RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 CARD11Q9BXL7 1154 aa13.22□□□□□ -0.29
NUP50-214ENST00000469163 HECW1Q76N89 1606 aa13.22□□□□□ -0.29
NUP50-214ENST00000469163 IPO9Q96P70 1041 aaKnown RBP13.21□□□□□ -0.29
NUP50-214ENST00000469163 WASHC2AQ641Q2 1341 aa13.21□□□□□ -0.3
NUP50-214ENST00000469163 RGS3P49796 1198 aa13.2□□□□□ -0.3
NUP50-214ENST00000469163 FAM43AQ8N2R8 423 aa13.19□□□□□ -0.3
NUP50-214ENST00000469163 NUTM2FA1L443 756 aa13.19□□□□□ -0.3
NUP50-214ENST00000469163 PPP1R15AO75807 674 aaPredicted RBP13.18□□□□□ -0.3
NUP50-214ENST00000469163 RAPGEF6Q8TEU7 1601 aa13.18□□□□□ -0.3
NUP50-214ENST00000469163 ANKRD50Q9ULJ7 1429 aa13.17□□□□□ -0.3
NUP50-214ENST00000469163 HSPA5P11021 654 aaKnown RBP13.17□□□□□ -0.3
NUP50-214ENST00000469163 FAM9BQ8IZU0 186 aa13.17□□□□□ -0.3
NUP50-214ENST00000469163 ABCC5O15440 1437 aa13.17□□□□□ -0.3
NUP50-214ENST00000469163 ASXL2Q76L83 1435 aa13.17□□□□□ -0.3
NUP50-214ENST00000469163 EIF4G2P78344 907 aaKnown RBP eCLIP13.17□□□□□ -0.3
NUP50-214ENST00000469163 GPATCH8Q9UKJ3 1502 aaKnown RBP13.16□□□□□ -0.3
NUP50-214ENST00000469163 EHBP1L1Q8N3D4 1523 aa13.16□□□□□ -0.3
NUP50-214ENST00000469163 DAPK1P53355 1430 aa13.16□□□□□ -0.3
NUP50-214ENST00000469163 NAIPQ13075 1403 aa13.16□□□□□ -0.3
NUP50-214ENST00000469163 GSE1Q14687 1217 aa13.16□□□□□ -0.3
NUP50-214ENST00000469163 C9orf84Q5VXU9 1444 aa13.15□□□□□ -0.3
NUP50-214ENST00000469163 ANP32CO43423 234 aa13.15□□□□□ -0.3
NUP50-214ENST00000469163 TNNT2P45379 298 aaPredicted RBP13.15□□□□□ -0.3
NUP50-214ENST00000469163 CEBPAP49715 358 aaPredicted RBP13.15□□□□□ -0.3
NUP50-214ENST00000469163 TMC1Q8TDI8 760 aa13.15□□□□□ -0.3
NUP50-214ENST00000469163 KIF14Q15058 1648 aa13.14□□□□□ -0.31
NUP50-214ENST00000469163 CD109Q6YHK3 1445 aa13.14□□□□□ -0.31
NUP50-214ENST00000469163 CAMSAP2Q08AD1 1489 aa13.14□□□□□ -0.31
NUP50-214ENST00000469163 USP35Q9P2H5 1018 aa13.14□□□□□ -0.31
NUP50-214ENST00000469163 SUPT6HQ7KZ85 1726 aaKnown RBP13.14□□□□□ -0.31
NUP50-214ENST00000469163 CHMP4AQ9BY43 222 aa13.13□□□□□ -0.31
NUP50-214ENST00000469163 CFAP43Q8NDM7 1665 aa13.13□□□□□ -0.31
NUP50-214ENST00000469163 NPM2Q86SE8 214 aaKnown RBP13.13□□□□□ -0.31
NUP50-214ENST00000469163 HAP1P54257 671 aaPredicted RBP13.12□□□□□ -0.31
NUP50-214ENST00000469163 NBPF8Q3BBV2 869 aa13.12□□□□□ -0.31
NUP50-214ENST00000469163 FBXO31Q5XUX0 539 aaPredicted RBP13.12□□□□□ -0.31
NUP50-214ENST00000469163 PTPN23Q9H3S7 1636 aa13.11□□□□□ -0.31
NUP50-214ENST00000469163 TMEM132EQ6IEE7 984 aa13.11□□□□□ -0.31
NUP50-214ENST00000469163 CANXP27824 592 aaKnown RBP13.11□□□□□ -0.31
NUP50-214ENST00000469163 NBPF1Q3BBV0 1214 aa13.11□□□□□ -0.31
NUP50-214ENST00000469163 TRAPPC8Q9Y2L5 1435 aa13.1□□□□□ -0.31
NUP50-214ENST00000469163 TRAK1Q9UPV9 953 aa13.09□□□□□ -0.31
NUP50-214ENST00000469163 B4GALNT3Q6L9W6 998 aa13.09□□□□□ -0.31
NUP50-214ENST00000469163 SOX12O15370 315 aa13.09□□□□□ -0.31
NUP50-214ENST00000469163 ABCA8O94911 1581 aa13.09□□□□□ -0.31
NUP50-214ENST00000469163 ST20-MTHFSA0A0A6YYL1 179 aa13.08□□□□□ -0.32
NUP50-214ENST00000469163 CC2D1BQ5T0F9 858 aaKnown RBP13.07□□□□□ -0.32
NUP50-214ENST00000469163 FRAT1Q92837 279 aaPredicted RBP13.07□□□□□ -0.32
NUP50-214ENST00000469163 RBM33Q96EV2 1170 aaKnown RBP13.07□□□□□ -0.32
NUP50-214ENST00000469163 PLEKHH2Q8IVE3 1493 aa13.07□□□□□ -0.32
NUP50-214ENST00000469163 BRD2P25440 801 aaKnown RBP13.07□□□□□ -0.32
NUP50-214ENST00000469163 FANCAO15360 1455 aa13.06□□□□□ -0.32
NUP50-214ENST00000469163 HFM1A2PYH4 1435 aa13.06□□□□□ -0.32
NUP50-214ENST00000469163 NCOA1Q15788 1441 aa13.06□□□□□ -0.32
NUP50-214ENST00000469163 MAP3K1Q13233 1512 aa13.05□□□□□ -0.32
NUP50-214ENST00000469163 RSPH4AQ5TD94 716 aa13.05□□□□□ -0.32
NUP50-214ENST00000469163 KANK1Q14678 1352 aa13.05□□□□□ -0.32
NUP50-214ENST00000469163 PNNQ9H307 717 aaKnown RBP13.05□□□□□ -0.32
NUP50-214ENST00000469163 SYCP2Q9BX26 1530 aa13.05□□□□□ -0.32
NUP50-214ENST00000469163 ADGRL1O94910 1474 aa13.05□□□□□ -0.32
NUP50-214ENST00000469163 PPM1GO15355 546 aaPredicted RBP13.04□□□□□ -0.32
NUP50-214ENST00000469163 PPP4R2Q9NY27 417 aa13.04□□□□□ -0.32
NUP50-214ENST00000469163 GTF2E1P29083 439 aaPredicted RBP13.04□□□□□ -0.32
NUP50-214ENST00000469163 PLCD3Q8N3E9 789 aa13.04□□□□□ -0.32
NUP50-214ENST00000469163 MIA2Q96PC5 1412 aa13.04□□□□□ -0.32
NUP50-214ENST00000469163 ZBTB7CA1YPR0 619 aa13.02□□□□□ -0.32
NUP50-214ENST00000469163 CFAP70Q5T0N1 1121 aa13.02□□□□□ -0.32
NUP50-214ENST00000469163 C14orf37Q86TY3 774 aa13.02□□□□□ -0.32
NUP50-214ENST00000469163 PRDM4Q9UKN5 801 aa13.02□□□□□ -0.32
NUP50-214ENST00000469163 CCDC144AA2RUR9 1427 aa13.02□□□□□ -0.33
NUP50-214ENST00000469163 ROCK2O75116 1388 aaKnown RBP13.01□□□□□ -0.33
NUP50-214ENST00000469163 HNRNPUQ00839 825 aaKnown RBP eCLIP13.01□□□□□ -0.33
NUP50-214ENST00000469163 ABCC2Q92887 1545 aa13□□□□□ -0.33
NUP50-214ENST00000469163 TULP1O00294 542 aaPredicted RBP13□□□□□ -0.33
NUP50-214ENST00000469163 IPO4Q8TEX9 1081 aaKnown RBP13□□□□□ -0.33
NUP50-214ENST00000469163 MRS2Q9HD23 443 aa13□□□□□ -0.33
NUP50-214ENST00000469163 ADCY10Q96PN6 1610 aa13□□□□□ -0.33
NUP50-214ENST00000469163 CALD1Q05682 793 aaKnown RBP13□□□□□ -0.33
NUP50-214ENST00000469163 RRAGDQ9NQL2 400 aaPredicted RBP13□□□□□ -0.33
NUP50-214ENST00000469163 WDR7Q9Y4E6 1490 aa12.99□□□□□ -0.33
NUP50-214ENST00000469163 POGKQ9P215 609 aa12.99□□□□□ -0.33
NUP50-214ENST00000469163 CFAP65Q6ZU64 1925 aaKnown RBP12.99□□□□□ -0.33
NUP50-214ENST00000469163 AMER1Q5JTC6 1135 aaPredicted RBP12.99□□□□□ -0.33
NUP50-214ENST00000469163 AKNAQ7Z591 1439 aa12.98□□□□□ -0.33
NUP50-214ENST00000469163 STAC3Q96MF2 364 aa12.98□□□□□ -0.33
NUP50-214ENST00000469163 ZFP91Q96JP5 570 aaPredicted RBP12.97□□□□□ -0.33
NUP50-214ENST00000469163 KDM6BO15054 1643 aa12.97□□□□□ -0.33
NUP50-214ENST00000469163 CCDC141Q6ZP82 1450 aa12.97□□□□□ -0.33
NUP50-214ENST00000469163 PLCH2O75038 1416 aa12.96□□□□□ -0.33
NUP50-214ENST00000469163 LMOD2Q6P5Q4 547 aa12.96□□□□□ -0.33
NUP50-214ENST00000469163 SRPK2P78362 688 aaKnown RBP12.95□□□□□ -0.34
NUP50-214ENST00000469163 SLC26A8Q96RN1 970 aa12.95□□□□□ -0.34
NUP50-214ENST00000469163 RIMBP3CA6NJZ7 1639 aa12.95□□□□□ -0.34
NUP50-214ENST00000469163 RIMBP3BA6NNM3 1639 aa12.95□□□□□ -0.34
NUP50-214ENST00000469163 RIMBP3Q9UFD9 1639 aa12.95□□□□□ -0.34
NUP50-214ENST00000469163 TSPOAP1O95153 1857 aa12.95□□□□□ -0.34
NUP50-214ENST00000469163 ZHX1Q9UKY1 873 aaPredicted RBP12.95□□□□□ -0.34
NUP50-214ENST00000469163 ZCCHC11Q5TAX3 1644 aaKnown RBP12.94□□□□□ -0.34
NUP50-214ENST00000469163 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.94□□□□□ -0.34
NUP50-214ENST00000469163 MINK1Q8N4C8 1332 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms