RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 SOWAHBA6NEL2 793 aa15.05■□□□□ -0
SCN9A-206ENST00000472119 LAPTM4BQ86VI4 370 aa15.03■□□□□ -0
SCN9A-206ENST00000472119 EMILIN3Q9NT22 766 aa15.03■□□□□ -0
SCN9A-206ENST00000472119 TYW1BQ6NUM6 668 aa15.02■□□□□ -0
SCN9A-206ENST00000472119 ZFRQ96KR1 1074 aaKnown RBP15.02■□□□□ -0
SCN9A-206ENST00000472119 KIAA1468Q9P260 1216 aa15.02■□□□□ -0
SCN9A-206ENST00000472119 KCNC4Q03721 635 aa15.01□□□□□ -0.01
SCN9A-206ENST00000472119 NYAP1Q6ZVC0 841 aa15.01□□□□□ -0.01
SCN9A-206ENST00000472119 WBP1LQ9NX94 342 aa15.01□□□□□ -0.01
SCN9A-206ENST00000472119 FBXW7Q969H0 707 aa15□□□□□ -0.01
SCN9A-206ENST00000472119 MFSD10Q14728 455 aa14.98□□□□□ -0.01
SCN9A-206ENST00000472119 SEPT9Q9UHD8 586 aaPredicted RBP14.98□□□□□ -0.01
SCN9A-206ENST00000472119 PHF14O94880 888 aa14.97□□□□□ -0.01
SCN9A-206ENST00000472119 GTPBP6O43824 516 aaPredicted RBP14.95□□□□□ -0.02
SCN9A-206ENST00000472119 ONECUT3O60422 494 aaPredicted RBP14.9□□□□□ -0.02
SCN9A-206ENST00000472119 C6orf132Q5T0Z8 1188 aa14.9□□□□□ -0.02
SCN9A-206ENST00000472119 HPS5Q9UPZ3 1129 aa14.89□□□□□ -0.03
SCN9A-206ENST00000472119 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.88□□□□□ -0.03
SCN9A-206ENST00000472119 TSR3Q9UJK0 312 aaKnown RBP14.88□□□□□ -0.03
SCN9A-206ENST00000472119 TRIM6-TRIM34B2RNG4 842 aa14.87□□□□□ -0.03
SCN9A-206ENST00000472119 FAM98CQ17RN3 349 aaKnown RBP14.87□□□□□ -0.03
SCN9A-206ENST00000472119 LRCH3Q96II8 777 aa14.87□□□□□ -0.03
SCN9A-206ENST00000472119 LAPTM4AQ15012 233 aa14.86□□□□□ -0.03
SCN9A-206ENST00000472119 EPAS1Q99814 870 aa14.86□□□□□ -0.03
SCN9A-206ENST00000472119 RBM33Q96EV2 1170 aaKnown RBP14.85□□□□□ -0.03
SCN9A-206ENST00000472119 GFRA3O60609 400 aa14.83□□□□□ -0.04
SCN9A-206ENST00000472119 TRAF7Q6Q0C0 670 aa14.79□□□□□ -0.04
SCN9A-206ENST00000472119 CADPS2Q86UW7 1296 aa14.79□□□□□ -0.04
SCN9A-206ENST00000472119 DPYSL4O14531 572 aa14.78□□□□□ -0.04
SCN9A-206ENST00000472119 LCE2BO14633 110 aa14.78□□□□□ -0.04
SCN9A-206ENST00000472119 DDX12PQ92771 950 aa14.76□□□□□ -0.05
SCN9A-206ENST00000472119 PPP4CP60510 307 aa14.75□□□□□ -0.05
SCN9A-206ENST00000472119 PACS2Q86VP3 889 aa14.73□□□□□ -0.05
SCN9A-206ENST00000472119 PRKD2Q9BZL6 878 aa14.72□□□□□ -0.05
SCN9A-206ENST00000472119 TSKSQ9UJT2 592 aa14.71□□□□□ -0.05
SCN9A-206ENST00000472119 CAMK2BQ13554 666 aa14.7□□□□□ -0.06
SCN9A-206ENST00000472119 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
SCN9A-206ENST00000472119 TJAP1Q5JTD0 557 aa14.68□□□□□ -0.06
SCN9A-206ENST00000472119 MAP3K7O43318 606 aa14.67□□□□□ -0.06
SCN9A-206ENST00000472119 NBR1Q14596 966 aa14.67□□□□□ -0.06
SCN9A-206ENST00000472119 TSR1Q2NL82 804 aaKnown RBP14.67□□□□□ -0.06
SCN9A-206ENST00000472119 NRG2O14511 850 aaPredicted RBP14.66□□□□□ -0.06
SCN9A-206ENST00000472119 SMAPO00193 183 aa14.65□□□□□ -0.06
SCN9A-206ENST00000472119 EN1Q05925 392 aaPredicted RBP14.65□□□□□ -0.06
SCN9A-206ENST00000472119 SAMD7Q7Z3H4 446 aa14.65□□□□□ -0.06
SCN9A-206ENST00000472119 PPP1R18Q6NYC8 613 aa14.63□□□□□ -0.07
SCN9A-206ENST00000472119 MTRQ99707 1265 aa14.63□□□□□ -0.07
SCN9A-206ENST00000472119 IL21Q9HBE4 155 aa14.61□□□□□ -0.07
SCN9A-206ENST00000472119 V9GY48 417 aaPredicted RBP14.59□□□□□ -0.07
SCN9A-206ENST00000472119 CDCA7LQ96GN5 454 aa14.58□□□□□ -0.08
SCN9A-206ENST00000472119 RNF40O75150 1001 aa14.56□□□□□ -0.08
SCN9A-206ENST00000472119 PRSS12P56730 875 aa14.55□□□□□ -0.08
SCN9A-206ENST00000472119 ZNF516Q92618 1163 aa14.55□□□□□ -0.08
SCN9A-206ENST00000472119 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.55□□□□□ -0.08
SCN9A-206ENST00000472119 FAM198AQ9UFP1 575 aa14.54□□□□□ -0.08
SCN9A-206ENST00000472119 ZNF787Q6DD87 383 aa14.53□□□□□ -0.08
SCN9A-206ENST00000472119 PNMA3Q9UL41 463 aa14.53□□□□□ -0.08
SCN9A-206ENST00000472119 TATDN2Q93075 761 aa14.52□□□□□ -0.09
SCN9A-206ENST00000472119 PDZRN3Q9UPQ7 1066 aa14.52□□□□□ -0.09
SCN9A-206ENST00000472119 NBPF26B4DH59 902 aa14.51□□□□□ -0.09
SCN9A-206ENST00000472119 C3orf80F5H4A9 247 aa14.51□□□□□ -0.09
SCN9A-206ENST00000472119 PDIA6Q15084 440 aa14.51□□□□□ -0.09
SCN9A-206ENST00000472119 NKX2-3Q8TAU0 364 aa14.48□□□□□ -0.09
SCN9A-206ENST00000472119 APLP1P51693 650 aa14.47□□□□□ -0.09
SCN9A-206ENST00000472119 HDGFP51858 240 aaKnown RBP14.47□□□□□ -0.09
SCN9A-206ENST00000472119 CERKQ8TCT0 537 aa14.47□□□□□ -0.09
SCN9A-206ENST00000472119 SPDYE16A6NNV3 312 aaPredicted RBP14.45□□□□□ -0.1
SCN9A-206ENST00000472119 GRXCR2A6NFK2 248 aa14.43□□□□□ -0.1
SCN9A-206ENST00000472119 GGCXP38435 758 aa14.43□□□□□ -0.1
SCN9A-206ENST00000472119 PRIM1P49642 420 aaKnown RBP14.43□□□□□ -0.1
SCN9A-206ENST00000472119 NUDT18Q6ZVK8 323 aa14.43□□□□□ -0.1
SCN9A-206ENST00000472119 COPS2P61201 443 aa14.42□□□□□ -0.1
SCN9A-206ENST00000472119 ZNF775Q96BV0 537 aaPredicted RBP14.4□□□□□ -0.1
SCN9A-206ENST00000472119 CDHR5Q9HBB8 845 aa14.38□□□□□ -0.11
SCN9A-206ENST00000472119 NECTIN2Q92692 538 aa14.35□□□□□ -0.11
SCN9A-206ENST00000472119 SWT1Q5T5J6 900 aaKnown RBP14.34□□□□□ -0.11
SCN9A-206ENST00000472119 SLF2Q8IX21 1173 aa14.32□□□□□ -0.12
SCN9A-206ENST00000472119 TMUB1Q9BVT8 246 aa14.32□□□□□ -0.12
SCN9A-206ENST00000472119 RBM27Q9P2N5 1060 aaKnown RBP14.31□□□□□ -0.12
SCN9A-206ENST00000472119 ZPR1O75312 459 aa14.29□□□□□ -0.12
SCN9A-206ENST00000472119 OSBPP22059 807 aa14.28□□□□□ -0.12
SCN9A-206ENST00000472119 E2F4Q16254 413 aa14.27□□□□□ -0.13
SCN9A-206ENST00000472119 SLC19A1P41440 591 aa14.26□□□□□ -0.13
SCN9A-206ENST00000472119 SLC4A3P48751 1232 aa14.26□□□□□ -0.13
SCN9A-206ENST00000472119 PKDCCQ504Y2 493 aa14.26□□□□□ -0.13
SCN9A-206ENST00000472119 PADI6Q6TGC4 694 aa14.26□□□□□ -0.13
SCN9A-206ENST00000472119 TRIM67Q6ZTA4 783 aa14.26□□□□□ -0.13
SCN9A-206ENST00000472119 PCDHB3Q9Y5E6 796 aa14.24□□□□□ -0.13
SCN9A-206ENST00000472119 RNF223E7ERA6 249 aa14.23□□□□□ -0.13
SCN9A-206ENST00000472119 MYT1Q01538 1121 aa14.21□□□□□ -0.13
SCN9A-206ENST00000472119 TTC13Q8NBP0 860 aa14.21□□□□□ -0.13
SCN9A-206ENST00000472119 PRR14Q9BWN1 585 aa14.2□□□□□ -0.14
SCN9A-206ENST00000472119 BLOC1S3Q6QNY0 202 aa14.19□□□□□ -0.14
SCN9A-206ENST00000472119 EMID1Q96A84 441 aaPredicted RBP14.19□□□□□ -0.14
SCN9A-206ENST00000472119 ARIH1Q9Y4X5 557 aaPredicted RBP14.19□□□□□ -0.14
SCN9A-206ENST00000472119 DGAT1O75907 488 aa14.18□□□□□ -0.14
SCN9A-206ENST00000472119 TLL1O43897 1013 aa14.17□□□□□ -0.14
SCN9A-206ENST00000472119 SPRYD7Q5W111 196 aa14.17□□□□□ -0.14
SCN9A-206ENST00000472119 BBXQ8WY36 941 aaPredicted RBP14.17□□□□□ -0.14
SCN9A-206ENST00000472119 WDR70Q9NW82 654 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms