RNA–Protein interactions for RNA: ENST00000472729.1

COMMD1-208, Transcript of copper metabolism domain containing 1, humanhuman

TSL 3

Gene COMMD1, Length 629 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD1-208ENST00000472729 TCOF1Q13428 1488 aaKnown RBP29.89■■■□□ 2.38
COMMD1-208ENST00000472729 SHANK2Q9UPX8 1470 aa29.89■■■□□ 2.38
COMMD1-208ENST00000472729 ANKRD30AQ9BXX3 1397 aa29.89■■■□□ 2.37
COMMD1-208ENST00000472729 PTPRKQ15262 1439 aa29.88■■■□□ 2.37
COMMD1-208ENST00000472729 KDM5DQ9BY66 1539 aa29.87■■■□□ 2.37
COMMD1-208ENST00000472729 DUOX2Q9NRD8 1548 aa29.86■■■□□ 2.37
COMMD1-208ENST00000472729 ILDR1Q86SU0 546 aaPredicted RBP29.85■■■□□ 2.37
COMMD1-208ENST00000472729 FAM135AQ9P2D6 1515 aa29.85■■■□□ 2.37
COMMD1-208ENST00000472729 FBXO31Q5XUX0 539 aaPredicted RBP29.84■■■□□ 2.37
COMMD1-208ENST00000472729 PPARGC1BQ86YN6 1023 aaKnown RBP29.84■■■□□ 2.37
COMMD1-208ENST00000472729 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.83■■■□□ 2.37
COMMD1-208ENST00000472729 TNRQ92752 1358 aa29.8■■■□□ 2.36
COMMD1-208ENST00000472729 ERBINQ96RT1 1412 aa29.79■■■□□ 2.36
COMMD1-208ENST00000472729 KANK1Q14678 1352 aa29.78■■■□□ 2.36
COMMD1-208ENST00000472729 DNMT1P26358 1616 aaKnown RBP29.78■■■□□ 2.36
COMMD1-208ENST00000472729 PZPP20742 1482 aa29.77■■■□□ 2.36
COMMD1-208ENST00000472729 EIF2AK4Q9P2K8 1649 aaKnown RBP29.74■■■□□ 2.35
COMMD1-208ENST00000472729 PKD2Q13563 968 aa29.73■■■□□ 2.35
COMMD1-208ENST00000472729 FBXO41Q8TF61 875 aa29.73■■■□□ 2.35
COMMD1-208ENST00000472729 NCOA1Q15788 1441 aa29.72■■■□□ 2.35
COMMD1-208ENST00000472729 NCKAP5LQ9HCH0 1330 aa29.71■■■□□ 2.35
COMMD1-208ENST00000472729 PTPRTO14522 1441 aa29.71■■■□□ 2.35
COMMD1-208ENST00000472729 ITGAEP38570 1179 aa29.7■■■□□ 2.35
COMMD1-208ENST00000472729 CAMSAP1Q5T5Y3 1602 aa29.7■■■□□ 2.34
COMMD1-208ENST00000472729 RNF17Q9BXT8 1623 aaKnown RBP29.7■■■□□ 2.34
COMMD1-208ENST00000472729 CROCC2H7BZ55 1655 aa29.69■■■□□ 2.34
COMMD1-208ENST00000472729 A2ML1A8K2U0 1454 aa29.69■■■□□ 2.34
COMMD1-208ENST00000472729 THEMISQ8N1K5 641 aaPredicted RBP29.69■■■□□ 2.34
COMMD1-208ENST00000472729 CERKQ8TCT0 537 aa29.69■■■□□ 2.34
COMMD1-208ENST00000472729 ABCC3O15438 1527 aa29.69■■■□□ 2.34
COMMD1-208ENST00000472729 CEP170BQ9Y4F5 1589 aaPredicted RBP29.68■■■□□ 2.34
COMMD1-208ENST00000472729 MYO3AQ8NEV4 1616 aa29.67■■■□□ 2.34
COMMD1-208ENST00000472729 PLA2R1Q13018 1463 aa29.63■■■□□ 2.33
COMMD1-208ENST00000472729 NLRP1Q9C000 1473 aa29.63■■■□□ 2.33
COMMD1-208ENST00000472729 ADGRL2O95490 1459 aa29.62■■■□□ 2.33
COMMD1-208ENST00000472729 ZC3H13Q5T200 1668 aaKnown RBP29.62■■■□□ 2.33
COMMD1-208ENST00000472729 ANKLE2Q86XL3 938 aa29.61■■■□□ 2.33
COMMD1-208ENST00000472729 ANKRD50Q9ULJ7 1429 aa29.61■■■□□ 2.33
COMMD1-208ENST00000472729 STRCQ7RTU9 1775 aa29.6■■■□□ 2.33
COMMD1-208ENST00000472729 ZNF142P52746 1687 aaPredicted RBP29.57■■■□□ 2.32
COMMD1-208ENST00000472729 PRDM15P57071 1507 aaPredicted RBP29.57■■■□□ 2.32
COMMD1-208ENST00000472729 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.56■■■□□ 2.32
COMMD1-208ENST00000472729 STAG3Q9UJ98 1225 aa29.56■■■□□ 2.32
COMMD1-208ENST00000472729 MROH1Q8NDA8 1641 aa29.56■■■□□ 2.32
COMMD1-208ENST00000472729 ERVK-7P63135 1459 aa29.55■■■□□ 2.32
COMMD1-208ENST00000472729 ARHGAP31Q2M1Z3 1444 aa29.55■■■□□ 2.32
COMMD1-208ENST00000472729 ROCK1Q13464 1354 aa29.54■■■□□ 2.32
COMMD1-208ENST00000472729 UGGT1Q9NYU2 1555 aa29.53■■■□□ 2.32
COMMD1-208ENST00000472729 SPATA31D1Q6ZQQ2 1576 aa29.51■■■□□ 2.31
COMMD1-208ENST00000472729 CEP152O94986 1710 aa29.46■■■□□ 2.31
COMMD1-208ENST00000472729 ZNF335Q9H4Z2 1342 aaPredicted RBP29.45■■■□□ 2.31
COMMD1-208ENST00000472729 DEPDC5O75140 1603 aa29.45■■■□□ 2.31
COMMD1-208ENST00000472729 EID1Q9Y6B2 187 aa29.44■■■□□ 2.3
COMMD1-208ENST00000472729 LMTK2Q8IWU2 1503 aa29.44■■■□□ 2.3
COMMD1-208ENST00000472729 SLC52A1Q9NWF4 448 aa29.4■■■□□ 2.3
COMMD1-208ENST00000472729 TXNDC2Q86VQ3 553 aa29.39■■■□□ 2.3
COMMD1-208ENST00000472729 RRBP1Q9P2E9 1410 aaKnown RBP29.38■■■□□ 2.29
COMMD1-208ENST00000472729 IDI1Q13907 227 aa29.38■■■□□ 2.29
COMMD1-208ENST00000472729 NUP155O75694 1391 aa29.38■■■□□ 2.29
COMMD1-208ENST00000472729 NPHP4O75161 1426 aaPredicted RBP29.37■■■□□ 2.29
COMMD1-208ENST00000472729 VWDEQ8N2E2 1590 aa29.37■■■□□ 2.29
COMMD1-208ENST00000472729 EFCAB6Q5THR3 1501 aa29.33■■■□□ 2.29
COMMD1-208ENST00000472729 RPRD2Q5VT52 1461 aaKnown RBP29.32■■■□□ 2.28
COMMD1-208ENST00000472729 LTBP4Q8N2S1 1624 aa29.31■■■□□ 2.28
COMMD1-208ENST00000472729 MED14O60244 1454 aa29.29■■■□□ 2.28
COMMD1-208ENST00000472729 NOS1P29475 1434 aa29.29■■■□□ 2.28
COMMD1-208ENST00000472729 CFAP65Q6ZU64 1925 aaKnown RBP29.28■■■□□ 2.28
COMMD1-208ENST00000472729 CHGAP10645 457 aaKnown RBP29.28■■■□□ 2.28
COMMD1-208ENST00000472729 HDGFP51858 240 aaKnown RBP29.28■■■□□ 2.28
COMMD1-208ENST00000472729 BCANQ96GW7 911 aa29.28■■■□□ 2.28
COMMD1-208ENST00000472729 TMEM2Q9UHN6 1383 aa29.27■■■□□ 2.28
COMMD1-208ENST00000472729 IQSEC2Q5JU85 1478 aa29.27■■■□□ 2.28
COMMD1-208ENST00000472729 SCAF11Q99590 1463 aaKnown RBP29.27■■■□□ 2.28
COMMD1-208ENST00000472729 LTKP29376 864 aa29.26■■■□□ 2.27
COMMD1-208ENST00000472729 UBAP1LF5GYI3 381 aa29.25■■■□□ 2.27
COMMD1-208ENST00000472729 NEURL4Q96JN8 1562 aa29.25■■■□□ 2.27
COMMD1-208ENST00000472729 POLR1AO95602 1720 aaPredicted RBP29.25■■■□□ 2.27
COMMD1-208ENST00000472729 UNC13BO14795 1591 aa29.22■■■□□ 2.27
COMMD1-208ENST00000472729 TRIM52Q96A61 297 aa29.22■■■□□ 2.27
COMMD1-208ENST00000472729 UBR1Q8IWV7 1749 aa29.21■■■□□ 2.27
COMMD1-208ENST00000472729 PPP1R15AO75807 674 aaPredicted RBP29.21■■■□□ 2.27
COMMD1-208ENST00000472729 SLIT1O75093 1534 aa29.2■■■□□ 2.27
COMMD1-208ENST00000472729 ARHGAP23Q9P227 1491 aa29.2■■■□□ 2.26
COMMD1-208ENST00000472729 TET3O43151 1660 aa29.2■■■□□ 2.26
COMMD1-208ENST00000472729 PIK3C2BO00750 1634 aa29.19■■■□□ 2.26
COMMD1-208ENST00000472729 CPS1P31327 1500 aa29.19■■■□□ 2.26
COMMD1-208ENST00000472729 SYNMO15061 1565 aa29.18■■■□□ 2.26
COMMD1-208ENST00000472729 IQGAP1P46940 1657 aa29.15■■■□□ 2.26
COMMD1-208ENST00000472729 NAIPQ13075 1403 aa29.15■■■□□ 2.26
COMMD1-208ENST00000472729 TOM1O60784 492 aa29.15■■■□□ 2.26
COMMD1-208ENST00000472729 SCAF1Q9H7N4 1312 aaKnown RBP29.14■■■□□ 2.25
COMMD1-208ENST00000472729 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.13■■■□□ 2.25
COMMD1-208ENST00000472729 ADGRB3O60242 1522 aa29.13■■■□□ 2.25
COMMD1-208ENST00000472729 IQGAP3Q86VI3 1631 aa29.12■■■□□ 2.25
COMMD1-208ENST00000472729 HFM1A2PYH4 1435 aa29.11■■■□□ 2.25
COMMD1-208ENST00000472729 SLC26A8Q96RN1 970 aa29.11■■■□□ 2.25
COMMD1-208ENST00000472729 GCC2Q8IWJ2 1684 aa29.1■■■□□ 2.25
COMMD1-208ENST00000472729 SENP3Q9H4L4 574 aaPredicted RBP29.08■■■□□ 2.25
COMMD1-208ENST00000472729 KDM5AP29375 1690 aaKnown RBP29.08■■■□□ 2.25
COMMD1-208ENST00000472729 PIP4K2BP78356 416 aa29.07■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms