RNA–Protein interactions for RNA: ENST00000465860.5

EXOSC3-204, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-204ENST00000465860 SLC4A5Q9BY07 1137 aa9.6□□□□□ -0.87
EXOSC3-204ENST00000465860 ZBED2Q9BTP6 218 aa9.59□□□□□ -0.87
EXOSC3-204ENST00000465860 E2F4Q16254 413 aa9.58□□□□□ -0.88
EXOSC3-204ENST00000465860 TYW1BQ6NUM6 668 aa9.58□□□□□ -0.88
EXOSC3-204ENST00000465860 FBXW7Q969H0 707 aa9.56□□□□□ -0.88
EXOSC3-204ENST00000465860 WDR70Q9NW82 654 aa9.56□□□□□ -0.88
EXOSC3-204ENST00000465860 BHMG1C9JSJ3 638 aaPredicted RBP9.55□□□□□ -0.88
EXOSC3-204ENST00000465860 PDIA6Q15084 440 aa9.55□□□□□ -0.88
EXOSC3-204ENST00000465860 DDX12PQ92771 950 aa9.55□□□□□ -0.88
EXOSC3-204ENST00000465860 STAC3Q96MF2 364 aa9.55□□□□□ -0.88
EXOSC3-204ENST00000465860 EPAS1Q99814 870 aa9.55□□□□□ -0.88
EXOSC3-204ENST00000465860 PPP1R3GB7ZBB8 358 aa9.54□□□□□ -0.88
EXOSC3-204ENST00000465860 COL9A1P20849 921 aa9.54□□□□□ -0.88
EXOSC3-204ENST00000465860 KCTD12Q96CX2 325 aaKnown RBP9.54□□□□□ -0.88
EXOSC3-204ENST00000465860 TSHZ2Q9NRE2 1034 aa9.54□□□□□ -0.88
EXOSC3-204ENST00000465860 C6orf132Q5T0Z8 1188 aa9.52□□□□□ -0.89
EXOSC3-204ENST00000465860 HCSTQ9UBK5 93 aa9.52□□□□□ -0.89
EXOSC3-204ENST00000465860 ARIH1Q9Y4X5 557 aaPredicted RBP9.52□□□□□ -0.89
EXOSC3-204ENST00000465860 SPDYE16A6NNV3 312 aaPredicted RBP9.51□□□□□ -0.89
EXOSC3-204ENST00000465860 PROX2Q3B8N5 592 aa9.51□□□□□ -0.89
EXOSC3-204ENST00000465860 RBM33Q96EV2 1170 aaKnown RBP9.51□□□□□ -0.89
EXOSC3-204ENST00000465860 NBR1Q14596 966 aa9.49□□□□□ -0.89
EXOSC3-204ENST00000465860 MRPL50Q8N5N7 158 aaKnown RBP9.48□□□□□ -0.89
EXOSC3-204ENST00000465860 EN1Q05925 392 aaPredicted RBP9.47□□□□□ -0.89
EXOSC3-204ENST00000465860 RABGEF1Q9UJ41 708 aa9.47□□□□□ -0.89
EXOSC3-204ENST00000465860 NBPF3Q9H094 633 aa9.46□□□□□ -0.9
EXOSC3-204ENST00000465860 PRIM1P49642 420 aaKnown RBP9.45□□□□□ -0.9
EXOSC3-204ENST00000465860 TSR1Q2NL82 804 aaKnown RBP9.45□□□□□ -0.9
EXOSC3-204ENST00000465860 GRXCR2A6NFK2 248 aa9.44□□□□□ -0.9
EXOSC3-204ENST00000465860 GOLGA8CPA6NN73 597 aa9.44□□□□□ -0.9
EXOSC3-204ENST00000465860 MAP3K7O43318 606 aa9.44□□□□□ -0.9
EXOSC3-204ENST00000465860 PTPN5P54829 565 aa9.44□□□□□ -0.9
EXOSC3-204ENST00000465860 THSD4Q6ZMP0 1018 aa9.43□□□□□ -0.9
EXOSC3-204ENST00000465860 WNT2BQ93097 391 aa9.43□□□□□ -0.9
EXOSC3-204ENST00000465860 KIAA1468Q9P260 1216 aa9.43□□□□□ -0.9
EXOSC3-204ENST00000465860 ONECUT3O60422 494 aaPredicted RBP9.42□□□□□ -0.9
EXOSC3-204ENST00000465860 SHROOM4Q9ULL8 1493 aa9.41□□□□□ -0.9
EXOSC3-204ENST00000465860 TRIM6-TRIM34B2RNG4 842 aa9.41□□□□□ -0.9
EXOSC3-204ENST00000465860 PLA2G2EQ9NZK7 142 aa9.41□□□□□ -0.9
EXOSC3-204ENST00000465860 KCNV2Q8TDN2 545 aa9.4□□□□□ -0.9
EXOSC3-204ENST00000465860 OSBPP22059 807 aa9.39□□□□□ -0.91
EXOSC3-204ENST00000465860 LAPTM4BQ86VI4 370 aa9.38□□□□□ -0.91
EXOSC3-204ENST00000465860 SEPT9Q9UHD8 586 aaPredicted RBP9.38□□□□□ -0.91
EXOSC3-204ENST00000465860 TSKSQ9UJT2 592 aa9.38□□□□□ -0.91
EXOSC3-204ENST00000465860 ARHGEF1Q92888 912 aaKnown RBP9.37□□□□□ -0.91
EXOSC3-204ENST00000465860 EIF4G1Q04637 1599 aaKnown RBP9.37□□□□□ -0.91
EXOSC3-204ENST00000465860 CC2D2AQ9P2K1 1620 aa9.36□□□□□ -0.91
EXOSC3-204ENST00000465860 PLCB2Q00722 1185 aa9.36□□□□□ -0.91
EXOSC3-204ENST00000465860 ANKK1Q8NFD2 765 aa9.36□□□□□ -0.91
EXOSC3-204ENST00000465860 ZFRQ96KR1 1074 aaKnown RBP9.36□□□□□ -0.91
EXOSC3-204ENST00000465860 CDHR5Q9HBB8 845 aa9.36□□□□□ -0.91
EXOSC3-204ENST00000465860 BCAMP50895 628 aa9.34□□□□□ -0.91
EXOSC3-204ENST00000465860 PRSS12P56730 875 aa9.34□□□□□ -0.91
EXOSC3-204ENST00000465860 CDCA7LQ96GN5 454 aa9.34□□□□□ -0.91
EXOSC3-204ENST00000465860 FAM198AQ9UFP1 575 aa9.34□□□□□ -0.91
EXOSC3-204ENST00000465860 MLLT3P42568 568 aaPredicted RBP9.33□□□□□ -0.92
EXOSC3-204ENST00000465860 FAM98CQ17RN3 349 aaKnown RBP9.33□□□□□ -0.92
EXOSC3-204ENST00000465860 PACS2Q86VP3 889 aa9.33□□□□□ -0.92
EXOSC3-204ENST00000465860 CERKQ8TCT0 537 aa9.33□□□□□ -0.92
EXOSC3-204ENST00000465860 SOWAHBA6NEL2 793 aa9.32□□□□□ -0.92
EXOSC3-204ENST00000465860 C3orf80F5H4A9 247 aa9.31□□□□□ -0.92
EXOSC3-204ENST00000465860 SMAPO00193 183 aa9.3□□□□□ -0.92
EXOSC3-204ENST00000465860 NPDC1Q9NQX5 325 aaPredicted RBP9.29□□□□□ -0.92
EXOSC3-204ENST00000465860 P3H3Q8IVL6 736 aa9.27□□□□□ -0.93
EXOSC3-204ENST00000465860 TATDN2Q93075 761 aa9.27□□□□□ -0.93
EXOSC3-204ENST00000465860 WBP1LQ9NX94 342 aa9.27□□□□□ -0.93
EXOSC3-204ENST00000465860 CECR2Q9BXF3 1484 aa9.27□□□□□ -0.93
EXOSC3-204ENST00000465860 LRCH3Q96II8 777 aa9.26□□□□□ -0.93
EXOSC3-204ENST00000465860 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.26□□□□□ -0.93
EXOSC3-204ENST00000465860 RBM27Q9P2N5 1060 aaKnown RBP9.26□□□□□ -0.93
EXOSC3-204ENST00000465860 PNMA3Q9UL41 463 aa9.26□□□□□ -0.93
EXOSC3-204ENST00000465860 NBPF26B4DH59 902 aa9.25□□□□□ -0.93
EXOSC3-204ENST00000465860 TTC13Q8NBP0 860 aa9.25□□□□□ -0.93
EXOSC3-204ENST00000465860 IFFO2Q5TF58 517 aa9.24□□□□□ -0.93
EXOSC3-204ENST00000465860 PADI6Q6TGC4 694 aa9.24□□□□□ -0.93
EXOSC3-204ENST00000465860 NUDT18Q6ZVK8 323 aa9.24□□□□□ -0.93
EXOSC3-204ENST00000465860 HPS5Q9UPZ3 1129 aa9.24□□□□□ -0.93
EXOSC3-204ENST00000465860 SEMA3EO15041 775 aa9.23□□□□□ -0.93
EXOSC3-204ENST00000465860 SAMD7Q7Z3H4 446 aa9.23□□□□□ -0.93
EXOSC3-204ENST00000465860 TSR3Q9UJK0 312 aaKnown RBP9.23□□□□□ -0.93
EXOSC3-204ENST00000465860 HAP1P54257 671 aaPredicted RBP9.22□□□□□ -0.93
EXOSC3-204ENST00000465860 NYAP1Q6ZVC0 841 aa9.22□□□□□ -0.93
EXOSC3-204ENST00000465860 ITGBL1O95965 494 aaPredicted RBP9.2□□□□□ -0.94
EXOSC3-204ENST00000465860 PTGDRQ13258 359 aa9.19□□□□□ -0.94
EXOSC3-204ENST00000465860 SMARCA4P51532 1647 aa9.18□□□□□ -0.94
EXOSC3-204ENST00000465860 PPP4CP60510 307 aa9.18□□□□□ -0.94
EXOSC3-204ENST00000465860 A0A0G2JS52 829 aa9.17□□□□□ -0.94
EXOSC3-204ENST00000465860 NUTM2FA1L443 756 aa9.17□□□□□ -0.94
EXOSC3-204ENST00000465860 KDM2AQ9Y2K7 1162 aa9.17□□□□□ -0.94
EXOSC3-204ENST00000465860 EYA1Q99502 592 aa9.15□□□□□ -0.94
EXOSC3-204ENST00000465860 TESPA1A2RU30 521 aaPredicted RBP9.14□□□□□ -0.95
EXOSC3-204ENST00000465860 SWT1Q5T5J6 900 aaKnown RBP9.14□□□□□ -0.95
EXOSC3-204ENST00000465860 MROH2BQ7Z745 1585 aa9.13□□□□□ -0.95
EXOSC3-204ENST00000465860 RNF40O75150 1001 aa9.13□□□□□ -0.95
EXOSC3-204ENST00000465860 HDGFP51858 240 aaKnown RBP9.13□□□□□ -0.95
EXOSC3-204ENST00000465860 KCNC4Q03721 635 aa9.13□□□□□ -0.95
EXOSC3-204ENST00000465860 ATAD2BQ9ULI0 1458 aa9.12□□□□□ -0.95
EXOSC3-204ENST00000465860 BAZ1AQ9NRL2 1556 aaPredicted RBP9.12□□□□□ -0.95
EXOSC3-204ENST00000465860 RBM26Q5T8P6 1007 aaKnown RBP9.11□□□□□ -0.95
EXOSC3-204ENST00000465860 FCHSD2O94868 740 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms