAK2O60296 914 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 KLHL34Q8N239 644 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 CCDC112Q8NEF3 446 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 ATP6V1DQ9Y5K8 247 aa10.99□□□□□ -0.65
COL6A3-210ENST00000473258 CAVIN1Q6NZI2 390 aaKnown RBP10.98□□□□□ -0.65
COL6A3-210ENST00000473258 MPHOSPH10O00566 681 aaKnown RBP10.98□□□□□ -0.65
COL6A3-210ENST00000473258 ZSCAN30Q86W11 494 aa10.98□□□□□ -0.65
COL6A3-210ENST00000473258 EIF3JO75822 258 aaKnown RBP10.98□□□□□ -0.65
COL6A3-210ENST00000473258 MNAT1P51948 309 aa10.98□□□□□ -0.65
COL6A3-210ENST00000473258 CT47B1P0C2W7 299 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-210ENST00000473258 VGLL3A8MV65 326 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 FRAT2O75474 233 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-210ENST00000473258 PAK3O75914 559 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-210ENST00000473258 BANK1Q8NDB2 785 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 TTLL5Q6EMB2 1281 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 PMFBP1Q8TBY8 1022 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 DNAAF4Q8WXU2 420 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 HDAC5Q9UQL6 1122 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 NUDCQ9Y266 331 aa10.97□□□□□ -0.65
COL6A3-210ENST00000473258 CEP89Q96ST8 783 aa10.96□□□□□ -0.65
COL6A3-210ENST00000473258 CPSF2Q9P2I0 782 aaKnown RBP10.96□□□□□ -0.65
COL6A3-210ENST00000473258 MRVI1Q9Y6F6 885 aa10.96□□□□□ -0.65
COL6A3-210ENST00000473258 IPO7O95373 1038 aaKnown RBP10.96□□□□□ -0.66
COL6A3-210ENST00000473258 SASS6Q6UVJ0 657 aa10.96□□□□□ -0.66
COL6A3-210ENST00000473258 STK31Q9BXU1 1019 aa10.96□□□□□ -0.66
COL6A3-210ENST00000473258 NBPF1Q3BBV0 1214 aa10.95□□□□□ -0.66
COL6A3-210ENST00000473258 GRPEL1Q9HAV7 217 aa10.95□□□□□ -0.66
COL6A3-210ENST00000473258 GOLGA6L10A0A0M3HER8 536 aa10.95□□□□□ -0.66
COL6A3-210ENST00000473258 FOXD4L5Q5VV16 416 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-210ENST00000473258 FOXD4L4Q8WXT5 416 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-210ENST00000473258 ZNF622Q969S3 477 aaKnown RBP eCLIP10.95□□□□□ -0.66
COL6A3-210ENST00000473258 NPHP1O15259 732 aa10.95□□□□□ -0.66
COL6A3-210ENST00000473258 SMAP1Q8IYB5 467 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-210ENST00000473258 EEA1Q15075 1411 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 ARID4AP29374 1257 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-210ENST00000473258 NF2P35240 595 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 RALBP1Q15311 655 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 CCDC91Q7Z6B0 441 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 BCCIPQ9P287 314 aaKnown RBP eCLIP10.94□□□□□ -0.66
COL6A3-210ENST00000473258 CCP110O43303 1012 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 FBLN2P98095 1184 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 CFAP53Q96M91 514 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 TRIM6-TRIM34B2RNG4 842 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 KIAA1328Q86T90 577 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 TRIM34Q9BYJ4 488 aa10.94□□□□□ -0.66
COL6A3-210ENST00000473258 IBSPP21815 317 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-210ENST00000473258 GTF2F1P35269 517 aaKnown RBP eCLIP10.93□□□□□ -0.66
COL6A3-210ENST00000473258 GOLIM4O00461 696 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 KIF20AO95235 890 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 MYO6Q9UM54 1294 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 DYNC1I1O14576 645 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 NEUROD2Q15784 382 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 RNF20Q5VTR2 975 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 CENPQQ7L2Z9 268 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-210ENST00000473258 MAPK8IP3Q9UPT6 1336 aa10.93□□□□□ -0.66
COL6A3-210ENST00000473258 ENOX2Q16206 610 aaKnown RBP10.92□□□□□ -0.66
COL6A3-210ENST00000473258 SUDS3Q9H7L9 328 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-210ENST00000473258 ERLIN1O75477 346 aa10.92□□□□□ -0.66
COL6A3-210ENST00000473258 CAGE1Q8TC20 777 aa10.92□□□□□ -0.66
COL6A3-210ENST00000473258 TOMM22Q9NS69 142 aa10.92□□□□□ -0.66
COL6A3-210ENST00000473258 AAMPQ13685 434 aa10.92□□□□□ -0.66
COL6A3-210ENST00000473258 NUCB2P80303 420 aa10.91□□□□□ -0.66
COL6A3-210ENST00000473258 PPP4R3BQ5MIZ7 849 aa10.91□□□□□ -0.66
COL6A3-210ENST00000473258 RNF214Q8ND24 703 aa10.91□□□□□ -0.66
COL6A3-210ENST00000473258 CREBRFQ8IUR6 639 aa10.91□□□□□ -0.66
COL6A3-210ENST00000473258 LIG1P18858 919 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms